mRNA_Ecto-sp13_S_contig58207.16284.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58207.16284.1
Unique NamemRNA_Ecto-sp13_S_contig58207.16284.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A6H5K0Z4_9PHAE (Phosducin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z4_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.430e-42
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 QVLATKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQEHDVFEAS 222
            +VLA KQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQ+DVEWLLQEHDVFEAS
Sbjct:  217 EVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQDDVEWLLQEHDVFEAS 290
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A835YKQ5_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.220e-24
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 QVLATKQPTVKFLRLRSSAAEGGD---YDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQEHDVFEA 219
            +VLA + P+VKFLR+ S    GGD   YDPVALPTL++YRA E+V C TRVTDD+G+ FT+ DVEWLLQE ++FEA
Sbjct:  214 EVLAREYPSVKFLRMLSGDVSGGDEEGYDPVALPTLMVYRAKEIVACFTRVTDDLGDTFTKSDVEWLLQEINIFEA 289
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A7R9UGG9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGG9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.920e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 QVLATKQPTVKFLRLRSSAAE---GGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQEHDVFEAS 222
            ++LA +QP+VKFLR+R+       G ++D +ALPTLL+YR G+ V  + RV D++GE     DVEWLL    VF+AS
Sbjct:  199 EILARRQPSVKFLRMRADECRRTTGQEFDAIALPTLLVYRGGQTVATIVRVQDEVGEGLQANDVEWLLGLEGVFQAS 275
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A7S2B798_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B798_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.060e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    7 LATKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQEHDVFEA 219
            LA     VKF+RL+S+ +    +DPV LPT+ +Y+AG++     RV D +G NF+ +D+EW+L +  VFE+
Sbjct:  243 LARSYTNVKFVRLKSTESPS-PFDPVTLPTICVYKAGDLCNSFVRVQDTVGTNFSSDDIEWMLNQEGVFES 312
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A7S2RCN5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCN5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.770e-11
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    7 LATKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQEHDVF 213
            LA     VKFLRL+++AA    +D   +P L +YR+G++  C  RVTD +GE FT +DVE LL EH VF
Sbjct:  245 LARSHSHVKFLRLQAAAAPT-TFDADVMPVLSIYRSGDMHACCVRVTDQVGERFTTDDVENLLSEHGVF 312
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: PHLP_RAT (Phosducin-like protein n=73 Tax=Eutheria TaxID=9347 RepID=PHLP_RAT)

HSP 1 Score: 62.0 bits (149), Expect = 1.390e-9
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    7 LATKQPTVKFLRLRSSAAEGGD-YDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQE 201
            LA + PTVKF R+RSS       +   ALP LL+Y+AGE++G   RVTD +GE+F   D+E  LQE
Sbjct:  205 LAAEYPTVKFCRVRSSVIGASSRFTRNALPALLIYKAGELIGNFVRVTDQLGEDFFAVDLEAFLQE 270
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: PHLP_MOUSE (Phosducin-like protein n=25 Tax=Eutheria TaxID=9347 RepID=PHLP_MOUSE)

HSP 1 Score: 62.0 bits (149), Expect = 1.390e-9
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    7 LATKQPTVKFLRLRSSAAEGGD-YDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQE 201
            LAT+ P VKF R+RSS       +   ALP LL+Y+AGE++G   RVTD +GE+F   D+E  LQE
Sbjct:  205 LATEYPAVKFCRVRSSVIGASSRFTRNALPALLIYKAGELIGNFVRVTDQLGEDFFAVDLEAFLQE 270
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A7J6BWM3_9TELE (Phosducin domain-containing protein n=21 Tax=Cyprinoidei TaxID=30727 RepID=A0A7J6BWM3_9TELE)

HSP 1 Score: 61.6 bits (148), Expect = 2.070e-9
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    7 LATKQPTVKFLRLRSSAA-EGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQEH 204
            LA + P VKF R+R SA      +   ALP LLLYR GE+VG + RV+D +G++F   DVE LLQE+
Sbjct:  222 LALQYPMVKFCRVRGSAVGTSALFRSSALPALLLYRGGELVGNLVRVSDQLGDDFYATDVEALLQEY 288
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A670IP23_PODMU (Phosducin domain-containing protein n=2 Tax=Lacertinae TaxID=162266 RepID=A0A670IP23_PODMU)

HSP 1 Score: 61.2 bits (147), Expect = 2.160e-9
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    7 LATKQPTVKFLRLRSSAAEGGD-YDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQE 201
            LAT+ P VKF R+RSS       +   ALP LL+Y+ GE+VG   RVTD +GE+F   D+E  LQE
Sbjct:  167 LATEYPVVKFCRVRSSLIGASSRFTTSALPALLVYKGGELVGNFVRVTDQLGEDFFAGDLEGFLQE 232
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BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Match: A0A498NGQ3_LABRO (Phosducin n=3 Tax=Cyprinoidei TaxID=30727 RepID=A0A498NGQ3_LABRO)

HSP 1 Score: 61.6 bits (148), Expect = 2.160e-9
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    7 LATKQPTVKFLRLRSSAA-EGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQEDVEWLLQEH 204
            LA + P VKF R+R SA      +   ALP LLLYR GE+VG + RV+D +G++F   DVE LLQE+
Sbjct:  237 LALQYPMVKFCRVRGSAVGTSALFRSSALPALLLYRGGELVGNLVRVSDQLGDDFYATDVEALLQEY 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58207.16284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0Z4_9PHAE6.430e-4295.95Phosducin domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YKQ5_9STRA4.220e-2463.16Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7R9UGG9_9STRA2.920e-1548.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2B798_9STRA1.060e-1142.25Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RCN5_9STRA6.770e-1149.28Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
PHLP_RAT1.390e-950.00Phosducin-like protein n=73 Tax=Eutheria TaxID=934... [more]
PHLP_MOUSE1.390e-950.00Phosducin-like protein n=25 Tax=Eutheria TaxID=934... [more]
A0A7J6BWM3_9TELE2.070e-950.75Phosducin domain-containing protein n=21 Tax=Cypri... [more]
A0A670IP23_PODMU2.160e-950.00Phosducin domain-containing protein n=2 Tax=Lacert... [more]
A0A498NGQ3_LABRO2.160e-950.75Phosducin n=3 Tax=Cyprinoidei TaxID=30727 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58207contigEcto-sp13_S_contig58207:635..859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score149.4
Seed ortholog evalue6.5e-34
Seed eggNOG ortholog2880.D8LEJ7
Preferred namePDCL
Model size225
KEGG koko:K08327,ko:K15690
Hectar predicted targeting categoryother localisation
GOsGO:0001750,GO:0003008,GO:0003674,GO:0004857,GO:0004859,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006139,GO:0006457,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007186,GO:0007600,GO:0007601,GO:0007602,GO:0008150,GO:0008152,GO:0008277,GO:0008589,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0018130,GO:0019438,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030234,GO:0032501,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0042995,GO:0043005,GO:0043086,GO:0043226,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0045880,GO:0046116,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051606,GO:0051716,GO:0055086,GO:0055102,GO:0061083,GO:0061084,GO:0065003,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098772,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902605,GO:1903332,GO:1903333
Exons1
EggNOG free text desc.heterotrimeric G-protein complex assembly
EggNOG OGsKOG3171@1,KOG3171@2759
Cds size225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463808.7619731-CDS-Ecto-sp13_S_contig58207:634..8591681463808.7619731-CDS-Ecto-sp13_S_contig58207:634..859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58207 635..859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58207.16284.1prot_Ecto-sp13_S_contig58207.16284.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58207 635..859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58207.16284.1

>prot_Ecto-sp13_S_contig58207.16284.1 ID=prot_Ecto-sp13_S_contig58207.16284.1|Name=mRNA_Ecto-sp13_S_contig58207.16284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
QVLATKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCMTRVTD
DIGENFTQEDVEWLLQEHDVFEAS*
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mRNA from alignment at Ecto-sp13_S_contig58207:635..859-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58207.16284.1 ID=mRNA_Ecto-sp13_S_contig58207.16284.1|Name=mRNA_Ecto-sp13_S_contig58207.16284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58207:635..859- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTTTGGCGACCAAGCAGCCCACGGTCAAGTTCCTGCGTCTGAGGAG
CTCGGCGGCAGAGGGGGGCGACTACGACCCAGTGGCCCTGCCCACGTTGC
TGCTCTACAGGGCGGGGGAAGTAGTTGGGTGCATGACACGTGTCACTGAC
GACATCGGGGAGAACTTCACGCAGGAGGACGTGGAGTGGCTACTGCAGGA
ACACGACGTTTTCGAGGCAAGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58207:635..859-

>mRNA_Ecto-sp13_S_contig58207.16284.1 ID=mRNA_Ecto-sp13_S_contig58207.16284.1|Name=mRNA_Ecto-sp13_S_contig58207.16284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58207:635..859- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTTTGGCGACCAAGCAGCCCACGGTCAAGTTCCTGCGTCTGAGGAG
CTCGGCGGCAGAGGGGGGCGACTACGACCCAGTGGCCCTGCCCACGTTGC
TGCTCTACAGGGCGGGGGAAGTAGTTGGGTGCATGACACGTGTCACTGAC
GACATCGGGGAGAACTTCACGCAGGAGGACGTGGAGTGGCTACTGCAGGA
ACACGACGTTTTCGAGGCAAGCTAA
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