mRNA_Ecto-sp13_S_contig58.16245.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58.16245.1
Unique NamemRNA_Ecto-sp13_S_contig58.16245.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58.16245.1 vs. uniprot
Match: D7G4Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q5_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 8.960e-29
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 MTAIANALGLGNLPVGIQYAVIGLVVAHVLAFSYWLLRITTDKKRLEMRFKEE 159
            MTAIANALGLGNLPVGIQYAVIGLVVAHVLAFSYWLLRITTDKKRLEMRFKEE
Sbjct:    1 MTAIANALGLGNLPVGIQYAVIGLVVAHVLAFSYWLLRITTDKKRLEMRFKEE 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58.16245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q5_ECTSI8.960e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58contigEcto-sp13_S_contig58:32038..32751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size162
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000770.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463804.4689095-CDS-Ecto-sp13_S_contig58:32037..321271681463804.4689095-CDS-Ecto-sp13_S_contig58:32037..32127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 32038..32127 -
1681463804.4790068-CDS-Ecto-sp13_S_contig58:32679..327511681463804.4790068-CDS-Ecto-sp13_S_contig58:32679..32751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 32680..32751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58.16245.1prot_Ecto-sp13_S_contig58.16245.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58 32038..32751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58.16245.1

>prot_Ecto-sp13_S_contig58.16245.1 ID=prot_Ecto-sp13_S_contig58.16245.1|Name=mRNA_Ecto-sp13_S_contig58.16245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MTAIANALGLGNLPVGIQYAVIGLVVAHVLAFSYWLLRITTDKKRLEMRF
KEE*
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mRNA from alignment at Ecto-sp13_S_contig58:32038..32751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58.16245.1 ID=mRNA_Ecto-sp13_S_contig58.16245.1|Name=mRNA_Ecto-sp13_S_contig58.16245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:32038..32751- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGCCATCGCTAATGCATTGGGCCTGGGCAATCTACCGGTTGGCAT
CCAGTATGCCGTGATCGGATTGGTGAGCTCGGCATAGGAGTGGAGGTGTT
TATTTGTACCAACCTGTGGTCGATGAATTTCAACTTTTGTTCACAACAGC
AGCAGTGCAGCAAGCAGTGGCTCTGCAGTGGTGGACTTATTTGATGTAGG
GAGAGTCACGATGATTCTTGGTTGGTTCAGCACCCTGTGTTTTCTGCCAT
ATGGTACCGTTCATCTCCTCTGTGGAGTACCGCGGTCGGTAGCTCGATAC
AGCGGTGATACTTCGATACTACTGCTGAGGGGGACTGCCGATCGGACTAC
GGGAGAGGTTCCAAACTCGCTTGATACCGCTGCAACGCAACAACTCTACT
TGTACGTGCAGCAGTGTCTAAACGGTATGAAGTCCGCCACAGCTCGCAAT
AGCGATTGCGTGTTTCAAGAGTAGTCTAATCAAGGTGCGGGTAGGTTTCG
CGCCCTATCTAACCCCAGCCAGTCAGACGCCTCTGTTCATACTTGCAGCT
TCCAGTAGAAGCTTGTTCCTTTTCCGCCGCGTGACCTTTTTTCATTTCTG
CCTCATCACTTGTCTACGAACAAGGTGGTCGCTCATGTGCTGGCTTTCTC
GTACTGGCTTCTACGAATCACGACCGACAAGAAGCGACTCGAGATGCGCT
TCAAGGAGGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58:32038..32751-

>mRNA_Ecto-sp13_S_contig58.16245.1 ID=mRNA_Ecto-sp13_S_contig58.16245.1|Name=mRNA_Ecto-sp13_S_contig58.16245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:32038..32751- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGCCATCGCTAATGCATTGGGCCTGGGCAATCTACCGGTTGGCAT
CCAGTATGCCGTGATCGGATTGGTGGTCGCTCATGTGCTGGCTTTCTCGT
ACTGGCTTCTACGAATCACGACCGACAAGAAGCGACTCGAGATGCGCTTC
AAGGAGGAGTAA
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