mRNA_Ecto-sp13_S_contig5810.16269.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5810.16269.1
Unique NamemRNA_Ecto-sp13_S_contig5810.16269.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.280e-36
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1
Query:    1 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNEVR 180
            MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNE R
Sbjct:  168 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNEER 227          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 7.910e-36
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1
Query:    1 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNEVR 180
            MCGDNNEAKGDILLCDSCDAEYHLSCCTPPL+VCPEGEWFCLTCRKNRGEPVTKLFNE R
Sbjct:  168 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLQVCPEGEWFCLTCRKNRGEPVTKLFNEER 227          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: UPI001F0FF7AC (nucleosome-remodeling factor subunit NURF301-like n=2 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F0FF7AC)

HSP 1 Score: 65.5 bits (158), Expect = 6.110e-11
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   25 KGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNE 174
             G++L+CDSC A +HLSC  PPLK  PE EWFC  C++N+   VT   NE
Sbjct:  361 NGEMLMCDSCPAVFHLSCLDPPLKQVPEQEWFCPICKQNQVMGVTDCVNE 410          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: Q01B57_OSTTA (Zinc finger, PHD-finger n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01B57_OSTTA)

HSP 1 Score: 64.7 bits (156), Expect = 1.140e-10
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   28 GDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNR 144
            G +LLCDSCDAEYH  C  PPL   PEGEWFC TC +N+
Sbjct:  915 GVVLLCDSCDAEYHTKCLDPPLSAEPEGEWFCPTCVRNK 953          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: A0A6P6YHV8_DERPT (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YHV8_DERPT)

HSP 1 Score: 64.3 bits (155), Expect = 1.560e-10
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   25 KGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNE 174
             G++L+CD+C A +HLSC  PPLK  PE EWFC  C++N+   VT   NE
Sbjct:  349 NGEMLMCDTCPAVFHLSCLDPPLKQVPEQEWFCPICKQNQVMGVTDCVNE 398          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: A0A7J7D9B4_TRIWF (Uncharacterized protein n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D9B4_TRIWF)

HSP 1 Score: 63.5 bits (153), Expect = 2.860e-10
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEG-EWFCLTCRKNRG--EPVTKLFNEV 177
            MCG N+     +L+CD+C+  YHLSCC PP+K  PE  EWFC  C KN+   E +++ F+ +
Sbjct:  248 MCG-NSGTTLKLLICDTCEEAYHLSCCKPPIKEIPEDDEWFCQLCLKNKSMKETISRKFSNI 308          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: A0A369KAG9_HYPMA (Protein RCC2 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369KAG9_HYPMA)

HSP 1 Score: 63.5 bits (153), Expect = 2.860e-10
Identity = 24/51 (47.06%), Postives = 29/51 (56.86%), Query Frame = 1
Query:    4 CGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPV 156
            CG         L CD CD+ YHL C  PPL   P+GEWFC+ CR+  G P+
Sbjct:  444 CGKEKGEDDSPLACDKCDSPYHLGCLNPPLTAVPDGEWFCVPCRRAPGAPI 494          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: A0A2P6TT01_CHLSO (Bromodomain adjacent to zinc finger domain 2A n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT01_CHLSO)

HSP 1 Score: 63.2 bits (152), Expect = 3.970e-10
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 MCGDNNEAKGDILL-CDSCDAEYHLSCCTPPLKVCPEGEWFCLTC 132
            +CG ++E  GDILL CDSCD   HLSCC PPLK  P+G+WFC+ C
Sbjct: 1401 LCGQSDE--GDILLLCDSCDNACHLSCCNPPLKRVPKGDWFCVEC 1443          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: A0A2P6V9E3_9CHLO (Bromodomain adjacent to zinc finger domain 2A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V9E3_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 5.420e-10
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 MCGDNNEAKGDILL-CDSCDAEYHLSCCTPPLKVCPEGEWFCLTC 132
            +CG ++E  GD+LL CDSCD   HLSCC PPLK  P+G+WFC+ C
Sbjct: 1077 LCGQSDE--GDVLLLCDSCDNACHLSCCNPPLKRVPKGDWFCVEC 1119          
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Match: A0A0A9Z783_LYGHE (PHD and RING finger domain-containing protein 1 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z783_LYGHE)

HSP 1 Score: 61.6 bits (148), Expect = 7.740e-10
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   16 NEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNEVR 180
            ++ + ++LLCD C+A YHL C TPPL+  P+G WFC  C     E VT   +E R
Sbjct:  185 HDREHEMLLCDRCEAGYHLDCLTPPLRAVPDGSWFCPRCTDPNNESVTHNPDEPR 239          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5810.16269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC98_9PHAE2.280e-3698.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPU7_ECTSI7.910e-3696.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001F0FF7AC6.110e-1154.00nucleosome-remodeling factor subunit NURF301-like ... [more]
Q01B57_OSTTA1.140e-1066.67Zinc finger, PHD-finger n=2 Tax=Ostreococcus tauri... [more]
A0A6P6YHV8_DERPT1.560e-1052.00nucleosome-remodeling factor subunit BPTF-like n=1... [more]
A0A7J7D9B4_TRIWF2.860e-1045.16Uncharacterized protein n=2 Tax=Tripterygium wilfo... [more]
A0A369KAG9_HYPMA2.860e-1047.06Protein RCC2 n=1 Tax=Hypsizygus marmoreus TaxID=39... [more]
A0A2P6TT01_CHLSO3.970e-1062.22Bromodomain adjacent to zinc finger domain 2A n=1 ... [more]
A0A2P6V9E3_9CHLO5.420e-1060.00Bromodomain adjacent to zinc finger domain 2A n=1 ... [more]
A0A0A9Z783_LYGHE7.740e-1045.45PHD and RING finger domain-containing protein 1 (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5810contigEcto-sp13_S_contig5810:8597..8779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score134.8
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog2880.D8LPU7
Model size183
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.PHD-finger
EggNOG OGs294SK@1,2RBQ1@2759
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463806.9940925-CDS-Ecto-sp13_S_contig5810:8596..87791681463806.9940925-CDS-Ecto-sp13_S_contig5810:8596..8779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5810 8597..8779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5810.16269.1prot_Ecto-sp13_S_contig5810.16269.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5810 8597..8779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5810.16269.1

>prot_Ecto-sp13_S_contig5810.16269.1 ID=prot_Ecto-sp13_S_contig5810.16269.1|Name=mRNA_Ecto-sp13_S_contig5810.16269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGE
PVTKLFNEVRK
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mRNA from alignment at Ecto-sp13_S_contig5810:8597..8779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5810.16269.1 ID=mRNA_Ecto-sp13_S_contig5810.16269.1|Name=mRNA_Ecto-sp13_S_contig5810.16269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5810:8597..8779+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGGGGATAACAACGAGGCCAAGGGGGACATCCTCCTCTGCGACTC CTGCGATGCCGAGTACCACCTCTCGTGCTGCACGCCGCCGCTCAAGGTGT GCCCGGAGGGCGAGTGGTTCTGCCTCACGTGCCGCAAGAACCGGGGGGAG CCCGTCACCAAGCTGTTCAACGAGGTGCGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5810:8597..8779+

>mRNA_Ecto-sp13_S_contig5810.16269.1 ID=mRNA_Ecto-sp13_S_contig5810.16269.1|Name=mRNA_Ecto-sp13_S_contig5810.16269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5810:8597..8779+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGGGGATAACAACGAGGCCAAGGGGGACATCCTCCTCTGCGACTC
CTGCGATGCCGAGTACCACCTCTCGTGCTGCACGCCGCCGCTCAAGGTGT
GCCCGGAGGGCGAGTGGTTCTGCCTCACGTGCCGCAAGAACCGGGGGGAG
CCCGTCACCAAGCTGTTCAACGAGGTGCGAAAG
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