mRNA_Ecto-sp13_S_contig58027.16253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58027.16253.1
Unique NamemRNA_Ecto-sp13_S_contig58027.16253.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: D8LKE0_ECTSI (Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE0_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 5.750e-60
Identity = 112/123 (91.06%), Postives = 113/123 (91.87%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEEEGGGA 369
            LSGAELEDPRGQDA ELLPCSGAFLAIGHKPMTKFLHS +S XXXXXXXXXX       SVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEEEGGGA
Sbjct:  281 LSGAELEDPRGQDAVELLPCSGAFLAIGHKPMTKFLHSISSSXXXXXXXXXXX---XXXSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEEEGGGA 400
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A7M3Y7A7_9ARCH (Thioredoxin-disulfide reductase n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A7M3Y7A7_9ARCH)

HSP 1 Score: 124 bits (310), Expect = 4.040e-34
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEE 354
            L+GA LEDPR   + E + C+GAF+AIGHKP+T FL +                       VE D+ G+++HK+HTMTSV GVFA GDVVD RYRQAI+AAGMGCQAAID E+WL E+
Sbjct:   31 LTGAVLEDPR-DGSTEEISCTGAFIAIGHKPITGFLENQ----------------------VETDDTGYIIHKEHTMTSVPGVFAAGDVVDTRYRQAITAAGMGCQAAIDVEKWLEEQ 125
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A367I9L2_9ARCH (Thioredoxin-disulfide reductase n=13 Tax=Archaea TaxID=2157 RepID=A0A367I9L2_9ARCH)

HSP 1 Score: 127 bits (318), Expect = 3.060e-33
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAE 351
            LSGA LEDPR   + E + C+GAF+AIGHKP+T FL                         +E D+ G+++HK HTMTSV GVFA GDVVD RYRQAI+AAGMGCQAAIDCE+WL E
Sbjct:  215 LSGAILEDPR-DGSTEEIACTGAFIAIGHKPITGFLEGQ----------------------IETDDSGYIIHKDHTMTSVSGVFAAGDVVDTRYRQAITAAGMGCQAAIDCEKWLEE 308
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A6V8DS78_9ARCH (Thioredoxin-disulfide reductase n=6 Tax=Archaea TaxID=2157 RepID=A0A6V8DS78_9ARCH)

HSP 1 Score: 125 bits (315), Expect = 8.180e-33
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEE 354
            L+GA LEDPR   + E + CSGAF+AIGHKP+TKFL +                       VE D+ G+++HK++TMTS+EGVFA GDVVD RYRQAI+AAGMGCQAAID E+WL ++
Sbjct:  214 LTGAVLEDPR-DGSTETMNCSGAFIAIGHKPITKFLENQ----------------------VETDDSGYILHKRNTMTSIEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAEKWLEDQ 308
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A424Q3Z2_9EURY (Thioredoxin-disulfide reductase n=5 Tax=unclassified Euryarchaeota TaxID=115531 RepID=A0A424Q3Z2_9EURY)

HSP 1 Score: 125 bits (313), Expect = 1.690e-32
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAE 351
            LSGA LEDPR     E+  C+GAF+AIGH P+T FL +                       +E DE G++++K+HTMTSV GVFA GDVVD RYRQAI+AAGMGCQAAIDCERWL E
Sbjct:  215 LSGAVLEDPRDGKTEEI-SCTGAFIAIGHTPITDFLENQ----------------------IETDESGYIINKEHTMTSVPGVFAAGDVVDTRYRQAITAAGMGCQAAIDCERWLEE 308
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A835YK56_9STRA (Thioredoxin-disulfide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK56_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.830e-32
Identity = 66/118 (55.93%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEE 354
            L GAE+ D    +A EL P +GAFLA+GHKP+TKFL  S                      VELD +G++V+++HTMTSVEGVFACGDVVD+RYRQAI+AAGMGCQAA+D E+WL  E
Sbjct:  186 LRGAEVTDVVTGEAMEL-PAAGAFLAVGHKPVTKFLKGSG---------------------VELDGEGYIVNRKHTMTSVEGVFACGDVVDKRYRQAITAAGMGCQAAMDAEKWLEGE 281
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A327GYD5_9EURY (Thioredoxin-disulfide reductase n=3 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A327GYD5_9EURY)

HSP 1 Score: 124 bits (312), Expect = 2.280e-32
Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEE 354
            LSGA LEDPR   + EL+ C+GAF+AIGHKP+T FL                         +E D DG++VHK++TMTSV G+FA GDVVD+RYRQAI+AAGMGCQAAID ERWL ++
Sbjct:  214 LSGALLEDPR-DGSEELINCTGAFIAIGHKPITGFLDGQ----------------------LETDSDGYLVHKENTMTSVPGIFAAGDVVDKRYRQAITAAGMGCQAAIDAERWLEDQ 308
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A2A5VIJ0_9ARCH (Thioredoxin-disulfide reductase (Fragment) n=1 Tax=Marine Group II euryarchaeote MED-G35 TaxID=2007296 RepID=A0A2A5VIJ0_9ARCH)

HSP 1 Score: 120 bits (301), Expect = 3.540e-32
Identity = 62/119 (52.10%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEEE 357
            L+GA LEDPR     E+  C+GAF+AIGHKP+T FL +                       +E D +G++VHK++TMT+V GVFA GDVVD+RYRQAI+AAGMGCQAAID E+WL E++
Sbjct:   77 LTGAVLEDPRDGSEDEI-SCAGAFIAIGHKPITGFLENQ----------------------LETDSEGYIVHKKNTMTAVPGVFAAGDVVDKRYRQAITAAGMGCQAAIDAEKWLEEQD 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A327HTY7_9EURY (Thioredoxin-disulfide reductase n=7 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A327HTY7_9EURY)

HSP 1 Score: 124 bits (310), Expect = 4.510e-32
Identity = 64/118 (54.24%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAEE 354
            L+GA LEDPR  D  E+  C+GAF+AIGHKP+T++L                         VE D++G+++HK +TMTSVEGVFA GDVVD RYRQAI+AAGMGCQAAID ERWL ++
Sbjct:  214 LTGAILEDPRHGDEEEI-SCTGAFIAIGHKPITQYLEGQ----------------------VETDDEGYILHKSNTMTSVEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAERWLEDQ 308
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BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Match: A0A327HP13_9EURY (Thioredoxin-disulfide reductase n=4 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A327HP13_9EURY)

HSP 1 Score: 124 bits (310), Expect = 4.510e-32
Identity = 62/115 (53.91%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:    1 LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSXXXXXXXXXXXSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 345
            L+GA +EDPR   + E +  +GAF+AIGHKP+TKFL                         +E D++G+++HK+HTMTS+ GVFA GDVVD RYRQAI+AAGMGCQAAIDCERWL
Sbjct:  213 LTGALIEDPR-DGSTEEISATGAFIAIGHKPITKFLDEQ----------------------IETDDEGYILHKEHTMTSIPGVFAAGDVVDTRYRQAITAAGMGCQAAIDCERWL 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58027.16253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKE0_ECTSI5.750e-6091.06Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7M3Y7A7_9ARCH4.040e-3454.24Thioredoxin-disulfide reductase n=2 Tax=Candidatus... [more]
A0A367I9L2_9ARCH3.060e-3355.56Thioredoxin-disulfide reductase n=13 Tax=Archaea T... [more]
A0A6V8DS78_9ARCH8.180e-3354.24Thioredoxin-disulfide reductase n=6 Tax=Archaea Ta... [more]
A0A424Q3Z2_9EURY1.690e-3255.56Thioredoxin-disulfide reductase n=5 Tax=unclassifi... [more]
A0A835YK56_9STRA1.830e-3255.93Thioredoxin-disulfide reductase n=1 Tax=Tribonema ... [more]
A0A327GYD5_9EURY2.280e-3255.08Thioredoxin-disulfide reductase n=3 Tax=Euryarchae... [more]
A0A2A5VIJ0_9ARCH3.540e-3252.10Thioredoxin-disulfide reductase (Fragment) n=1 Tax... [more]
A0A327HTY7_9EURY4.510e-3254.24Thioredoxin-disulfide reductase n=7 Tax=Euryarchae... [more]
A0A327HP13_9EURY4.510e-3253.91Thioredoxin-disulfide reductase n=4 Tax=Euryarchae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58027contigEcto-sp13_S_contig58027:13..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score198.4
Seed ortholog evalue2e-48
Seed eggNOG ortholog2880.D8LKE0
Model size372
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00384
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.thioredoxin-disulfide reductase activity
EggNOG OGsCOG0492@1,KOG0404@2759
EC1.8.1.9
Cds size372
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463805.4313693-CDS-Ecto-sp13_S_contig58027:12..3841681463805.4313693-CDS-Ecto-sp13_S_contig58027:12..384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58027 13..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58027.16253.1prot_Ecto-sp13_S_contig58027.16253.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58027 13..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58027.16253.1

>prot_Ecto-sp13_S_contig58027.16253.1 ID=prot_Ecto-sp13_S_contig58027.16253.1|Name=mRNA_Ecto-sp13_S_contig58027.16253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
LSGAELEDPRGQDAAELLPCSGAFLAIGHKPMTKFLHSSNSSSSNSNSGG
GQSDAEKSSSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISA
AGMGCQAAIDCERWLAEEEGGGA*
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mRNA from alignment at Ecto-sp13_S_contig58027:13..384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58027.16253.1 ID=mRNA_Ecto-sp13_S_contig58027.16253.1|Name=mRNA_Ecto-sp13_S_contig58027.16253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58027:13..384+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCGGAGCCGAGCTAGAAGACCCGCGAGGGCAAGACGCGGCGGAACT
CCTGCCGTGCAGCGGGGCGTTCCTAGCCATAGGCCACAAGCCGATGACAA
AGTTTTTACACAGCAGCAACAGCAGCAGCAGCAACAGCAACAGCGGTGGT
GGACAATCAGACGCGGAAAAGAGTAGTAGCGTGGTAGAGCTAGATGAGGA
TGGCTTCGTGGTGCACAAGCAGCACACCATGACCAGCGTCGAAGGCGTGT
TTGCGTGCGGGGACGTGGTGGACCGTCGTTACCGGCAGGCGATAAGCGCC
GCGGGGATGGGGTGCCAGGCGGCGATAGACTGCGAGAGGTGGCTCGCGGA
GGAGGAAGGGGGGGGGGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58027:13..384+

>mRNA_Ecto-sp13_S_contig58027.16253.1 ID=mRNA_Ecto-sp13_S_contig58027.16253.1|Name=mRNA_Ecto-sp13_S_contig58027.16253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58027:13..384+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCGGAGCCGAGCTAGAAGACCCGCGAGGGCAAGACGCGGCGGAACT
CCTGCCGTGCAGCGGGGCGTTCCTAGCCATAGGCCACAAGCCGATGACAA
AGTTTTTACACAGCAGCAACAGCAGCAGCAGCAACAGCAACAGCGGTGGT
GGACAATCAGACGCGGAAAAGAGTAGTAGCGTGGTAGAGCTAGATGAGGA
TGGCTTCGTGGTGCACAAGCAGCACACCATGACCAGCGTCGAAGGCGTGT
TTGCGTGCGGGGACGTGGTGGACCGTCGTTACCGGCAGGCGATAAGCGCC
GCGGGGATGGGGTGCCAGGCGGCGATAGACTGCGAGAGGTGGCTCGCGGA
GGAGGAAGGGGGGGGGGCGTGA
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