mRNA_Ecto-sp13_S_contig5811.16270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5811.16270.1
Unique NamemRNA_Ecto-sp13_S_contig5811.16270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5811.16270.1 vs. uniprot
Match: D7G483_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G483_ECTSI)

HSP 1 Score: 1283 bits (3320), Expect = 0.000e+0
Identity = 759/907 (83.68%), Postives = 777/907 (85.67%), Query Frame = 1 
Query:    1 VSKGLDVNGVDPQNGWTPVHYACHNGRDELARLLTSRSGTMVNVGDAGGVTPMHLAAAGGWEKCATNLLENNASPIVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAKTASKRSRTIDAFAAVAMASGVTHAVEPVVDAVDKDENRSGEGQGSEKPXXXXXXXARYGLVGIEGITIPEVATGDVAEPAVAGEGGSGHSTLDDMGSARGDRGLGAANGGGSELQDGKPHPATTVGEIAGSSGSDAGVHGGGRGGDAVPVQSNASSRASASLEALSRRASKAGVAMDLNAIMLEDLVPCHWDDDDIRCAMALAERGEAWCLASLFALGLDPDCQHPDSGDTIGIAAARGGDRETLEVCLETGVTFATKNRRGRSALHAAVVRDDLEVAALLLANPGLSGIEVDDLCDPDEDGRTPLHEMAAKGEAPTVLLLATEADSEWTNGSSGGAGTGSSNASLNTRLDDASSAPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQAGSVGGDNGPRKGSGSSIPASGGDTGVANGNASDGAKRMSDIAAVASAAAAPDTPAPSSVRSPLPLSAFAAPSLADTEELRDLRHHHHDVTNAAGKAERSEGGAMDTGRAGSTSTSTNVNSRSSLARKASSSGATRDTARSGGNHSDYGGDDHDGSSGREVRSEGEEGGDPSGWGGLLEVDVRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHSWGSTLASTSLSTLSTTSXXMIVGTTTATTTISGDSRRNGEAQDAMALCDDEGRGPTTQARKERLDISRKATVALAPFLPHTNQVATALLRRGADPSKKNRLGQTAAMCAVLAGRAGALREIRKAVLLGHSSSKDKEQEELPDLGHIAIREGHVACLRVLTESCSEQ 2721
            VSKGLDVNGVDPQNGWTPV                                            CATNLLENNASP+VKNNKGQVPAVVAMLHGHASTGKKLLQAFSAA+TASKRSRTIDAFAAVAMASGVTHAVEPVVDA DKDENRSG  QGSEKP   XXXX   GLVG+EGIT PEVA+ DVAEPAV GEGGS H+T DD GSARGDRGLGAA+GG SELQ G+PH ATTVGE AGS+GSDA V GGGRGGDAV VQSNASSRASASLEALSRRASKAGVAMDLN IMLEDLVP HWDDDDIRCA+ALAERGEAWCLASLFALGLDPDCQHPDSGDTIGIAAARGGDRETLEVCLETGV+FATKNRRGRSALHAAVVRDDLEVAALLLANPGLSGIEVDDLCDPDEDGRTPLHEMAA+GEAPTVLLLATEADSEWT G SGGA TGS NASL+TR +DASSAPG XXXXXXXXXXXXXXXXXXXXXXXXXXX  QAG VGG+NG R GSGSSIP SGGDTGVA+GN  DGAKRMSDIAAVASAAAAPDTPA SSVRSPLPLSAF APSLADTEELRDLRHHHHDVTNAAGKAER EG AMDTGRAGSTSTSTNVNSRSSLARKASSSG TRDTARSGGNHSD GGD      GREVRSEGEEG DPSGWGGLLEVDVRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHS GSTLASTSLSTLSTTS  M+VGTTTATTT SGD R +GEAQDAMALCDDEGRGPTTQ                         V TALLRRGADPSKKNRLGQTAAMCAVLAGRAGALREIRKAVLLGHSSSK KEQEEL DLGH+AIREGHV CLRVLTESCSEQ
Sbjct:  604 VSKGLDVNGVDPQNGWTPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATNLLENNASPVVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAETASKRSRTIDAFAAVAMASGVTHAVEPVVDA-DKDENRSGGRQGSEKPGAGXXXXXGDGLVGLEGITTPEVASADVAEPAVVGEGGSDHNTPDDAGSARGDRGLGAADGGASELQGGRPHSATTVGEKAGSTGSDASVDGGGRGGDAVSVQSNASSRASASLEALSRRASKAGVAMDLNVIMLEDLVPRHWDDDDIRCAVALAERGEAWCLASLFALGLDPDCQHPDSGDTIGIAAARGGDRETLEVCLETGVSFATKNRRGRSALHAAVVRDDLEVAALLLANPGLSGIEVDDLCDPDEDGRTPLHEMAARGEAPTVLLLATEADSEWTTGGSGGAATGSGNASLDTRSEDASSAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGGVGGENGARMGSGSSIPVSGGDTGVADGNTGDGAKRMSDIAAVASAAAAPDTPATSSVRSPLPLSAFVAPSLADTEELRDLRHHHHDVTNAAGKAERPEGVAMDTGRAGSTSTSTNVNSRSSLARKASSSGDTRDTARSGGNHSDDGGDXXXXXGGREVRSEGEEGDDPSGWGGLLEVDVRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHSRGSTLASTSLSTLSTTSSPMVVGTTTATTTFSGDRRASGEAQDAMALCDDEGRGPTTQ-------------------------VVTALLRRGADPSKKNRLGQTAAMCAVLAGRAGALREIRKAVLLGHSSSKGKEQEELSDLGHMAIREGHVGCLRVLTESCSEQ 1484
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5811.16270.1 vs. uniprot
Match: A0A6H5KLN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN4_9PHAE)

HSP 1 Score: 613 bits (1580), Expect = 3.240e-206
Identity = 383/491 (78.00%), Postives = 396/491 (80.65%), Query Frame = 1 
Query: 1252 MAAKGEAPTVLLLATEADSEWTNGSSGGAGTGSSNASLNTRLDDASSAPGAXXXXXXXXXXXXXXXXXXXXXXXXXXX-DDQAGSVGGDNGPRKGSGSSIPASGGDTGVANGNASDGAKRMSDIAAVASAAAAPDTPAPSSVRSPLPLSAFAAPSLADTEELRDLRHHHHDVTNAAGKAERSEGGAMDTGRAGSTSTSTNVNSRSSLARKASSSGATRDTARSGGNHSDYGGDDHDGSSGREVRSEGEEGGDPSGWGGLLEVDVRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHSWGSTLASTSLSTLSTTSXXMIVGTTTATTTISGDSRRNGEAQDAMALCDDEGRGPTTQARKERLDISRKATVALAPFLPHTNQVATALLRRGADPSKKNRLGQTAAMCAVLAGRAGALREIRKAVLLGHSSSKDKEQEELPDLGHIAIREGHVACLRVLTESCSEQ 2721
            MAA+GEAPTVLLLATEADSEWTNGSSGGAGTGS NASL+TR D ASSAPGA XXXXXXXXXXXXXXXXXXX        DD AG VGGDNG R+GS SSIP SGGDTGVA+G A DGAK+MS++AAVASAAAAPD PAPSSVRSPLPLSAFAAPSLADTEELRDLRHHHHDVTNAAGKAER EG A+DTGRAGSTSTSTNV+SR SLARKASSSG T DT RSGGNHSDYGG DHD SSGR+VRSEGEEG DPSGWGGLLEV+VRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGH WGSTLASTSLSTLSTTS  MIVGTTTAT TISGDSR +GEAQDAMALCDDEGRGPTTQARK RLDI RKAT+AL                                                        SSK KE EEL DLGHIAIREGHVACLRVLTESCSEQ
Sbjct:    1 MAARGEAPTVLLLATEADSEWTNGSSGGAGTGSGNASLDTRSDYASSAPGAGXXXXXXXXXXXXXXXXXXXTAASSVFVDDHAGGVGGDNGAREGSRSSIPVSGGDTGVADGKAGDGAKKMSNVAAVASAAAAPDMPAPSSVRSPLPLSAFAAPSLADTEELRDLRHHHHDVTNAAGKAERPEGVAIDTGRAGSTSTSTNVSSRISLARKASSSGDTGDTERSGGNHSDYGGGDHDDSSGRKVRSEGEEGDDPSGWGGLLEVNVRCSGSGNCPLHEAAASGKVGAVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHLWGSTLASTSLSTLSTTSSSMIVGTTTATATISGDSRGSGEAQDAMALCDDEGRGPTTQARKGRLDIYRKATLAL------------------------------------------------------RKSSKGKEHEELSDLGHIAIREGHVACLRVLTESCSEQ 437
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5811.16270.1 vs. uniprot
Match: A0A6H5KKE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE4_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 4.280e-62
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 1 
Query:   79 RDELARLLTSRSGTMVNVGDAGGVTPMHLAAAGGWEKCATNLLENNASPIVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAKTASKRSRTIDAFAAVAMASGVTHAVEPVVDAVDKDENR 441
            RDELARLLTSRSGTMVNVGDAGGVTP+HLAAAGGWEKCATNLLENNASP VKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAKTASKRSRTIDAFAAVAMASGVTHAV+PVVDA DKDENR
Sbjct:  220 RDELARLLTSRSGTMVNVGDAGGVTPIHLAAAGGWEKCATNLLENNASPAVKNNKGQVPAVVAMLHGHASTGKKLLQAFSAAKTASKRSRTIDAFAAVAMASGVTHAVKPVVDAADKDENR 340
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5811.16270.1 vs. uniprot
Match: A0A7S3AKB2_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AKB2_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.920e-6
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:    7 KGLDVNGVDPQNGWTPVHYACHNGRDELARLLTSRSGTMVNVGDAGGVTPMHLAAAGGWEKCATNLLENNASPIVKNNK 243
            KG DV+ VD +    P+H+   +GR E+  LL        N  +AGGVTP+ LAAAGGW+ C T LL+N A   +   K
Sbjct:  741 KGGDVHCVDDEKRNNPLHWVSRDGRPEMICLLLEHRAD-ANHKNAGGVTPLMLAAAGGWDDCVTLLLKNGADSKIATPK 818
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5811.16270.1 vs. uniprot
Match: A0A7S0ET19_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ET19_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 2.550e-6
Identity = 29/89 (32.58%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    1 VSKGLDVNGVDPQNGWTPVHYACHNGRDELARLLTSRSGTMVNVGDAGGVTPMHLAAAGGWEKCATNLLENNASPIVKNNKGQVPAVVA 267
            +  G +V   D +   + +H+A  +GR E+  +L    G  V+  +  G+TP+H+AAA GW+ C   LLE  A   + + +G  P  VA
Sbjct:    9 LDAGANVAHCDKEQQNSALHWAARDGRVEMLTVLLEEDGARVDGKNGVGLTPLHMAAAYGWDDCVPVLLEAGADSSLVSGQGLTPLQVA 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5811.16270.1 vs. uniprot
Match: A7TEV8_VANPO (Uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=A7TEV8_VANPO)

HSP 1 Score: 56.2 bits (134), Expect = 5.820e-5
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:    7 KGLDVNGVDPQNGWTPVHYACHNGRDELARLLTSRS-GTMVNVGDAGGVTPMHLAAAGGWEKCATNLLENNASPIVKNNKGQVP 255
            KG+D++ +   +GWTP H AC  G   + ++L  R     + +  A GVT +HLA +         LL+N AS  VK+ K Q+P
Sbjct:   63 KGIDIDQLSDNSGWTPFHIACSVGNLNIVKMLYERDVAPDLGLPTAQGVTALHLAVSKKHNDVVKFLLDNGASVRVKDKKLQLP 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5811.16270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G483_ECTSI0.000e+083.68Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KLN4_9PHAE3.240e-20678.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKE4_9PHAE4.280e-6296.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3AKB2_9EUKA1.920e-643.04Hypothetical protein (Fragment) n=2 Tax=Haptolina ... [more]
A0A7S0ET19_9EUKA2.550e-632.58Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A7TEV8_VANPO5.820e-535.71Uncharacterized protein n=1 Tax=Vanderwaltozyma po... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5811contigEcto-sp13_S_contig5811:306..8817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score1305.0
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7G483
Model size2721
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size2721
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5811.16270.1prot_Ecto-sp13_S_contig5811.16270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5811 306..8817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463807.0421627-CDS-Ecto-sp13_S_contig5811:305..4431681463807.0421627-CDS-Ecto-sp13_S_contig5811:305..443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 306..443 -
1681463807.0662992-CDS-Ecto-sp13_S_contig5811:1105..12531681463807.0662992-CDS-Ecto-sp13_S_contig5811:1105..1253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 1106..1253 -
1681463807.0778754-CDS-Ecto-sp13_S_contig5811:1743..20061681463807.0778754-CDS-Ecto-sp13_S_contig5811:1743..2006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 1744..2006 -
1681463807.0886722-CDS-Ecto-sp13_S_contig5811:2168..31141681463807.0886722-CDS-Ecto-sp13_S_contig5811:2168..3114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 2169..3114 -
1681463807.1008403-CDS-Ecto-sp13_S_contig5811:3320..34311681463807.1008403-CDS-Ecto-sp13_S_contig5811:3320..3431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 3321..3431 -
1681463807.134602-CDS-Ecto-sp13_S_contig5811:4119..42221681463807.134602-CDS-Ecto-sp13_S_contig5811:4119..4222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 4120..4222 -
1681463807.1480188-CDS-Ecto-sp13_S_contig5811:4768..48631681463807.1480188-CDS-Ecto-sp13_S_contig5811:4768..4863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 4769..4863 -
1681463807.158386-CDS-Ecto-sp13_S_contig5811:5646..57111681463807.158386-CDS-Ecto-sp13_S_contig5811:5646..5711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 5647..5711 -
1681463807.1712992-CDS-Ecto-sp13_S_contig5811:6162..65711681463807.1712992-CDS-Ecto-sp13_S_contig5811:6162..6571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 6163..6571 -
1681463807.1815228-CDS-Ecto-sp13_S_contig5811:7348..75421681463807.1815228-CDS-Ecto-sp13_S_contig5811:7348..7542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 7349..7542 -
1681463807.1995604-CDS-Ecto-sp13_S_contig5811:8105..82771681463807.1995604-CDS-Ecto-sp13_S_contig5811:8105..8277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 8106..8277 -
1681463807.215347-CDS-Ecto-sp13_S_contig5811:8740..88171681463807.215347-CDS-Ecto-sp13_S_contig5811:8740..8817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5811 8741..8817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5811.16270.1

>prot_Ecto-sp13_S_contig5811.16270.1 ID=prot_Ecto-sp13_S_contig5811.16270.1|Name=mRNA_Ecto-sp13_S_contig5811.16270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=907bp
VSKGLDVNGVDPQNGWTPVHYACHNGRDELARLLTSRSGTMVNVGDAGGV
TPMHLAAAGGWEKCATNLLENNASPIVKNNKGQVPAVVAMLHGHASTGKK
LLQAFSAAKTASKRSRTIDAFAAVAMASGVTHAVEPVVDAVDKDENRSGE
GQGSEKPGAGGGGGARYGLVGIEGITIPEVATGDVAEPAVAGEGGSGHST
LDDMGSARGDRGLGAANGGGSELQDGKPHPATTVGEIAGSSGSDAGVHGG
GRGGDAVPVQSNASSRASASLEALSRRASKAGVAMDLNAIMLEDLVPCHW
DDDDIRCAMALAERGEAWCLASLFALGLDPDCQHPDSGDTIGIAAARGGD
RETLEVCLETGVTFATKNRRGRSALHAAVVRDDLEVAALLLANPGLSGIE
VDDLCDPDEDGRTPLHEMAAKGEAPTVLLLATEADSEWTNGSSGGAGTGS
SNASLNTRLDDASSAPGAGGGGGDDSSSGDNFSSSCVTAASSAVVDDQAG
SVGGDNGPRKGSGSSIPASGGDTGVANGNASDGAKRMSDIAAVASAAAAP
DTPAPSSVRSPLPLSAFAAPSLADTEELRDLRHHHHDVTNAAGKAERSEG
GAMDTGRAGSTSTSTNVNSRSSLARKASSSGATRDTARSGGNHSDYGGDD
HDGSSGREVRSEGEEGGDPSGWGGLLEVDVRCSGSGNCPLHEAAASGKVG
AVLSLLDLGADVSVANGCGDTALHVAVGPNAPRDPMDEGHSWGSTLASTS
LSTLSTTSSSMIVGTTTATTTISGDSRRNGEAQDAMALCDDEGRGPTTQA
RKERLDISRKATVALAPFLPHTNQVATALLRRGADPSKKNRLGQTAAMCA
VLAGRAGALREIRKAVLLGHSSSKDKEQEELPDLGHIAIREGHVACLRVL
TESCSEQ
back to top

mRNA from alignment at Ecto-sp13_S_contig5811:306..8817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5811.16270.1 ID=mRNA_Ecto-sp13_S_contig5811.16270.1|Name=mRNA_Ecto-sp13_S_contig5811.16270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5811:306..8817- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCTAAAGGTTTGGACGTCAACGGGGTCGACCCGCAGAACGGCTGGAC
TCCGGTGCACTACGCCTGCCACAATGGGTGAGGGTGCCGTTCCGCAAGTC
CACTTCGCCGTCACATCACCAAACCATTATCGTATCGTTCGCGAAAATCA
CTTTTTGCATAATCGCGCCCGTGCGTTTGCGCCAGCGGTGACAGTTTCGA
AGCTCGGATCCAACGTCGAAAGTTGTTAAAGAGAAGGAAAACCTTAGACG
CTGCAGCACGATCTACAGTATGACATGCGCCTTTGGAAGGGTCCAAGTAC
ATCGCAAATTCGGGTTCTTCGTGCTGCAAGTTGTTGGCGCCGCCGTGCGG
TTTCACTGCCTCCCTAACCCCCATGACCGGATAGTCCAAGGGAAACTATT
CGTTAGCATTTGAACGGTGCCAAAACCAACGTTTTCCTCCAGCTTTGCAA
TGTATCACTCGTAACAACTGACAGTCATTCCCCGACACTACGCAACGACG
ACGATGACGACAACGATAACGACAACGACCAACGCTGCAGGAGGGATGAG
TTGGCCCGTTTACTCACCAGTAGGTCCGGCACAATGGTAAACGTCGGCGA
CGCGGGTGGCGTCACCCCCATGCACTTGGCGGCTGCGGGGGGGTGGGAGA
AGTGCGCAACGAACCTCCTAGAGAACAACGCCTCGCCAATCGTCAAAAAC
AACAAGGGGCAGGTGAAAACTATTGAGATCCATCGGAAACAATGACGCCA
CTTTCTGCTTTGCCACCTGTGTGAAGCTCTTAGCCCTGCGTACAATCTTC
GCGATCGTTTCTAGAATAGATCAGCTTTTCTCCCTGCTGCATATTCCACA
ATGTTTACTGGCCGATTTGTTCACCCTCAAGTCAAAACAGGACGCTTTGT
TGCACTCCATCCGAAGCACGTCGTCGCCTGACACAGGTGTTTTTTTGTTT
GGTCTACAGGAGCGTGGTGGACTCTAAAATAGATGGGCATCACCCATCAA
TAGTTCATCGTGACGTGTGCCAACCACTTGCACAAGGAATATACTTATCC
CCTACTTCGAAGTACTTTGAGCCAAATCTTCAAAGTGTGTGGGAAGGATG
AATGGAGCCGTAAGCCGATATGGACTTTCATCGAAATCGCTTTTGCTCTG
TGCGGGGAGGTCGCGACCATAGAACGATCGATGCCTGGTTTGGGCCGTGG
TTGCTCGCTATTCCCCATCCGCCAACCGGACACGCCCCCAACACAACACG
ACACGACACGACACGAACCCGTCAGGTCCCAGCCGTTGTCGCGATGCTCC
ACGGCCACGCGTCCACTGGAAAGAAGCTTCTCCAAGCCTTCTCGGCGGCG
AAGACGGCCTCTAAGCGCTCCCGAACCATCGACGCTTTTGCAGCGGTGGC
GATGGCATCGGGCGTCACACACGCCGTCGAACCGGTGGTCGACGCCGTCG
ACAAAGACGAAAACCGAAGGTAGGGCAAGAGTGCTGTACTTCATCCATGT
CAAGGGCAGTAGTAGCAAGTGTCAGCACACTCATGTAGCAACGTTATCGA
TTCACGTAGACTTGGGCGTGTCGCCACGGCACCCGCAAAATAAATGAAAC
GAAGGCATGACACCATGAGGAGAGAAGCTTGGGTTTCTCAAACATACTCG
CGAAATTTATCGCCAGAAGCTGCACTACAAATAGCCATGCCGGCCGACGG
AGGCAGTGTCGATAGCATCAGCAACACCAGTAGCCGCAGGTACAACAATT
TCCAATAGTGTTTGAATATCGGCGAGGGGATCAGATTTCTTATCAGCTCC
AAAGACTGAGCGCAGACACTTTGTGTGCTAGAGTGAGTGGCGTGGTGACG
GCTCTCTTACTTTCAACGGCGTACCGCTTGACGCTCGATGGTGCTCCTCT
TCGCTGCGAAACGTCTGCAGCATTACCATCTAACGGTGCTGCTGAGATTT
CCCAAACTTGAAACGGCTCTGACGAATACAGCATACGACATTGACTTTTG
AAACTATCGTTGCTTGTAAACCCCAGTGCTTATATCCTTCATCCGTCGAA
TGTCTATGAACACTGCGAAAATAGTTGAAGACAAGGGGCTCTCCCTCCTA
TCACCCTGGCCCAAACACCACCCTTCCCACCCAAGCAGCAGCGTCGGCAG
TGGCCCCGGGGGGCGGAGGATGTTGCAGCTAGCGTCCGCTGTTCTTGCCG
CGGACGCGGCTGCCACGGTTGACACTACCGCTCAAAACGATGCGAGCGGA
GAGGGACAGGGGTCGGAGAAACCCGGGGCTGGGGGAGGCGGGGGCGCGAG
ATATGGTCTCGTCGGCATTGAAGGAATCACGATCCCGGAGGTGGCAACGG
GAGATGTCGCCGAGCCTGCTGTTGCTGGAGAGGGGGGCAGCGGCCACAGT
ACCCTGGACGATATGGGCAGTGCTCGTGGCGATCGTGGTTTGGGGGCGGC
GAACGGGGGCGGGAGTGAGTTGCAAGACGGTAAGCCTCACCCTGCTACCA
CTGTCGGCGAAATAGCAGGAAGTTCGGGCAGCGACGCTGGCGTTCACGGA
GGTGGCCGCGGGGGCGACGCCGTGCCGGTGCAGAGTAACGCGAGCTCGCG
GGCATCTGCGTCGCTGGAGGCGCTCAGCAGACGGGCCTCGAAGGCCGGGG
TAGCGGTGAGACAACGAACGATAGGTTTCGGGGGAGGGTATGTGCACACA
CGAACACAAAAGGAGTGATGGTTGGCCCTGTTAAGGCTGTCATCGTTGGT
CATCGCCCAGCATATACATAGGTAGTAAACATCACCAAAACTGGGGTGGG
TGAGTCTCAGAGCTCCCACCATCCGAAGCACTTGAGGCACTTGAACGTCA
CAAGATTTTTCGTGGTACAAGCGATGGCTGGCCGTTGAACATGATGAAGA
ACAACGGAACACATGTCCTTATACGTACGACATAGTATGATGCGACAGAA
TTTTATATGTAGCATCGGAAATGCAGCTCGATTCAGATTGATCGATGGCC
AAGTGGACATGGCACAGTCTAGCTCAGTATGATGATGCACGCATGAAATA
TCGTATGGAATGTGACCTTCGATTTGATGCGATGCACCGTGATGTGATCT
GACCAGATGGACCTCAACGCCATCATGTTGGAAGATCTTGTTCCCTGCCA
CTGGGACGACGATGACATACGGTAAGCTGCGTTGCTGTGGTAGTGCGGTT
CAAGCCTATGTCGCCCGCAACGTTCATTGTTGCCTCGCTGGCCATTTCAG
GTGTATCATTATTCCTGGCTCGGCTCCACTCTGCTTTTGCGGCGGGAGCT
GCCCTCTCACGTGTGTAAGAGCGTCGCTCATGCGCGATATCTTGCGCGGA
GTTGTCACGATGTACGCTAGTTCTACCGTTTCAGGCAATTCTTCCAAGGC
ATGCCTTTTGTGTACTGCCACTGTTGTAACACTCTATTACTACTTTCACG
GGTTGGCTGATCCCTGGACCCCTAGTTGTCTATTTCCCCCGTGGTCACCG
TGCGAATTGCGTTCGACGCCATCCAAGCGCAGTGAGCCCAGACAATGCAA
CTCGCAGCAATACGATGGACCAAGAACACTGCAGAACCTTGTCGTGGTAC
TCGTCCCACAAGCCGTGCTTAGCACGGCTGTAAATCTTAGGCCGAGTGAA
CTTCCCCCACCGGACAAGTGTCGCTTCAAGATTCCTTTTTACTCGGTGCC
CTAGTAAGGGGAGGGGATGAAGGGAGGAGGGATCTCATGTAGAGACAGAT
GCTTCCCAGCTTCGCCAAGTCTCCGATTCGGTTGTAAGTAGAGAAGGAAA
AAACTCTTTCAGGTGGCCAAGTACAACGCGTTTTTTTGTAGTACTGACGC
ACCTCTATCCAGACTGTGTTTGCTCTCCAGCTGAAACCATGATGGCAACG
GGAGTGACATGAAGGCGATAATCCGGATGATCTACAATTTACCCTTGCTT
ACAGGTGTGCCATGGCATTAGCAGAGAGGGGGGAGGCGTGGTGCCTGGCG
AGCCTGTTCGCCCTCGGCCTTGATCCCGACTGCCAACACCCCGACTCCGG
TAAGCGGCTTCTATATCTTCCGTTAGACCGAAGGGTTATTTGTTACCGCG
AGCAGATGGTGCCTGGAGAAACAAGACCTGAACAAAGGTTGAAAGGTTGA
TCAAGATTCCACGACAAATTTTCCACGACAACAAGAAACAACTTTTCGCA
CTTGCTCGCCGCATCCACCGAATATGACGGACTCGCCCCTTCTCGTAGTA
CTCATTCCTCTTCAACCCTGACCCATGACGAATTTGTAGGTTGTAGTGTA
GACGTCAACACCAACGTGGTTGGAGGCTAGCGTTGTATTTTGTCGTCATG
TGTACCACACCGCACTCATGTATTTGATGCTGCATTCACTTGTACTCTTC
ACAGATATGAATATGTGTAACTTCTATGGACTGCACGGGTATTCGAAAGA
GTGTACTCTCTCAACCAAACACACAGGCAGGGAATACTTGTCGACTGTGC
TTGTCGACTACGTATTCCCCCCGCCCTCAACAACCAACTGAAACCCCTCT
CCCCGCCCTATTACCTGCTGTAATTCCCCCCCACCATTGCACAAGGGGAC
ACTATCGGTATCGCTGCCGCGCGTGGGGGGGATCGCGAGACGCTGGAGGT
TTGCCTGGAAACGGGGGTGACCTTCGCGACCAAGAACAGGCGGGGGAGGT
AATGACAGAATCACGAGTGCTGAATATCTCCTGGCAAGGTCTGAGTTGCT
TTTGAGCAGTGAAGGGCGTGGATTGTCCTCGCCCCGTCTGCTACGGTGTG
ACCAAACGACTTGTAACATCTAGAACGATCCGTCCGTTCGGCGGTGGCGT
AGTTCCCGGTTCCTTATTCCTCCCGTACACCCCGTCTGTTCCGTTCCATA
TCCCTTCCGACGGGAGAAAGGATGCATGCCCATGTTCTTGCAAGTTGACG
TCGCTTCCACTCCATTGGTGAAAGAAGCGTTCCGGCTAGCAGCATCTCTG
CAGACTCGACCCTGTTTCTCCTTGCTACGAATGCCCTTTACACGAGCTTC
CGTAGTTCCTTACCTGACTCGCTCGGACCGTCACGAAATCCGTTTATGCT
GTTCGAGTGGTGCTGCTGAGCATGCATCACCACGGCTGTTGAGGCGGTCC
TTTCGAACTCCTTTGTGATTTACACCACGAACAACTCCTCGTGTGAAAGA
AAAACGAAGTTGGCCGAGACCGCATTTTGAGGGCGGGGGGATAAAGGCTA
TGCTGTACACGCGAACACTAGACACTTCATTTGATAGTCCAGCTCGCGGC
CGTGAAGTGTTCCACACCACCTCCCGATATCTGGCTGTTTTCTGGGTGGG
TAACGAGACAAACCCCGCATCACGCACACTTGTCAGGTCTGCCCTTCACG
CTGCCGTGGTGCGGGACGACCTGGAGGTGGCGGCTCTTCTTCTGGCTAAC
CCAGGCCTTTCGGGGATCGAAGTGGATGATCTTTGCGACCCAGACGAGTG
AGCCCTCGCCCGTTCGCTCCTCCTCCTAGCTAACTAACCTCGTAGCTCTC
CGTCTAGGCAGGCAGCCGTCACAGGCCCCACCATCTCTTCGCTCTACACA
AACCAATCGGCTGATTGGCTATGCATTCCCTTACCCGCCCTTCGTGCACA
CAATACACCACCCCACGTCGTACGTCCGTTTTGTCCTGGAACGTTACACA
TAGGGACGGGCGCACTCCTCTCCACGAGATGGCCGCCAAAGGGGAAGCCC
CCACTGTGCTCCTTCTCGCCACTGAGGCTGACAGCGAATGGACCAACGGC
AGCAGCGGCGGTGCGGGCACCGGGTCCAGCAACGCCTCCTTGAACACTCG
CCTCGACGACGCGAGCTCTGCGCCCGGTGCGGGTGGCGGCGGTGGCGATG
ACAGCAGCAGTGGTGATAACTTCTCGTCGTCGTGTGTTACGGCAGCATCT
TCCGCGGTTGTCGACGACCAGGCCGGTAGCGTCGGAGGCGACAATGGTCC
GCGCAAGGGCAGCGGGAGCTCGATTCCCGCATCCGGCGGCGATACTGGGG
TTGCCAACGGGAATGCCAGTGATGGTGCCAAAAGGATGTCCGACATTGCT
GCGGTCGCTAGTGCTGCTGCTGCCCCGGATACACCGGCGCCATCCTCCGT
GCGGTCGCCACTACCCCTATCAGCATTCGCGGCTCCGTCTTTGGCCGACA
CCGAGGAACTTCGGGACCTCCGGCATCATCATCATGACGTTACAAATGCC
GCCGGCAAAGCTGAACGGTCGGAAGGAGGGGCCATGGACACGGGAAGAGC
TGGATCTACTTCAACGAGCACCAACGTCAACAGTAGGAGCTCACTTGCCA
GAAAGGCCTCCAGCAGTGGAGCCACCCGAGACACCGCGCGCAGTGGCGGC
AATCATTCCGACTACGGCGGCGACGACCACGACGGCAGCAGCGGTAGAGA
GGTTCGAAGCGAAGGAGAAGAGGGCGGCGACCCGTCCGGGTGGGGCGGTC
TGCTGGAGGTGGACGTCCGGTGCTCTGGATCGGGGAACTGTCCCCTTCAC
GAAGCGGCCGCTTCCGGCAAGGTCGGGGCCGTGCTTTCCCTGCTCGACCT
CGGAGCGGACGTGTCCGTGGCAAACGGATGCGGCGACACGGCTCTTCATG
TAAGCGCAATCTTTTGGGTTTTGTTGATGGAACCGTTCAGTGGTTGTTGT
CCTCGTCCATGCCCCTGTGGGTGGTCCTTCGATTGGCCGTCTCTAAAAAT
ATTTAACGCACGCACGTGATCAAAATCTCCAACTACTGGCGCATGTCGTG
CCATACTGCAGGTGGCGGTGGGACCCAATGCACCCCGTGATCCGATGGAC
GAGGGCCACTCGTGGGGCTCCACGCTGGCGTCGACATCACTATCGACCTT
GTCGACAACTTCGTCCTCGATGATCGTGGGCACCACTACCGCTACCACCA
CCATTTCCGGCGACAGTAGAAGAAACGGTGAAGCGCAGGACGCGATGGCA
CTCTGCGACGACGAAGGGAGGGGACCTACCACTCAGGCGAGGAAGGAGCG
GCTCGACATTTCTCGAAAAGCGACGTTTGCCCTAAGAAAACCCTCGTGAG
GGCAGCGTACTACGAATGATCCTTTTCCCCGAGGATACAAAAGCGATCGT
CCTTCTTAACACAACGCTGGCGGGTGGTGACGGCCGTCTTGGGCTCGCGC
GCCTACCATCTTCACCCTTCCTCTTTCGCCTTCGTCCTACGTCTAGACTC
GCATTCTGAAACCACCCTTTCATGTACCCCGTGGCCAGAAAGGGAGGCCT
GATTCCAATATAACAGGTTAGACCGACCTTTCTTCGGTGTTGGTTTCATC
GATGATCCGAAAGACAAACAATTTTTAATTTGACCCCGTTGATCGACTCT
CAACTCTGCAAGCTTTGGTCCAAGTTAGCATCTCAGGAACATCAATTACT
TGTGCATTGCCTTCGTCGTGCTCCAACAGGTACTGACGGTTTTCCTTTGG
CGAGAGCGACTCACCCTTCCACGAAATACTCACCAGTACACAAGGCCCGT
TGAAACCTGCTTAGAGTTGCGCTGGCTCCCTTTCTGCCCCACACCAATCA
GGTGGCGACGGCTCTCCTCCGGCGAGGAGCTGACCCTTCCAAGAAAAACC
GCCTGGGTCAGACGGCGGCTATGTGCGCGGTGCTTGCGGGTCGCGCCGGC
GCTCTGCGAGAGGTGGGAACAAAACAAGAATGGGATTCCAGCTGAGAAAC
TACTTTCATCGCCAAACCTGGAAATCGCTCACATATCAGTTTTGTTGACC
GTAGGTATACGTAATAACCTGTGTCAGGCGTTCGGCTAGCGTATGGTAGG
CGAACCGTCTCGGGTACAACTCACCACGTGAATTTATCAGTTCTAGGGTT
AAGATTTTGATGAAGGTATGGGGTATAAATGTTCACAGCCTATCCATGCA
TGTTCACAGTCTCTTCATATATAAAGACTGTGTCGTGAGTGCACTACGGT
GCCGACCTCCTTACAGTGTCTAACGACGAGGCACAGGCCGAGGCAAATGC
ATGTCGTGCTCCTGCAAGAACCCTTCGAAGGTGAGCATGTGCGACCTGTT
CCAGGCGAACCAATATGGTAGCCCTCGACACCGCGATGGAACTCGAGACG
AAGCAGACTGTAGGCTGTGTACGAAGTGTCAAGACGCTGTATCTCCGCCG
AGCTCTCTTACTTAACAATATATACTGTGAATCTAGAAACTATACGGACT
CTGCAGGATAAACCTTTTTCTTGGACTTGACGGTGCTCTTATTGATGGTT
CTTGCAAACCACTGACACACCCTTGAACGAGCCACAGAACATTTCAACGG
TACCCATCACTTCCTGTTTTTCAGATAAGGAAGGCTGTGCTTCTTGGGCA
TTCAAGCAGTAAGGACAAGGAGCAGGAGGAGCTGCCCGACCTCGGGCACA
TAGCCATCCGCGAGGGCCACGTCGCGTGCCTTCGTGTCCTCACCGAGAGC
TGTAGTGAGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5811:306..8817-

>mRNA_Ecto-sp13_S_contig5811.16270.1 ID=mRNA_Ecto-sp13_S_contig5811.16270.1|Name=mRNA_Ecto-sp13_S_contig5811.16270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5811:306..8817- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCTAAAGGTTTGGACGTCAACGGGGTCGACCCGCAGAACGGCTGGAC
TCCGGTGCACTACGCCTGCCACAATGGGAGGGATGAGTTGGCCCGTTTAC
TCACCAGTAGGTCCGGCACAATGGTAAACGTCGGCGACGCGGGTGGCGTC
ACCCCCATGCACTTGGCGGCTGCGGGGGGGTGGGAGAAGTGCGCAACGAA
CCTCCTAGAGAACAACGCCTCGCCAATCGTCAAAAACAACAAGGGGCAGG
TCCCAGCCGTTGTCGCGATGCTCCACGGCCACGCGTCCACTGGAAAGAAG
CTTCTCCAAGCCTTCTCGGCGGCGAAGACGGCCTCTAAGCGCTCCCGAAC
CATCGACGCTTTTGCAGCGGTGGCGATGGCATCGGGCGTCACACACGCCG
TCGAACCGGTGGTCGACGCCGTCGACAAAGACGAAAACCGAAGCGGAGAG
GGACAGGGGTCGGAGAAACCCGGGGCTGGGGGAGGCGGGGGCGCGAGATA
TGGTCTCGTCGGCATTGAAGGAATCACGATCCCGGAGGTGGCAACGGGAG
ATGTCGCCGAGCCTGCTGTTGCTGGAGAGGGGGGCAGCGGCCACAGTACC
CTGGACGATATGGGCAGTGCTCGTGGCGATCGTGGTTTGGGGGCGGCGAA
CGGGGGCGGGAGTGAGTTGCAAGACGGTAAGCCTCACCCTGCTACCACTG
TCGGCGAAATAGCAGGAAGTTCGGGCAGCGACGCTGGCGTTCACGGAGGT
GGCCGCGGGGGCGACGCCGTGCCGGTGCAGAGTAACGCGAGCTCGCGGGC
ATCTGCGTCGCTGGAGGCGCTCAGCAGACGGGCCTCGAAGGCCGGGGTAG
CGATGGACCTCAACGCCATCATGTTGGAAGATCTTGTTCCCTGCCACTGG
GACGACGATGACATACGGTGTGCCATGGCATTAGCAGAGAGGGGGGAGGC
GTGGTGCCTGGCGAGCCTGTTCGCCCTCGGCCTTGATCCCGACTGCCAAC
ACCCCGACTCCGGGGACACTATCGGTATCGCTGCCGCGCGTGGGGGGGAT
CGCGAGACGCTGGAGGTTTGCCTGGAAACGGGGGTGACCTTCGCGACCAA
GAACAGGCGGGGGAGGTCTGCCCTTCACGCTGCCGTGGTGCGGGACGACC
TGGAGGTGGCGGCTCTTCTTCTGGCTAACCCAGGCCTTTCGGGGATCGAA
GTGGATGATCTTTGCGACCCAGACGAGGACGGGCGCACTCCTCTCCACGA
GATGGCCGCCAAAGGGGAAGCCCCCACTGTGCTCCTTCTCGCCACTGAGG
CTGACAGCGAATGGACCAACGGCAGCAGCGGCGGTGCGGGCACCGGGTCC
AGCAACGCCTCCTTGAACACTCGCCTCGACGACGCGAGCTCTGCGCCCGG
TGCGGGTGGCGGCGGTGGCGATGACAGCAGCAGTGGTGATAACTTCTCGT
CGTCGTGTGTTACGGCAGCATCTTCCGCGGTTGTCGACGACCAGGCCGGT
AGCGTCGGAGGCGACAATGGTCCGCGCAAGGGCAGCGGGAGCTCGATTCC
CGCATCCGGCGGCGATACTGGGGTTGCCAACGGGAATGCCAGTGATGGTG
CCAAAAGGATGTCCGACATTGCTGCGGTCGCTAGTGCTGCTGCTGCCCCG
GATACACCGGCGCCATCCTCCGTGCGGTCGCCACTACCCCTATCAGCATT
CGCGGCTCCGTCTTTGGCCGACACCGAGGAACTTCGGGACCTCCGGCATC
ATCATCATGACGTTACAAATGCCGCCGGCAAAGCTGAACGGTCGGAAGGA
GGGGCCATGGACACGGGAAGAGCTGGATCTACTTCAACGAGCACCAACGT
CAACAGTAGGAGCTCACTTGCCAGAAAGGCCTCCAGCAGTGGAGCCACCC
GAGACACCGCGCGCAGTGGCGGCAATCATTCCGACTACGGCGGCGACGAC
CACGACGGCAGCAGCGGTAGAGAGGTTCGAAGCGAAGGAGAAGAGGGCGG
CGACCCGTCCGGGTGGGGCGGTCTGCTGGAGGTGGACGTCCGGTGCTCTG
GATCGGGGAACTGTCCCCTTCACGAAGCGGCCGCTTCCGGCAAGGTCGGG
GCCGTGCTTTCCCTGCTCGACCTCGGAGCGGACGTGTCCGTGGCAAACGG
ATGCGGCGACACGGCTCTTCATGTGGCGGTGGGACCCAATGCACCCCGTG
ATCCGATGGACGAGGGCCACTCGTGGGGCTCCACGCTGGCGTCGACATCA
CTATCGACCTTGTCGACAACTTCGTCCTCGATGATCGTGGGCACCACTAC
CGCTACCACCACCATTTCCGGCGACAGTAGAAGAAACGGTGAAGCGCAGG
ACGCGATGGCACTCTGCGACGACGAAGGGAGGGGACCTACCACTCAGGCG
AGGAAGGAGCGGCTCGACATTTCTCGAAAAGCGACAGTTGCGCTGGCTCC
CTTTCTGCCCCACACCAATCAGGTGGCGACGGCTCTCCTCCGGCGAGGAG
CTGACCCTTCCAAGAAAAACCGCCTGGGTCAGACGGCGGCTATGTGCGCG
GTGCTTGCGGGTCGCGCCGGCGCTCTGCGAGAGATAAGGAAGGCTGTGCT
TCTTGGGCATTCAAGCAGTAAGGACAAGGAGCAGGAGGAGCTGCCCGACC
TCGGGCACATAGCCATCCGCGAGGGCCACGTCGCGTGCCTTCGTGTCCTC
ACCGAGAGCTGTAGTGAGCAG
back to top