mRNA_Ecto-sp13_S_contig5800.16250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5800.16250.1
Unique NamemRNA_Ecto-sp13_S_contig5800.16250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: D8LST4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST4_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.840e-63
Identity = 96/112 (85.71%), Postives = 100/112 (89.29%), Query Frame = 2
Query:    2 RVAHYNDTGFFVRAKGCMVQVGNDPLYLDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKMFRR 337
            RVAHYNDTG F    GC+VQVGN PLYLD LL+GYP RFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEE+CITYPRLFTISPE AD KCTCG PGCR K+FRR
Sbjct:  185 RVAHYNDTGLF----GCIVQVGNGPLYLDALLQGYPTRFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEELCITYPRLFTISPEVADTKCTCGAPGCRQKIFRR 292          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: A0A6H5JU89_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU89_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.580e-51
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = 2
Query:    2 RVAHYNDTGFFVRAKGCMVQVGNDPLYLDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCR 319
            RVAHYNDTGF     GC++QVGNDPLYLD LLKGYP RF+NHSC PNAYL+T  AGKGAAQSKR++V +MKEI AGE++CITYP  FTISP AAD KCTCG PGC+
Sbjct:   45 RVAHYNDTGF----SGCLLQVGNDPLYLDALLKGYPTRFVNHSCGPNAYLHT--AGKGAAQSKRIWVCSMKEIGAGEDLCITYPWPFTISPTAADTKCTCGAPGCQ 144          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: D7G932_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G932_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.700e-27
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 2
Query:    2 RVAHYNDTGFFVRAKGCMVQVGNDPLYLDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKMFRR 337
            R  HY D GF+          G DPLY+D +  GYPARF NHSC+PNAYL T++  KG    K V+  T ++ A GEEVC +YP L + S +  +  C C  P CR KMF+R
Sbjct:  219 RADHYRDVGFYRSIVKVGGDPGEDPLYVDVMRHGYPARFFNHSCEPNAYLQTMVCQKGDLMYKIVWFCTSRDTAEGEEVCFSYPALHSQSSDKEEPDCNCRSPSCRGKMFQR 330          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: A0A183EXE5_9BILA (Histone-lysine N-methyltransferase n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EXE5_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 8.100e-10
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 2
Query:   68 NDPLYLDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKM 328
            +D   +D  + G PAR++NHSCDPN     V +G  +   K++ +   + I+AGEE  +TY   F I   A    C CG P C+  M
Sbjct:   64 DDERLIDATMAGGPARYINHSCDPNCSTRLVDSGP-SGDDKKIIIIANRPISAGEE--LTYDYQFDIEDTADKIPCLCGAPNCQKWM 147          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: A0A7S0AEX1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AEX1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.170e-9
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 2
Query:   83 LDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKM 328
            +D  + G  ARF+NHSC  NAY   +       Q K++ VF  ++I A EE  ITY   F +  E    KCTCG P C  +M
Sbjct:   89 VDATMVGCMARFMNHSCQNNAYAKVITVNTEEGQEKKIVVFANRDIKADEE--ITYDYKFPV--EDGSLKCTCGAPNCIGRM 166          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: A0A183ETL1_9BILA (Histone-lysine N-methyltransferase n=2 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183ETL1_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 1.670e-9
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 2
Query:   68 NDPLYLDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKM 328
            +D   +D  + G PAR++NHSCDPN     V +G  +   K++ +   + I+AGEE  +TY   F I   A    C CG P C+  M
Sbjct:  104 DDERLIDATMAGGPARYINHSCDPNCSTRLVDSGP-SGDDKKIIIIANRPISAGEE--LTYDYQFDIEDTADKIPCLCGAPNCQKWM 187          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: A0A7S4KGM4_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KGM4_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 2.420e-9
Identity = 36/107 (33.64%), Postives = 55/107 (51.40%), Query Frame = 2
Query:    2 RVAHYNDTGFFVRAKGC-MVQVGNDPLYLDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCR 319
            R  HY+  G      GC M ++  D + +D  +KG  ARF+NHSC PNA+   +   K    +K++ +  +K+I  G EV   Y   F I  ++   +C CG P C+
Sbjct:   71 REKHYDSRGI-----GCYMFRLDTDSI-VDATMKGGLARFINHSCSPNAFTRPITIDK---HTKKIVIIALKDIPPGCEVAYDYH--FAIEDDSEKIECLCGAPNCK 166          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: T1G9U2_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G9U2_HELRO)

HSP 1 Score: 64.3 bits (155), Expect = 3.050e-9
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 2
Query:   53 MVQVGNDPLYLDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKM 328
            M ++ N  L +D  + G PAR++NHSC+PN     V   K   +  ++ + T ++IA GEE+C  Y   F +  +     C CG P CR  M
Sbjct:  490 MFRIENTNLVVDATMSGGPARYINHSCNPNCVAEMVPFEK--EKDNKIIIITKRKIAQGEELCYDYK--FDLEDDQHKIPCLCGAPNCRKWM 577          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: A0A7S2A0R2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A0R2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.360e-9
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 2
Query:   83 LDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKM 328
            +D    G  ARF+NHSC PNAY   +         K++ VF  ++I AGEE  ITY   F +  E    +CTCG P C  +M
Sbjct: 1375 VDATTIGCMARFMNHSCQPNAYANVITVNTDQGLDKKIVVFANRDIQAGEE--ITYDYKFPV--EDGSLRCTCGAPNCIGRM 1452          
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Match: A0A0N4V177_ENTVE (Histone-lysine N-methyltransferase n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4V177_ENTVE)

HSP 1 Score: 64.3 bits (155), Expect = 3.360e-9
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 2
Query:   83 LDTLLKGYPARFLNHSCDPNAYLYTVIAGKGAAQSKRVYVFTMKEIAAGEEVCITYPRLFTISPEAADAKCTCGVPGCRLKM 328
            +D  + G PAR++NHSCDPN     V +G   A  K++ +   + I+AGEE  +TY   F +  +     C CG P CR  M
Sbjct: 1392 IDATMAGGPARYINHSCDPNCSTCLVTSGT-TADDKKIIIIANRPISAGEE--LTYDYQFELEDDDVKIPCLCGAPNCRKWM 1470          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5800.16250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST4_ECTSI1.840e-6385.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU89_9PHAE8.580e-5174.53SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G932_ECTSI3.700e-2746.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A183EXE5_9BILA8.100e-1036.78Histone-lysine N-methyltransferase n=1 Tax=Gongylo... [more]
A0A7S0AEX1_9STRA1.170e-940.24Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A183ETL1_9BILA1.670e-936.78Histone-lysine N-methyltransferase n=2 Tax=Gongylo... [more]
A0A7S4KGM4_9EUKA2.420e-933.64Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
T1G9U2_HELRO3.050e-934.78Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
A0A7S2A0R2_9STRA3.360e-940.24Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0N4V177_ENTVE3.360e-937.80Histone-lysine N-methyltransferase n=1 Tax=Enterob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5800contigEcto-sp13_S_contig5800:6639..8339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size436
Hectar predicted targeting categoryother localisation
Exons3
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463805.2116692-CDS-Ecto-sp13_S_contig5800:6638..66841681463805.2116692-CDS-Ecto-sp13_S_contig5800:6638..6684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5800 6639..6684 +
1681463805.2232-CDS-Ecto-sp13_S_contig5800:7274..73851681463805.2232-CDS-Ecto-sp13_S_contig5800:7274..7385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5800 7275..7385 +
1681463805.234853-CDS-Ecto-sp13_S_contig5800:8060..83381681463805.234853-CDS-Ecto-sp13_S_contig5800:8060..8338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5800 8061..8338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5800.16250.1prot_Ecto-sp13_S_contig5800.16250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5800 6639..8338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5800.16250.1

>prot_Ecto-sp13_S_contig5800.16250.1 ID=prot_Ecto-sp13_S_contig5800.16250.1|Name=mRNA_Ecto-sp13_S_contig5800.16250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
ASCALQRHGIFCESEGMHGTGRQRPLVPGHLAEGIPRAVPEPLVRSKRLP
LYGDRRQGGRAIEARICLHDERNRSWRRSLHHVPQAVHHQPRSGRREVHV
RRAGVSPEDVSALGRFRGGREEGGGLSCDVHVGLDHFCLWCRLRG
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mRNA from alignment at Ecto-sp13_S_contig5800:6639..8339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5800.16250.1 ID=mRNA_Ecto-sp13_S_contig5800.16250.1|Name=mRNA_Ecto-sp13_S_contig5800.16250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5800:6639..8339+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGTTGCGCACTACAACGACACGGGATTTTTTGTGAGAGCGAAGGTAG ATAGAAAACAAAGCAACCATTTACAGTTGTATCTCTTAGGCACATGAGTT GTGCATACAAGCGCAAGAGATGGATGTGAAACAACGTGTTTTGCTGACGC GCCGGCGCCTCGTTTGTGAGTTTCGTGACGACACCTGTCGTCTCTATCTT GTAGATACTTCTGCACGCCCAACACTTTCGCACCCATGTTGTATTTTTTC TGACACTGATGCGTGCTACACACTACCTCAGCCGACACTTCGAAAGCAAA CCTCGTCCTTTCTTTGACGGCATGTGTATAGGAAGCAGAGGAACGTGGCA TCCCCCGTTTTCATATAATTTCAAGTCCAAGCTGGGTCGAAGTAGAGGGT TTCTTGCCCCCCTGCTTTGTTTTTGCTGTCGACAACATGCTGCGTTGGCA ACAGCAGCAACCATACCCAGCAAAAACCTGGACACAGCGTGGGTGGATGG TATGGTAGTGTTGTGTCAAACCAGTTCGTTTGGGGTACGCCAATTGGTCA GGCAGCCCCCCACCCCTTCTCTCCGCTCCCGCCAACACCCCCTTTCTTTC CCTTTCCTAGACTCCCTCAACCTCATCGCTGCGCAGGGATGCATGGTACA GGTCGGCAACGACCCCTTGTACCTGGACACCTTGCTGAAGGGATACCCCG CGCGGTTCCTGAACCACTCGTGCGATCCAAACGCTTACCTTTATACGGTG AGCAGTGTACAATGTTCTTAACTCCACCACATTTATCAGTCAATAGGATG GGATGGATGGTATATGGCTGAGAGAGCATTATGTGAACGTGGATCAACTC TGATATCTGTTCAGGAAGGTGCGAAGCACGCCCAGGAAGATTGGGTGTTT AACTTTCATTTGCGAATCGAAAGAAAAAAGGCAAAAGGGGGAGGGGGCTC GTTCATGGCCCGTCCAGAGCACCCATAATCACGGCGGTTATGTCCTCGGT TCAACTATGTTTTTGGAGTGAAACCGTTGGTCGGGTTTTCTGTTTTGTGC CCGAGAGCGTTACTGTCTATCGCCCAAACTTTGCCCCGTGTAAAGCCATG TTTCACATGGGCACTTCTGTTCTTTTCCATTTCCGCTTCCCACATGGGCC AGTCCACACACACCGTTGATTCCACCCACCAAGAAGTTTTTGCGCACGGC ACAGTTCCGGGGGTGACATCAGCGTTTTTCCTGGAGCAACTGACTGCTCC TTGGTTAGCGCGGAGGATGCAAGAAACGAGCGCTACCACTCGAATCCCGT TCTTATAGACAAGGCGCGACCTGTTAACATGCCCCCCTCGCACCACGCCT CCTCCGTATTGTCGTACCCCATCATCTAGACTATATCTGAACGCTTTCCG TCGCACGTTTTGGTTCACACAGGTGATCGCAGGCAAGGGGGCCGCGCAAT CGAAGCGCGTATATGTCTTCACGATGAAAGAAATCGCAGCTGGCGAAGAA GTCTGCATCACGTACCCCAGGCTGTTCACCATCAGCCCCGAAGCGGCAGA CGCGAAGTGCACGTGCGGCGTGCCGGGGTGTCGCCTGAAGATGTTTCGGC GCTAGGACGTTTCAGGGGAGGGAGAGAGGAGGGGGGAGGCCTCTCGTGTG ATGTGCATGTAGGTTTGGACCATTTTTGCTTGTGGTGCAGATTGCGTGGA T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5800:6639..8339+

>mRNA_Ecto-sp13_S_contig5800.16250.1 ID=mRNA_Ecto-sp13_S_contig5800.16250.1|Name=mRNA_Ecto-sp13_S_contig5800.16250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5800:6639..8339+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGTTGCGCACTACAACGACACGGGATTTTTTGTGAGAGCGAAGGGAT
GCATGGTACAGGTCGGCAACGACCCCTTGTACCTGGACACCTTGCTGAAG
GGATACCCCGCGCGGTTCCTGAACCACTCGTGCGATCCAAACGCTTACCT
TTATACGGTGATCGCAGGCAAGGGGGCCGCGCAATCGAAGCGCGTATATG
TCTTCACGATGAAAGAAATCGCAGCTGGCGAAGAAGTCTGCATCACGTAC
CCCAGGCTGTTCACCATCAGCCCCGAAGCGGCAGACGCGAAGTGCACGTG
CGGCGTGCCGGGGTGTCGCCTGAAGATGTTTCGGCGCTAGGACGTTTCAG
GGGAGGGAGAGAGGAGGGGGGAGGCCTCTCGTGTGATGTGCATGTAGGTT
TGGACCATTTTTGCTTGTGGTGCAGATTGCGTGGA
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