mRNA_Ecto-sp13_S_contig58.16240.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58.16240.1
Unique NamemRNA_Ecto-sp13_S_contig58.16240.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: A0A6H5JZ36_9PHAE (PCI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ36_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 1.950e-108
Identity = 162/164 (98.78%), Postives = 164/164 (100.00%), Query Frame = 1
Query:    1 ELYACGLQGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEKAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKESSVDASGLDADAPNSLL 492
            ELYACGL+GSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGE+APAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKESSVDASGLDADAPNSLL
Sbjct:  272 ELYACGLEGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEQAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKESSVDASGLDADAPNSLL 435          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: D7G4Q3_ECTSI (PCI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q3_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 2.300e-104
Identity = 162/164 (98.78%), Postives = 164/164 (100.00%), Query Frame = 1
Query:    1 ELYACGLQGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEKAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKESSVDASGLDADAPNSLL 492
            ELYACGL+GSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGE+APAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKESSVDASGLDADAPNSLL
Sbjct:  624 ELYACGLEGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEQAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKESSVDASGLDADAPNSLL 787          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: A0A7S3YM12_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM12_HETAK)

HSP 1 Score: 134 bits (337), Expect = 8.790e-36
Identity = 73/155 (47.10%), Postives = 103/155 (66.45%), Query Frame = 1
Query:    1 ELYACGLQGSQEEFTAYRVLYYLYLQTSCSG--GSTGLQKILQEL-PAGEKAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPN-GAEVACKESSVD 453
            ELYA G  G + EFTAYRVLYY+ +Q +     GST + K+L+ L PA    PA+ HALRVR+A+A  DYHLFF LY+  PN+  +IM  +L  +RV+AL+R++KAY+PTI+  F+   L FD++++    L   GV F  + G+ + CK S+VD
Sbjct:  103 ELYASGAPGHEMEFTAYRVLYYVNMQDNQKNQDGSTEMLKMLKALRPAQRADPAVAHALRVRQAMAEDDYHLFFQLYEDAPNMSAYIMDLMLDKIRVKALQRVVKAYKPTIATDFIQRILAFDSEDECFELLTVVGVKFAKSDGSLIDCKTSTVD 257          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: A0A812VZU3_SYMMI (Leng8 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VZU3_SYMMI)

HSP 1 Score: 121 bits (303), Expect = 1.310e-30
Identity = 63/132 (47.73%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    1 ELYACGLQGSQEEFTAYRVLYYLYLQTS--CSGGSTGLQKILQELP-AGEKAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFL 387
            ++Y  GL GS+ EFTAYR+LYYLYLQ +     GS  L  ++  LP A  + PA+ HAL +R+++ + +YH FF LY+ TPNLG  I+  +L + RV+AL+RII+AY+P I++ FV  EL FD+ E+ V F+
Sbjct:  151 QMYTSGLPGSEMEFTAYRILYYLYLQGNKKYQQGSQDLAHLMAALPQAAFEHPAVKHALAMRESMLLENYHRFFRLYRDTPNLGNCILDMMLDSWRVKALQRIIRAYKPVIAVEFVAQELSFDSIEECVEFV 282          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: A0A7S3GSG7_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GSG7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.170e-29
Identity = 63/161 (39.13%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    4 LYACGLQGSQEEFTAYRVLYYLYL--QTSCSGGSTGLQKILQEL-PAGEKAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVAC----KESSVDASGL 465
            LYA GL+G++ EFTAYR+LYY+YL      +GGS  L  ++  L P   K  A++HAL+VR+A+ + +YH FF LY+ TPN+G +I+  +L   R +AL+++ + Y+P ++ SFV+  L F+ +  GV F++  G +   + A        K+S+VD + L
Sbjct:  485 LYAAGLKGAEMEFTAYRILYYVYLLGNKKYTGGSKDLAHLMSSLSPEAFKDEAVSHALQVRQALQLDNYHRFFKLYRDTPNMGAYILDLMLDNWRAQALQKMNRGYKPEVTASFVVSTLAFEDERLGVEFMRKVGCVLAVDKATGVLMWNTKDSNVDPTAL 645          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: UPI0009E47D76 (leukocyte receptor cluster member 8 homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E47D76)

HSP 1 Score: 119 bits (299), Expect = 1.670e-28
Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    4 LYACGLQGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEKA-PAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKES 444
            LYA  L G+  EFTAYR+LYY+  + +       L   L  L   EK  PAI HAL +R A A+++YH FF LY + PN+  +++   ++  RV+AL+ ++K+YRP++++SFV  EL F  DE  + FLQ  GV+FT +G+++ CK+S
Sbjct:  398 LYAENLPGNILEFTAYRLLYYILTKNTLD-----LTTALARLTKDEKENPAIRHALLIRSAWALSNYHTFFQLYLSAPNMSGYLLDLFVQRERVQALKTMVKSYRPSVAVSFVESELGFTEDEQCLKFLQDLGVVFTADGSKIDCKQS 540          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: A0A7S1Z7R6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z7R6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.580e-27
Identity = 66/152 (43.42%), Postives = 97/152 (63.82%), Query Frame = 1
Query:   37 EFTAYRVLYYLYLQTS--CSGGSTGLQKILQELPAGEKA-PAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTD-----EDGVAFLQACGVIFTPNGAEVACKESSVDASGLD 468
            EF AYR++YY++L  +    GGS+ L KI+  L   ++  P+I HAL+VR AVA  DYH FF L  + PN+G ++M  L+ T+R  AL+R+ +AYRP++ + F+L EL FD D     E G  FLQ+CG   + +G+E+  KES +  S L+
Sbjct:  761 EFVAYRIIYYVFLMGNKKYDGGSSDLFKIMLGLTQEQRENPSIAHALKVRVAVAEYDYHSFFRLQDSCPNMGAYLMDYLVPTVRQAALQRVCRAYRPSVEMLFLLPELGFDADLPEELELGKEFLQSCGCKLSEDGSEILTKESVLRESNLN 912          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: A0A7S3GSQ0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GSQ0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.720e-27
Identity = 58/152 (38.16%), Postives = 93/152 (61.18%), Query Frame = 1
Query:   31 QEEFTAYRVLYYLYL--QTSCSGGSTGLQKILQEL-PAGEKAPAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVAC----KESSVDASGL 465
            Q EFTAYR+LYY+YL      +GGS  L  ++  L P   K  A++HAL+VR+A+ + +YH FF LY+ TPN+G +I+  +L   R +AL+++ + Y+P ++ SFV+  L F+ +  GV F++  G +   + A        K+S+VD + L
Sbjct:    3 QGEFTAYRILYYVYLLGNKKYTGGSKDLAHLMSSLSPEAFKDEAVSHALQVRQALQLDNYHRFFKLYRDTPNMGAYILDLMLDNWRAQALQKMNRGYKPEVTASFVVSTLAFEDERLGVEFMRKVGCVLAVDKATGVLMWNTKDSNVDPTAL 154          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: UPI00077AED6F (leukocyte receptor cluster member 8 homolog n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AED6F)

HSP 1 Score: 116 bits (290), Expect = 3.080e-27
Identity = 62/148 (41.89%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    4 LYACGLQGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEKA-PAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKES 444
            LYA  L G+  EFTAYR+LYY+  + +       L   L  L   EK+ PAI HAL +R A A+++YH FF LY + PN+  +++   ++  RV+AL+ ++K+YRP+I++SFV  EL F  DE  + FLQ  GV+ T +G ++ CK++
Sbjct:  405 LYAENLPGNISEFTAYRLLYYILTKNTLD-----LTTALARLTKEEKSDPAIKHALLIRSAWALSNYHTFFQLYLSAPNMSGYLLDLFVQRERVQALKAMVKSYRPSIAVSFVECELGFTEDEQCLKFLQDLGVVLTADGIKIDCKQT 547          
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Match: A0A3M6TEY4_POCDA (PCI domain-containing protein n=4 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TEY4_POCDA)

HSP 1 Score: 116 bits (290), Expect = 4.790e-27
Identity = 67/148 (45.27%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    4 LYACGLQGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEKA-PAINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRIIKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKES 444
            LYA  L G+  EFTAYR+LYY+  + +       L   L  L   EKA PAI HAL +R A A+++YH FF LY   PN+  +++   ++  RV+ALR +IK+YRPTI  SFV  EL F  D   + FLQ  GVIFT +  ++ CK S
Sbjct:  752 LYAENLPGNVVEFTAYRLLYYILTKNTLD-----LTTALAHLTKEEKADPAIKHALLIRSAWALSNYHTFFQLYLNAPNMSGYLLDLFVQRERVQALRAMIKSYRPTIPASFVESELGFTEDGQCLKFLQDLGVIFTADDTKIDCKLS 894          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58.16240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ36_9PHAE1.950e-10898.78PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4Q3_ECTSI2.300e-10498.78PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3YM12_HETAK8.790e-3647.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812VZU3_SYMMI1.310e-3047.73Leng8 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3GSG7_9STRA7.170e-2939.13Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
UPI0009E47D761.670e-2842.57leukocyte receptor cluster member 8 homolog n=1 Ta... [more]
A0A7S1Z7R6_9STRA2.580e-2743.42Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3GSQ0_9STRA2.720e-2738.16Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00077AED6F3.080e-2741.89leukocyte receptor cluster member 8 homolog n=1 Ta... [more]
A0A3M6TEY4_POCDA4.790e-2745.27PCI domain-containing protein n=4 Tax=Pocillopora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58contigEcto-sp13_S_contig58:17783..18277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score323.9
Seed ortholog evalue4.2e-86
Seed eggNOG ortholog2880.D7G4Q3
Preferred nameLENG8
Model size495
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons1
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG1861@1,KOG1861@2759
Cds size495
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463803.813121-CDS-Ecto-sp13_S_contig58:17782..182771681463803.813121-CDS-Ecto-sp13_S_contig58:17782..18277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 17783..18277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58.16240.1prot_Ecto-sp13_S_contig58.16240.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58 17783..18277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58.16240.1

>prot_Ecto-sp13_S_contig58.16240.1 ID=prot_Ecto-sp13_S_contig58.16240.1|Name=mRNA_Ecto-sp13_S_contig58.16240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
ELYACGLQGSQEEFTAYRVLYYLYLQTSCSGGSTGLQKILQELPAGEKAP
AINHALRVRKAVAMTDYHLFFSLYKTTPNLGQHIMQKLLKTMRVEALRRI
IKAYRPTISLSFVLGELIFDTDEDGVAFLQACGVIFTPNGAEVACKESSV
DASGLDADAPNSLL*
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mRNA from alignment at Ecto-sp13_S_contig58:17783..18277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58.16240.1 ID=mRNA_Ecto-sp13_S_contig58.16240.1|Name=mRNA_Ecto-sp13_S_contig58.16240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:17783..18277- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTGTACGCCTGCGGGCTTCAGGGATCTCAGGAAGAGTTTACAGCATA CCGCGTGCTGTACTATCTCTACCTTCAAACAAGCTGCTCTGGGGGATCTA CGGGGCTTCAGAAAATTCTTCAGGAGCTGCCGGCTGGCGAGAAAGCCCCG GCAATCAACCACGCTTTGCGTGTTCGAAAGGCAGTGGCAATGACGGACTA CCACCTTTTCTTCTCCTTGTACAAGACCACTCCCAACCTTGGTCAGCACA TCATGCAGAAACTCCTCAAAACAATGCGCGTGGAGGCGTTGCGACGAATT ATCAAGGCGTACCGACCTACGATATCACTATCGTTCGTCCTTGGCGAGCT GATCTTCGATACAGACGAAGATGGAGTGGCATTCCTGCAAGCGTGTGGCG TGATTTTCACACCAAACGGAGCCGAAGTCGCGTGCAAAGAGAGCAGTGTA GACGCGAGCGGACTGGATGCGGACGCCCCAAATTCCCTCTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58:17783..18277-

>mRNA_Ecto-sp13_S_contig58.16240.1 ID=mRNA_Ecto-sp13_S_contig58.16240.1|Name=mRNA_Ecto-sp13_S_contig58.16240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:17783..18277- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTGTACGCCTGCGGGCTTCAGGGATCTCAGGAAGAGTTTACAGCATA
CCGCGTGCTGTACTATCTCTACCTTCAAACAAGCTGCTCTGGGGGATCTA
CGGGGCTTCAGAAAATTCTTCAGGAGCTGCCGGCTGGCGAGAAAGCCCCG
GCAATCAACCACGCTTTGCGTGTTCGAAAGGCAGTGGCAATGACGGACTA
CCACCTTTTCTTCTCCTTGTACAAGACCACTCCCAACCTTGGTCAGCACA
TCATGCAGAAACTCCTCAAAACAATGCGCGTGGAGGCGTTGCGACGAATT
ATCAAGGCGTACCGACCTACGATATCACTATCGTTCGTCCTTGGCGAGCT
GATCTTCGATACAGACGAAGATGGAGTGGCATTCCTGCAAGCGTGTGGCG
TGATTTTCACACCAAACGGAGCCGAAGTCGCGTGCAAAGAGAGCAGTGTA
GACGCGAGCGGACTGGATGCGGACGCCCCAAATTCCCTCTTGTGA
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