mRNA_Ecto-sp13_S_contig58120.16273.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58120.16273.1
Unique NamemRNA_Ecto-sp13_S_contig58120.16273.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58120.16273.1 vs. uniprot
Match: D7FLU2_ECTSI (OTU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.350e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 RELRSSPSEYLPFLDGLEEGEEFDKYCVKVEGSAEWGGQVELQ 129
            RELRSSPSEYLPFLDGLEEGEEFDKYCVKVEGSAEWGGQVELQ
Sbjct:  228 RELRSSPSEYLPFLDGLEEGEEFDKYCVKVEGSAEWGGQVELQ 270
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BLAST of mRNA_Ecto-sp13_S_contig58120.16273.1 vs. uniprot
Match: A0A7S1PJJ9_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1PJJ9_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 2.430e-6
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    7 LRSSPSEYLPFLDGLEEGEEFDKYCVKVEGSAEWGGQVELQVSA 138
            LR    +YLPFL GLE   E++ Y  KVE SAEWGGQ+ELQ  A
Sbjct:  253 LRKHQEDYLPFL-GLENDSEYEGYVDKVENSAEWGGQIELQALA 295
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BLAST of mRNA_Ecto-sp13_S_contig58120.16273.1 vs. uniprot
Match: A0A835Z5X2_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.150e-5
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 LRSSPSEYLPFLDGLEEGEEFDKYCVKVEGSAEWGGQVELQ 129
            LR   +E++PF++  +EG  ++ YC  VEGSAEWGG+VEL+
Sbjct:  225 LREHAAEFMPFVEACDEGA-YEAYCALVEGSAEWGGEVELR 264
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BLAST of mRNA_Ecto-sp13_S_contig58120.16273.1 vs. uniprot
Match: I0YST0_COCSC (Cysteine proteinase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YST0_COCSC)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    7 LRSSPSEYLPFL---DGLEEGEEFDKYCVKVEGSAEWGGQVEL 126
            +R+ P ++LPF+   DG + G  F+ YCV VE SA WGGQ+EL
Sbjct:  162 MRTHPDQFLPFIPQEDGEDVGAAFEAYCVAVENSAAWGGQLEL 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58120.16273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLU2_ECTSI5.350e-21100.00OTU domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1PJJ9_9EUKA2.430e-659.09Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A835Z5X2_9STRA1.150e-551.22OTU domain-containing protein n=1 Tax=Tribonema mi... [more]
I0YST0_COCSC1.830e-551.16Cysteine proteinase n=1 Tax=Coccomyxa subellipsoid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58120contigEcto-sp13_S_contig58120:110..247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score91.7
Seed ortholog evalue9.9e-17
Seed eggNOG ortholog2880.D7FLU2
Preferred nameOTUD6B
Model size138
KEGG koko:K14015,ko:K18342
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008283,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016579,GO:0016787,GO:0017148,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022607,GO:0030163,GO:0030433,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032270,GO:0033554,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034976,GO:0035523,GO:0035871,GO:0036211,GO:0036459,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043248,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045727,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051603,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1990167,GO:1990168,GO:2000112,GO:2000113
Exons1
EggNOG free text desc.protein K27-linked deubiquitination
EggNOG OGsCOG5539@1,KOG2606@2759
EC3.4.19.12
Cds size138
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463807.3384197-CDS-Ecto-sp13_S_contig58120:109..2471681463807.3384197-CDS-Ecto-sp13_S_contig58120:109..247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58120 110..247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58120.16273.1prot_Ecto-sp13_S_contig58120.16273.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58120 110..247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58120.16273.1

>prot_Ecto-sp13_S_contig58120.16273.1 ID=prot_Ecto-sp13_S_contig58120.16273.1|Name=mRNA_Ecto-sp13_S_contig58120.16273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
RELRSSPSEYLPFLDGLEEGEEFDKYCVKVEGSAEWGGQVELQVSA
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mRNA from alignment at Ecto-sp13_S_contig58120:110..247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58120.16273.1 ID=mRNA_Ecto-sp13_S_contig58120.16273.1|Name=mRNA_Ecto-sp13_S_contig58120.16273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58120:110..247+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAACTGCGGTCCTCTCCTAGCGAGTACCTTCCATTCCTGGACGGTCT
GGAGGAGGGGGAGGAGTTCGACAAGTACTGCGTGAAGGTGGAGGGAAGTG
CCGAGTGGGGCGGCCAGGTGGAGCTCCAGGTATCTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58120:110..247+

>mRNA_Ecto-sp13_S_contig58120.16273.1 ID=mRNA_Ecto-sp13_S_contig58120.16273.1|Name=mRNA_Ecto-sp13_S_contig58120.16273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58120:110..247+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAACTGCGGTCCTCTCCTAGCGAGTACCTTCCATTCCTGGACGGTCT
GGAGGAGGGGGAGGAGTTCGACAAGTACTGCGTGAAGGTGGAGGGAAGTG
CCGAGTGGGGCGGCCAGGTGGAGCTCCAGGTATCTGCT
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