mRNA_Ecto-sp13_S_contig58.16244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58.16244.1
Unique NamemRNA_Ecto-sp13_S_contig58.16244.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58.16244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58contigEcto-sp13_S_contig58:31266..32030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size765
Hectar predicted targeting categorysignal peptide
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463803.3055189-CDS-Ecto-sp13_S_contig58:31265..316671681463803.3055189-CDS-Ecto-sp13_S_contig58:31265..31667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 31266..31667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463803.3172317-UTR-Ecto-sp13_S_contig58:31667..320301681463803.3172317-UTR-Ecto-sp13_S_contig58:31667..32030Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58 31668..32030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58.16244.1prot_Ecto-sp13_S_contig58.16244.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58 31266..31667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58.16244.1

>prot_Ecto-sp13_S_contig58.16244.1 ID=prot_Ecto-sp13_S_contig58.16244.1|Name=mRNA_Ecto-sp13_S_contig58.16244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
FFSAKTIEHFLLLCTPGAFTQSISGYSTTPDWASVHRRQSAFLRSIMFDP
APPADSSIRHKNHTERSCNIYAYRVVNKRVCRVLQGPRGGQDKYSCQHQR
LVGQASCWNSSSTSMLIKSRATQCLPCAQKNRA*
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mRNA from alignment at Ecto-sp13_S_contig58:31266..32030+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58.16244.1 ID=mRNA_Ecto-sp13_S_contig58.16244.1|Name=mRNA_Ecto-sp13_S_contig58.16244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:31266..32030+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTTTCAGCCAAAACTATAGAACACTTTCTCCTTTTGTGCACCCCCGG
GGCGTTCACCCAGAGTATATCGGGATACAGCACTACACCCGATTGGGCAT
CCGTTCATCGGCGCCAAAGTGCTTTCTTGCGCTCAATCATGTTTGATCCA
GCCCCACCCGCAGATTCTAGTATACGGCACAAGAACCACACGGAGAGGAG
CTGCAATATCTACGCCTACAGGGTTGTTAATAAACGGGTTTGCCGGGTGC
TTCAAGGACCTAGGGGTGGGCAGGATAAATACTCTTGCCAGCACCAACGT
CTTGTGGGTCAAGCAAGCTGTTGGAATTCATCCTCGACCTCCATGCTGAT
CAAATCTAGGGCAACGCAATGCTTGCCATGTGCGCAAAAAAACAGGGCTT
GACGAACCAAAGAGGCATCGCGCCGCTGTGACAAACATCGCCATAATGCT
CCATGTGAAGGAAGCAAAGCAAGGGTACCTACCGCACCTCGGTGACCTCG
TGTGTTTGGCCAGTATTCAACGACCAAAAACACTCCCAAACATGCCCGCG
GGCAAGCTACCGACGTACCCTATCGGTTTCGTTTCGCCAAGAGAAACTTG
CACATTACTACTAACCTTAATCGATCAAAAGTTCAATCCTACAATTACAA
GATTACAAGAGGAGCACCGTACAGCAGCAGCCGCCCGCACGTTGCCGTTT
TTGGTGCACAAGCAACAGAAGCCGAACCCAGTAAGTCTCCGACACGCTCC
TCGCTCCTAGCTTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58:31266..32030+

>mRNA_Ecto-sp13_S_contig58.16244.1 ID=mRNA_Ecto-sp13_S_contig58.16244.1|Name=mRNA_Ecto-sp13_S_contig58.16244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:31266..32030+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTTTTCAGCCAAAACTATAGAACACTTTCTCCTTTTGTGCACCCCCGG
GGCGTTCACCCAGAGTATATCGGGATACAGCACTACACCCGATTGGGCAT
CCGTTCATCGGCGCCAAAGTGCTTTCTTGCGCTCAATCATGTTTGATCCA
GCCCCACCCGCAGATTCTAGTATACGGCACAAGAACCACACGGAGAGGAG
CTGCAATATCTACGCCTACAGGGTTGTTAATAAACGGGTTTGCCGGGTGC
TTCAAGGACCTAGGGGTGGGCAGGATAAATACTCTTGCCAGCACCAACGT
CTTGTGGGTCAAGCAAGCTGTTGGAATTCATCCTCGACCTCCATGCTGAT
CAAATCTAGGGCAACGCAATGCTTGCCATGTGCGCAAAAAAACAGGGCTT
GA
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