mRNA_Ecto-sp13_S_contig58.16246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58.16246.1
Unique NamemRNA_Ecto-sp13_S_contig58.16246.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58.16246.1 vs. uniprot
Match: D7G4Q6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q6_ECTSI)

HSP 1 Score: 562 bits (1448), Expect = 8.820e-195
Identity = 378/408 (92.65%), Postives = 386/408 (94.61%), Query Frame = 1 
Query:   88 STRERSEYGGLEDGVGGKENETPSPAADRVRTSTTEGAQPTGQGHKQQRHTPENSP-VGAATKEAAATWPPXXPIPLILHLFLENHRPRDLSALPAGGSRGSNAGDGSSSVYRVWFTGGLAYEGQLLCREGGEKRVPHGWGNLTFPDRGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGGHTRSYDGDWENDLPHGHGVFVDTEEGEHFCGAWRHGIRSGGGTLVQGRPGKEKRQKGGEDTGDETERGDKASSELAWYSGNFEHGLPHGDGTMKYCGATFCXXXXXXXXXXXXRIDFGEKSGFSSGVFEGSWIDGIPCGSGRWWYKQSGVASDCTFEQGYSRKIWST 1308
            STRERSE GGL DGVGGKENETPSPA DRVRTSTTE AQP GQGHKQQRHT ENS  VGAATKE AATWPP  PIPLILHLFLENHRPRD+SALP+GGSRGSNAGDGSSSV+RVWFTGGLAYEGQLL REGGEKRVPHGWGNLTFPD+GFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARG HTRSYDGDWENDLPHGHGVFVDT EGE FCGAWRHGIRSG GTLVQGR  KEKRQKGGEDTG+E ER D+ASSELAWYSGNFEHGLPHGDGTM YCGATFCXXXXXXXXXXXX+IDFGEKSGFSSGVFEGSWIDG+PCGSGRWWYKQSGVA DCTFEQGYSRKIWST
Sbjct:    3 STRERSESGGLGDGVGGKENETPSPATDRVRTSTTEDAQPAGQGHKQQRHTRENSTAVGAATKEGAATWPPPPPIPLILHLFLENHRPRDVSALPSGGSRGSNAGDGSSSVHRVWFTGGLAYEGQLLRREGGEKRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSHTRSYDGDWENDLPHGHGVFVDTAEGERFCGAWRHGIRSGAGTLVQGRLEKEKRQKGGEDTGEEAEREDEASSELAWYSGNFEHGLPHGDGTMTYCGATFCXXXXXXXXXXXXKIDFGEKSGFSSGVFEGSWIDGVPCGSGRWWYKQSGVALDCTFEQGYSRKIWST 410
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58.16246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q6_ECTSI8.820e-19592.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58contigEcto-sp13_S_contig58:33354..37223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score572.4
Seed ortholog evalue1.7e-160
Seed eggNOG ortholog2880.D7G4Q6
Model size1865
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-20_000760.1
Cds size1233
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463804.5136437-UTR-Ecto-sp13_S_contig58:33353..334311681463804.5136437-UTR-Ecto-sp13_S_contig58:33353..33431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58 33354..33431 +
1681463804.563648-UTR-Ecto-sp13_S_contig58:36669..372231681463804.563648-UTR-Ecto-sp13_S_contig58:36669..37223Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58 36670..37223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463804.5272975-CDS-Ecto-sp13_S_contig58:33431..335461681463804.5272975-CDS-Ecto-sp13_S_contig58:33431..33546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 33432..33546 +
1681463804.5396383-CDS-Ecto-sp13_S_contig58:35025..356731681463804.5396383-CDS-Ecto-sp13_S_contig58:35025..35673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 35026..35673 +
1681463804.5529315-CDS-Ecto-sp13_S_contig58:36199..366691681463804.5529315-CDS-Ecto-sp13_S_contig58:36199..36669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 36200..36669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58.16246.1prot_Ecto-sp13_S_contig58.16246.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58 33432..36669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58.16246.1

>prot_Ecto-sp13_S_contig58.16246.1 ID=prot_Ecto-sp13_S_contig58.16246.1|Name=mRNA_Ecto-sp13_S_contig58.16246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
MTKSTRERSEYGGLEDGVGGKENETPSPAADRVRTSTTEGAQPTGQGHKQ
QRHTPENSPVGAATKEAAATWPPPPPIPLILHLFLENHRPRDLSALPAGG
SRGSNAGDGSSSVYRVWFTGGLAYEGQLLCREGGEKRVPHGWGNLTFPDR
GFYQGCWHGGVVHGKGALHLPNGNSYLGSWAYGRKHGLGSFTWADGSRHE
GYYLAGERNGVGTMHYASGAVYEGNFKAGRRHGVGRLELARGGHTRSYDG
DWENDLPHGHGVFVDTEEGEHFCGAWRHGIRSGGGTLVQGRPGKEKRQKG
GEDTGDETERGDKASSELAWYSGNFEHGLPHGDGTMKYCGATFCGHVEQG
VPHGGGRIDFGEKSGFSSGVFEGSWIDGIPCGSGRWWYKQSGVASDCTFE
QGYSRKIWST*
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mRNA from alignment at Ecto-sp13_S_contig58:33354..37223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58.16246.1 ID=mRNA_Ecto-sp13_S_contig58.16246.1|Name=mRNA_Ecto-sp13_S_contig58.16246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:33354..37223+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGGCCGTTCGCCCAACAAAGGACCACGGAGGAAGGGGTTGGATCATGA
CCGGGCACGAGAGGTCACGTCCTGTTCGATGACTAAAAGCACGAGGGAGC
GGTCTGAATATGGAGGTCTCGAAGACGGGGTTGGAGGGAAGGAGAATGAG
ACCCCAAGCCCAGCAGCCGATCGTGTCCGAACATCAACGACAGGTTTGTT
TGGGGGCAGCCACAGAAGAACGAGTTCCCTGATGATTTGCAAGTTCAGGT
CCACCGTGTTTTATGCGTAAGATGTGTGCCTGATGCTGTTGGCCAGCTCT
GTTGGATTGTATGCATAGGAGAAAACGTGGACATTCACAAAAAAACATCG
TCGAGTTGAACATGGCTGGTCGATATACAGCATAGTCTCCGAAAGCTTAT
CTACCGTCAACCACACACGAGCCATAAATCTTTGGGGAAATTGATTACAC
TACACATACAGTGGTTATTAATCCGTGTTTGCCGCACAGAGGAGGAGCGG
TTCCACTACTTAGTCTACTGTACAACCTCCACCCACATTCTCAAACCTAA
ACAATCTGTCCATATAACAGCAAATAAAAGTCAAACAAAAACTGCCGATA
CGGCGGGGGTGCTCAGGTATTTGCATTATGGACAGCGTGGAGCAGGAATG
TGCGTGCTGGAACGTTGAAATGTGCCGTTGTTCGGACTCTGTGATTTCAT
ATCGAAGGCAGCGGCTGAGTGAGGTCAGAAAAAACGAAAAACCCGCACAC
ATATCCGCATCCCGAACATTCACCTGCTACTTCTACATGTATGCATGTGT
ATGTATTCACCATCACAGACCCGATTTCCTTTAGGTTCTATAGCAGTACA
AGTAGCTCATACCTAGCCGCCTTGGACGACTCGCAGTTCAGGAGATTGAG
GCTCGTGGCGGCAAGTACAGCAGTGACGAATGTTTGGTTTGGATCCAGAT
TCGTTTACGAAATGGTTCGCGGCTGCCTTCGGTATCACAGGCGCCCCAGC
AGCAGATCTGAGGGTGGGTGCCAACGGGCACGTCGCCTCGAAAGCACACC
TACCTCACTGATAAGGAAGTACTTCATGGAAGGCATCCTACGCCAGAAGG
TCGTTTTTCGACTTTTCGGCCTTGATCGCCCTGGGTTTAGACTGGTACCG
ATTCTTGTCCCCGACACCTAAGGGCGGAGTGACAGACGCACACGAAACAA
GTGCGTTCACCACGCTCCCCTTGTTTGTATCGACACATTCGATAAGCATG
TTGTCACGTATGTATGTACCCCGCTATTAATAGTTGCTTTGTTGCAGAAG
ACAAGTTTGTCTCTGCTACCACGTGGAACCTTAAGCGTGTGGACTCGTCC
TGGTTTTCTACCGGTTGAAGGGGGCACGGTCATGATGCCTAACGCCTGGA
CAAGAGACCGTTGGTCTTCACGGCCAAGCTGTGCGGTAGTTGTGCAAAGT
TTGCTGGTCCTAAGCATGTAGACCCACGTTGTACAAGTCGTGTCGCGCGC
AATCGCTCTTGTGCATTTTCGATTCCGCTGGAGTTCGGATGCCCCGACGG
CCTGTCATTAACACCGTATCGTAAACACTCGTGCCCACCGTCGTGTCTAC
CAGCTCAGACTGGTGCCCCAGTAATCGTTCAGTTTTTTCGTACCCAACGG
CGCTGTTCTTCCCGACGAACAGAAGGTGCTCAGCCCACAGGTCAAGGACA
CAAGCAGCAGCGGCACACACCGGAGAACAGCCCCGTGGGCGCCGCCACGA
AAGAGGCAGCGGCCACCTGGCCTCCGCCCCCGCCTATTCCGCTAATCCTG
CACCTCTTTCTCGAGAACCACCGCCCTCGAGACTTGTCGGCACTGCCTGC
AGGCGGGAGCCGTGGCAGCAATGCCGGCGACGGTTCATCGTCAGTGTATC
GTGTGTGGTTTACGGGTGGCTTGGCCTACGAGGGTCAGCTCCTCTGCCGT
GAGGGAGGCGAGAAGCGCGTGCCGCATGGCTGGGGCAACCTCACGTTCCC
GGACAGGGGTTTCTACCAGGGGTGCTGGCACGGAGGCGTGGTGCACGGAA
AGGGGGCACTGCACCTTCCCAACGGCAACTCTTACCTCGGGTCGTGGGCG
TATGGGCGAAAGCACGGCCTTGGATCCTTCACTTGGGCGGACGGGTCAAG
GCACGAGGGCTATTACTTGGCGGGCGAGAGAAACGGCGTGGGCACAATGC
ACTACGCTTCGGGGGCCGTTTACGAGGGAAACTTCAAGGCCGGTCGTCGA
CACGGTGTGGGTCGGCTCGAGCTTGCTAGAGGGGGTCATACTAGGTCCTA
CGACGGGGATTGGGAAAACGGTATGTAAGACTGTTTGCAGATTTGGGTAC
ATGTATTCATATTTTTGGTATGGTGAGGTTCGCTGTGCTGTTTGCGTCGA
AGCACATAGCCTAAAGCTTGGTGAGCTGTTGAACTACATGCAGGGAAGGT
CACCACCGACAGCGGGGCAGCCAGTTGTGGGGTGGTCCTGCTGCCTACTA
TTGCTTTCATCTTGCATCGACCCCGTGATGATACTGTCGTGCTCTCATGA
GCCCACTCCGGGGATCCCTAGTTATGTATGTACACTTTCGGTTGATCCAA
TGCTCATCTCTGTCCTCGGATTGTGAGAAGAACCACAATGAACGGTTTAA
CAATGGCGTGAGACACTCGTCACTCTGACCGTCGACTTATCACCAAACAC
AAAAATCTTCTGGTATAAACTTGTCACAATAATTCTCCCGTGTACTGTCA
TATTGCTTATTGCGTCTGAGTTCACATCATTGCTATTTTATCGCACCTTC
GGTTGACTTTTTTGCCCTCGCACTGTTCAAAATACTTCACCTGTAGATTT
GCCGCACGGCCACGGCGTGTTCGTCGACACCGAGGAAGGCGAGCACTTCT
GCGGCGCTTGGCGACATGGAATCAGGTCGGGGGGGGGCACGCTGGTGCAG
GGGCGGCCGGGAAAAGAAAAACGTCAGAAGGGCGGGGAAGACACGGGCGA
TGAAACGGAACGGGGAGACAAAGCGTCGTCCGAACTCGCCTGGTACTCGG
GCAACTTCGAGCACGGTTTACCCCACGGCGACGGAACGATGAAGTATTGC
GGGGCTACGTTTTGCGGCCACGTGGAGCAGGGAGTTCCCCACGGGGGCGG
AAGGATTGATTTCGGGGAGAAGAGCGGCTTCTCCTCTGGAGTTTTTGAGG
GGTCATGGATCGACGGGATTCCATGTGGCAGTGGTAGGTGGTGGTACAAG
CAGAGCGGGGTCGCGTCGGACTGTACCTTCGAACAGGGTTACTCGCGGAA
AATCTGGTCCACTTGAATGTTTTCTTGAAAGCGGTCTACTATAGTCGAGG
TGAAGTTTCGTCATGTTGATAGCATTCGACTCGGATGGGCTTCTTTGCCC
TGCCGATAAGTATTCGTTTCTAAGGGGGCTGGTGTAGTTCTGAGTGTACA
TGTTTTGCTGTCGAGGTATTATTTGGTGGGCTTTGACGTATTGTCCAGAA
AGCCTGAAAGTATTTGGCATGGCATCTTAAACCTTTTTGGCCTCGCTGGC
GTCGAAAAACACCTCGACAGCAAGCCAGCAGGCCAGCACCAGCATGAACG
TCGATGTGCCAACAGACTTACAGTAGTGATTGACCATGGACTAATTGCAA
TTGCATCGACGTGCGGCGGGGGTGATCGACTTCCCAGCCGTATATGTACC
AATTTCAGTGCACCGCTGGGGAGCTTCCTTGCAGACTGCACCAAGGAAGG
TCGTTCGTGTGAAGGTGTCCACATGATTGCATTATTTTGGTGGAGACGGG
CCCTCAGACGTCGTGTCGTGTAGGATGTCGCACAAGGATGTAGGCTTTTG
TTTGTCGACCGACCGGAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58:33354..37223+

>mRNA_Ecto-sp13_S_contig58.16246.1 ID=mRNA_Ecto-sp13_S_contig58.16246.1|Name=mRNA_Ecto-sp13_S_contig58.16246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:33354..37223+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTAAAAGCACGAGGGAGCGGTCTGAATATGGAGGTCTCGAAGACGG
GGTTGGAGGGAAGGAGAATGAGACCCCAAGCCCAGCAGCCGATCGTGTCC
GAACATCAACGACAGAAGGTGCTCAGCCCACAGGTCAAGGACACAAGCAG
CAGCGGCACACACCGGAGAACAGCCCCGTGGGCGCCGCCACGAAAGAGGC
AGCGGCCACCTGGCCTCCGCCCCCGCCTATTCCGCTAATCCTGCACCTCT
TTCTCGAGAACCACCGCCCTCGAGACTTGTCGGCACTGCCTGCAGGCGGG
AGCCGTGGCAGCAATGCCGGCGACGGTTCATCGTCAGTGTATCGTGTGTG
GTTTACGGGTGGCTTGGCCTACGAGGGTCAGCTCCTCTGCCGTGAGGGAG
GCGAGAAGCGCGTGCCGCATGGCTGGGGCAACCTCACGTTCCCGGACAGG
GGTTTCTACCAGGGGTGCTGGCACGGAGGCGTGGTGCACGGAAAGGGGGC
ACTGCACCTTCCCAACGGCAACTCTTACCTCGGGTCGTGGGCGTATGGGC
GAAAGCACGGCCTTGGATCCTTCACTTGGGCGGACGGGTCAAGGCACGAG
GGCTATTACTTGGCGGGCGAGAGAAACGGCGTGGGCACAATGCACTACGC
TTCGGGGGCCGTTTACGAGGGAAACTTCAAGGCCGGTCGTCGACACGGTG
TGGGTCGGCTCGAGCTTGCTAGAGGGGGTCATACTAGGTCCTACGACGGG
GATTGGGAAAACGATTTGCCGCACGGCCACGGCGTGTTCGTCGACACCGA
GGAAGGCGAGCACTTCTGCGGCGCTTGGCGACATGGAATCAGGTCGGGGG
GGGGCACGCTGGTGCAGGGGCGGCCGGGAAAAGAAAAACGTCAGAAGGGC
GGGGAAGACACGGGCGATGAAACGGAACGGGGAGACAAAGCGTCGTCCGA
ACTCGCCTGGTACTCGGGCAACTTCGAGCACGGTTTACCCCACGGCGACG
GAACGATGAAGTATTGCGGGGCTACGTTTTGCGGCCACGTGGAGCAGGGA
GTTCCCCACGGGGGCGGAAGGATTGATTTCGGGGAGAAGAGCGGCTTCTC
CTCTGGAGTTTTTGAGGGGTCATGGATCGACGGGATTCCATGTGGCAGTG
GTAGGTGGTGGTACAAGCAGAGCGGGGTCGCGTCGGACTGTACCTTCGAA
CAGGGTTACTCGCGGAAAATCTGGTCCACTTGA
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