mRNA_Ecto-sp13_S_contig58000.16251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58000.16251.1
Unique NamemRNA_Ecto-sp13_S_contig58000.16251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58000.16251.1 vs. uniprot
Match: D8LFI8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 9.510e-31
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = -1 
Query:    1 METRGMRAKEKQHNKSRRAGLRSSPRRARREARNNKPGGCDADLPHHVVLEIMSFLDTRSIVSGRC 198
            METRGMRAKEKQHNKS RAGLRSSPRR  REARNNKPGGCDADLPHHVVLEI+SFLDTRSIVSGRC
Sbjct:    1 METRGMRAKEKQHNKSGRAGLRSSPRRCAREARNNKPGGCDADLPHHVVLEIVSFLDTRSIVSGRC 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58000.16251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFI8_ECTSI9.510e-3193.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58000contigEcto-sp13_S_contig58000:170..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463805.271754-CDS-Ecto-sp13_S_contig58000:169..4931681463805.271754-CDS-Ecto-sp13_S_contig58000:169..493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58000 170..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58000.16251.1prot_Ecto-sp13_S_contig58000.16251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58000 170..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58000.16251.1

>prot_Ecto-sp13_S_contig58000.16251.1 ID=prot_Ecto-sp13_S_contig58000.16251.1|Name=mRNA_Ecto-sp13_S_contig58000.16251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
APATYDGSGVEEGHDFQHDVMWEIGIAAPRLVVSSLSSCAAGGGAKPGPS
GFVVLLFLRAHSTGLHACLLLSYSRGGYRGLIVLWCVQHVGEWRWDGRSG
KDRCCVC*
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mRNA from alignment at Ecto-sp13_S_contig58000:170..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58000.16251.1 ID=mRNA_Ecto-sp13_S_contig58000.16251.1|Name=mRNA_Ecto-sp13_S_contig58000.16251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58000:170..493+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCGGCCACTTACGATGGATCGGGTGTCGAGGAAGGACATGATTTCCA
GCACGACGTGATGTGGGAGATCGGCATCGCAGCCCCCCGGCTTGTTGTTT
CTAGCCTCTCGTCTTGCGCGGCGGGGGGAGGAGCGAAGCCCGGCCCGTCG
GGATTTGTTGTGCTGCTTTTCCTTCGCGCGCATTCCACGGGTCTCCATGC
TTGTCTCCTCCTTTCGTACAGCCGTGGTGGCTATCGTGGACTGATTGTGT
TGTGGTGTGTTCAGCATGTGGGGGAATGGCGATGGGATGGCAGATCAGGC
AAAGATCGGTGCTGTGTTTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58000:170..493+

>mRNA_Ecto-sp13_S_contig58000.16251.1 ID=mRNA_Ecto-sp13_S_contig58000.16251.1|Name=mRNA_Ecto-sp13_S_contig58000.16251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58000:170..493+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCGGCCACTTACGATGGATCGGGTGTCGAGGAAGGACATGATTTCCA
GCACGACGTGATGTGGGAGATCGGCATCGCAGCCCCCCGGCTTGTTGTTT
CTAGCCTCTCGTCTTGCGCGGCGGGGGGAGGAGCGAAGCCCGGCCCGTCG
GGATTTGTTGTGCTGCTTTTCCTTCGCGCGCATTCCACGGGTCTCCATGC
TTGTCTCCTCCTTTCGTACAGCCGTGGTGGCTATCGTGGACTGATTGTGT
TGTGGTGTGTTCAGCATGTGGGGGAATGGCGATGGGATGGCAGATCAGGC
AAAGATCGGTGCTGTGTTTGTTGA
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