mRNA_Ecto-sp13_S_contig5785.16224.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI) HSP 1 Score: 268 bits (686), Expect = 1.220e-80 Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 1
Query: 10 QAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETGGXXXXXXXDLGRENTIGEVERAGVDVPWSASHTAADTRSKAGKNRQHG 495
+AKANGLLEVTALISGD+TRRNIPGN FRRAKARLMKKGAAAGLVPRGEREVDSD GDAK DDDDALP NLPRLWSVSELSRVSEEDSSHT GSKSTRSLGVF S GSRDLETGGXXXXXXXDLG ENTIGE ERA VDVPWSAS TAADT+SKAGK+RQHG
Sbjct: 786 KAKANGLLEVTALISGDHTRRNIPGNTFRRAKARLMKKGAAAGLVPRGEREVDSDTGDAKNDDDDALPANLPRLWSVSELSRVSEEDSSHTGGSKSTRSLGVFDSTGSRDLETGGXXXXXXXDLGLENTIGEAERADVDVPWSASDTAADTKSKAGKHRQHG 947
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE) HSP 1 Score: 261 bits (668), Expect = 5.510e-79 Identity = 147/169 (86.98%), Postives = 151/169 (89.35%), Query Frame = 1
Query: 1 TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETGGXXXXXXXDLGRENTIGEVERAGV--DVPWSASHTAADTRSKAGKNRQHGDG 501
T QAKANGLLEVTALISGDNTRRN+PGNAFR AKARLMKKGAAAGLVP GEREVDSD GDAK DDDDALP NLPRLWSVSELS VSEEDSSHTRGS+ST SLG+F SAGSRDLETGGXXXXX DLGRENTI E ERAGV DVPWSAS TAADTR KAGK+RQHGDG
Sbjct: 650 TALQAKANGLLEVTALISGDNTRRNVPGNAFRHAKARLMKKGAAAGLVPLGEREVDSDTGDAKDDDDDALPANLPRLWSVSELSCVSEEDSSHTRGSQSTLSLGLFVSAGSRDLETGGXXXXX--DLGRENTISEEERAGVGGDVPWSASDTAADTRRKAGKHRQHGDG 816
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: D8LRN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN3_ECTSI) HSP 1 Score: 189 bits (481), Expect = 4.060e-58 Identity = 118/170 (69.41%), Postives = 126/170 (74.12%), Query Frame = 1
Query: 1 TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDD-----ALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETGGXXXXXXXDLGRENTIGEVERAGVDVPWSASHTAADTRSKAGKNRQHG 495
T QAKANGLLEVTAL+SGD TRRNIPGN FRRA ARLM KGAAAGLV RGEREVDSD GDA+ DD ALPTNLPRL SV ELSRVSEEDS+ TR SKS G+FAS SRDLET G DLGREN+IG+ DVP SAS AADT SKAG++RQHG
Sbjct: 38 TALQAKANGLLEVTALMSGDITRRNIPGNTFRRAIARLMSKGAAAGLVSRGEREVDSDTGDAEHVDDAGRAAAALPTNLPRLQSVGELSRVSEEDSTRTRWSKSPCRRGLFASGVSRDLETVGGGG----DLGRENSIGD------DVPRSASDAAADT-SKAGRHRQHG 196
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5KXN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN9_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.710e-29 Identity = 71/113 (62.83%), Postives = 74/113 (65.49%), Query Frame = 1
Query: 13 AKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETG 351
AK NGLLEVTALISGD TR NIPGN FRRA ARLM KGA AGLV RE + ALP NLP L SV ELSRVSE D +HTR SK SLG+F S SRDL G
Sbjct: 51 AKVNGLLEVTALISGDVTRCNIPGNTFRRAIARLMSKGATAGLVSGRAREQAAA----------ALPANLPHLRSVGELSRVSERDPTHTRWSKRPHSLGLFTSGVSRDLGAG 153
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5K906_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K906_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 7.280e-14 Identity = 54/113 (47.79%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 13 AKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETG 351
AK NGLLEVTALISGD TR NIPG+ A A P NLP L SV ELSRVSEED +HTR SK SLG+F S SRDL G
Sbjct: 151 AKVNGLLEVTALISGDVTRCNIPGDTKHDYTAEHA-----------------------------AFPANLPYLRSVRELSRVSEEDPTHTRWSKRPHSLGLFTSGVSRDLGAG 234
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 3.670e-6 Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 1 TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLV 144
TE QAK+NGLLEVT LISG++ +RNIPG AFR+ +L+ K GLV
Sbjct: 1625 TELQAKSNGLLEVTVLISGEHRKRNIPGAAFRKGAGKLLAK---TGLV 1669
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 1.630e-5 Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 10 QAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLP-RLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLET 348
+AK+NGLLEVT LISG++ +RNIPG AFR+ +L+ K AGLV S + + +P+ P SVS + ++E S+ GV S G+ L T
Sbjct: 945 EAKSNGLLEVTVLISGEHRKRNIPGAAFRKGAGKLLAK---AGLV--------SPAAASPANSFRTMPSGRPSNKNSVSSIKSINETSSAVFPEDSEKEGRGVEISTGTSILST 1047 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5785.16224.1 >prot_Ecto-sp13_S_contig5785.16224.1 ID=prot_Ecto-sp13_S_contig5785.16224.1|Name=mRNA_Ecto-sp13_S_contig5785.16224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRback to top mRNA from alignment at Ecto-sp13_S_contig5785:8309..8830- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5785.16224.1 ID=mRNA_Ecto-sp13_S_contig5785.16224.1|Name=mRNA_Ecto-sp13_S_contig5785.16224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5785:8309..8830- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5785:8309..8830- >mRNA_Ecto-sp13_S_contig5785.16224.1 ID=mRNA_Ecto-sp13_S_contig5785.16224.1|Name=mRNA_Ecto-sp13_S_contig5785.16224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5785:8309..8830- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |