mRNA_Ecto-sp13_S_contig58030.16255.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58030.16255.1
Unique NamemRNA_Ecto-sp13_S_contig58030.16255.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 8.290e-73
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 1
Query:    1 PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDSGNLE 372
            PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLR+PESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDSGNLE
Sbjct:  869 PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRDPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDSGNLE 992          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 3.740e-72
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1
Query:    1 PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDSGNL 369
            PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEM LKICAHGFALMPKAYLRSAWNILDFVVVVISMIQL+TNDSGNL
Sbjct:  371 PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMTLKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLITNDSGNL 493          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.760e-32
Identity = 63/115 (54.78%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQL 345
            P+++ PG AL  L   N LR+GCAAVV N GF R + LLI +SSL +ALD+PLR+P+S  A+ L  +E  +T LF +E  LK+CA GF  MP AYLR AWN+LDF VV++S++QL
Sbjct:  607 PENIYPGFALCCLSAKNPLRRGCAAVVSNAGFSRLVTLLIVLSSLTVALDTPLRDPDSTAAEALWALELALTFLFVLECVLKVCASGFFFMPLAYLRDAWNVLDFGVVMVSVVQL 721          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 7.040e-32
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQL 345
            P+++ PG AL  L   N  R+GCAAVV N GF R + LLI +SSL LALDSPLR+P+S  A+ L  +E  +T LF +E  LK+CA GF  MP AYLR AWN+LDF VV++S++QL
Sbjct: 1086 PENIYPGFALCCLSAKNPWRRGCAAVVSNAGFSRLVTLLIVLSSLTLALDSPLRDPDSTAAEALGTLELALTFLFVLEGVLKVCASGFYFMPLAYLRDAWNVLDFGVVMVSVVQL 1200          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A7S2QWF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWF6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.820e-27
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   19 GKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDSGNL 369
            G AL  LGP+N  R    +V  +P FD  +L+LI VSS+ LA+D PL +PES T K L  V+++ T LF IEM LKI   GFA   ++YLR +WNILDFVVV IS++ L ++ +  L
Sbjct:  909 GNALMFLGPENPFRVWVTSVCAHPSFDHVVLVLIIVSSILLAVDDPLGDPESTTYKVLAVVDKIFTVLFIIEMMLKIICMGFAFQARSYLRDSWNILDFVVVCISILLLFSDGNAAL 1025          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A0M0K1M8_9EUKA (Sodium channel protein type 9 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1M8_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.110e-25
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTN 354
            P+ L+ G +LF LGP N  RQGC  +  +  FD+FI+LLI  SS+ LA+D P  +P+S     L  +  + TALF +EM LKI A+GF   PKAYL+  WNILDF +V+IS++ L+ +
Sbjct:  810 PEPLE-GVSLFCLGPANGFRQGCRWIAEHSIFDQFIILLIIASSVCLAIDVPRLDPDSELKAQLDRLNLIFTALFVLEMMLKIVAYGFLFTPKAYLKQGWNILDFFIVMISILGLLAD 926          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A8K1FPV2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPV2_PYTOL)

HSP 1 Score: 110 bits (274), Expect = 2.820e-25
Identity = 48/114 (42.11%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   19 GKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDS 360
            G+AL VLGP N +R+   A+VH+P FD+ +L+L+ +S++++ALD+PL  P+SA   +L   +R +T LF +E+ LK+ A G    P AYL++ WN++DFV+ ++S+  L  + S
Sbjct:  901 GRALGVLGPRNWIRKNAWAIVHHPHFDKILLVLVIMSTVSVALDNPLSAPDSAQLNFLAWTDRFLTILFLVEVVLKVIAQGLYFDPNAYLKNNWNVMDFVITIVSVFGLQADSS 1014          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A5A8D5B1_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B1_CAFRO)

HSP 1 Score: 108 bits (271), Expect = 7.250e-25
Identity = 56/118 (47.46%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   19 GKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDSGNLE 372
            G ALF L P N  RQ    +V +  F+  IL+LI VSS+ALALD+PL +P S  + +L+ ++ V TALF +EM LKI A GFAL   AYLR  WNI+DF +V++S++ +   D+  L+
Sbjct: 1567 GNALFFLPPTNPWRQQLGKLVQSDRFENIILVLIVVSSIALALDTPLADPTSDFSVWLRILDIVFTALFTLEMVLKILAFGFALHKNAYLRDPWNIIDFCIVIVSLVSIAAVDNPALK 1684          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN)

HSP 1 Score: 107 bits (268), Expect = 1.800e-24
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   19 GKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMIQLVTNDSG 363
            G+ALF+    + +R+    +V +P FD  IL+LIS+SS++LALD+PL NP+ +  ++LK ++     +F IEM+LKI A+G  +  KAYLR+ WN+LD  +VV S++ LV   SG
Sbjct:  815 GRALFLFSELHPIRRIAHYIVCHPWFDSVILVLISISSISLALDNPLANPDGSLPRFLKRMDNAFAVIFLIEMSLKIIANGLIIHQKAYLRNGWNVLDCAIVVSSIVMLVEESSG 929          
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Match: A0A0M0JV37_9EUKA (Voltage-gated sodium channel alpha subunit n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JV37_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 8.530e-24
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   19 GKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALDSPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAWNILDFVVVVISMI 339
            G +LF LGP+N  R G   +V +P FD FI++LI +SS++LA+D P    +S    YLK    V T  F IEM LKI ++ F   P AYL+S WNILDF +V+IS++
Sbjct:  785 GVSLFCLGPENGFRNGARWLVEHPSFDTFIVILIIISSISLAIDVPRVPDDSELKVYLKNANYVFTFFFVIEMTLKIISYDFLFAPNAYLKSGWNILDFCIVIISIL 891          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58030.16255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE6_ECTSI8.290e-7399.19Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A6H5JIB7_9PHAE3.740e-7298.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI93_ECTSI2.760e-3254.78Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE7.040e-3255.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2QWF6_9STRA6.820e-2749.57Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A0M0K1M8_9EUKA1.110e-2547.46Sodium channel protein type 9 subunit alpha n=1 Ta... [more]
A0A8K1FPV2_PYTOL2.820e-2542.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5A8D5B1_CAFRO7.250e-2547.46Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A2D4C0A0_PYTIN1.800e-2444.35Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0M0JV37_9EUKA8.530e-2447.66Voltage-gated sodium channel alpha subunit n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58030contigEcto-sp13_S_contig58030:19..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score248.1
Seed ortholog evalue2.5e-63
Seed eggNOG ortholog2880.D7FVE6
Model size417
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
Cds size417
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463805.592683-CDS-Ecto-sp13_S_contig58030:18..4351681463805.592683-CDS-Ecto-sp13_S_contig58030:18..435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58030 19..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58030.16255.1prot_Ecto-sp13_S_contig58030.16255.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58030 19..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58030.16255.1

>prot_Ecto-sp13_S_contig58030.16255.1 ID=prot_Ecto-sp13_S_contig58030.16255.1|Name=mRNA_Ecto-sp13_S_contig58030.16255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
PDDLDPGKALFVLGPDNKLRQGCAAVVHNPGFDRFILLLISVSSLALALD
SPLRNPESATAKYLKGVERVMTALFFIEMALKICAHGFALMPKAYLRSAW
NILDFVVVVISMIQLVTNDSGNLESLRSLRTLRALRPLR
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mRNA from alignment at Ecto-sp13_S_contig58030:19..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58030.16255.1 ID=mRNA_Ecto-sp13_S_contig58030.16255.1|Name=mRNA_Ecto-sp13_S_contig58030.16255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58030:19..435- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGATGACCTTGACCCCGGGAAGGCGCTGTTCGTACTCGGGCCGGACAA CAAGCTGCGGCAGGGGTGTGCCGCCGTGGTGCACAACCCCGGCTTCGACC GCTTCATCCTACTTCTCATCTCTGTTAGCTCGCTGGCGCTGGCGCTGGAC AGCCCTCTGCGGAACCCGGAGTCCGCGACTGCCAAGTACTTGAAAGGCGT GGAACGGGTGATGACGGCCCTGTTTTTTATCGAGATGGCCCTCAAGATCT GCGCCCACGGATTCGCGCTCATGCCGAAGGCATACCTGCGGAGCGCGTGG AACATCCTTGACTTCGTTGTGGTGGTGATTTCCATGATTCAGCTGGTCAC GAACGATTCGGGGAATCTCGAGAGCCTGCGGTCTCTGCGCACGCTGCGGG CACTTCGACCACTAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58030:19..435-

>mRNA_Ecto-sp13_S_contig58030.16255.1 ID=mRNA_Ecto-sp13_S_contig58030.16255.1|Name=mRNA_Ecto-sp13_S_contig58030.16255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58030:19..435- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGATGACCTTGACCCCGGGAAGGCGCTGTTCGTACTCGGGCCGGACAA
CAAGCTGCGGCAGGGGTGTGCCGCCGTGGTGCACAACCCCGGCTTCGACC
GCTTCATCCTACTTCTCATCTCTGTTAGCTCGCTGGCGCTGGCGCTGGAC
AGCCCTCTGCGGAACCCGGAGTCCGCGACTGCCAAGTACTTGAAAGGCGT
GGAACGGGTGATGACGGCCCTGTTTTTTATCGAGATGGCCCTCAAGATCT
GCGCCCACGGATTCGCGCTCATGCCGAAGGCATACCTGCGGAGCGCGTGG
AACATCCTTGACTTCGTTGTGGTGGTGATTTCCATGATTCAGCTGGTCAC
GAACGATTCGGGGAATCTCGAGAGCCTGCGGTCTCTGCGCACGCTGCGGG
CACTTCGACCACTAAGG
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