mRNA_Ecto-sp13_S_contig5785.16224.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5785.16224.1
Unique NamemRNA_Ecto-sp13_S_contig5785.16224.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 1.220e-80
Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 1
Query:   10 QAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETGGXXXXXXXDLGRENTIGEVERAGVDVPWSASHTAADTRSKAGKNRQHG 495
            +AKANGLLEVTALISGD+TRRNIPGN FRRAKARLMKKGAAAGLVPRGEREVDSD GDAK DDDDALP NLPRLWSVSELSRVSEEDSSHT GSKSTRSLGVF S GSRDLETGGXXXXXXXDLG ENTIGE ERA VDVPWSAS TAADT+SKAGK+RQHG
Sbjct:  786 KAKANGLLEVTALISGDHTRRNIPGNTFRRAKARLMKKGAAAGLVPRGEREVDSDTGDAKNDDDDALPANLPRLWSVSELSRVSEEDSSHTGGSKSTRSLGVFDSTGSRDLETGGXXXXXXXDLGLENTIGEAERADVDVPWSASDTAADTKSKAGKHRQHG 947          
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 5.510e-79
Identity = 147/169 (86.98%), Postives = 151/169 (89.35%), Query Frame = 1
Query:    1 TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETGGXXXXXXXDLGRENTIGEVERAGV--DVPWSASHTAADTRSKAGKNRQHGDG 501
            T  QAKANGLLEVTALISGDNTRRN+PGNAFR AKARLMKKGAAAGLVP GEREVDSD GDAK DDDDALP NLPRLWSVSELS VSEEDSSHTRGS+ST SLG+F SAGSRDLETGGXXXXX  DLGRENTI E ERAGV  DVPWSAS TAADTR KAGK+RQHGDG
Sbjct:  650 TALQAKANGLLEVTALISGDNTRRNVPGNAFRHAKARLMKKGAAAGLVPLGEREVDSDTGDAKDDDDDALPANLPRLWSVSELSCVSEEDSSHTRGSQSTLSLGLFVSAGSRDLETGGXXXXX--DLGRENTISEEERAGVGGDVPWSASDTAADTRRKAGKHRQHGDG 816          
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: D8LRN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN3_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 4.060e-58
Identity = 118/170 (69.41%), Postives = 126/170 (74.12%), Query Frame = 1
Query:    1 TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDD-----ALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETGGXXXXXXXDLGRENTIGEVERAGVDVPWSASHTAADTRSKAGKNRQHG 495
            T  QAKANGLLEVTAL+SGD TRRNIPGN FRRA ARLM KGAAAGLV RGEREVDSD GDA+  DD      ALPTNLPRL SV ELSRVSEEDS+ TR SKS    G+FAS  SRDLET G       DLGREN+IG+      DVP SAS  AADT SKAG++RQHG
Sbjct:   38 TALQAKANGLLEVTALMSGDITRRNIPGNTFRRAIARLMSKGAAAGLVSRGEREVDSDTGDAEHVDDAGRAAAALPTNLPRLQSVGELSRVSEEDSTRTRWSKSPCRRGLFASGVSRDLETVGGGG----DLGRENSIGD------DVPRSASDAAADT-SKAGRHRQHG 196          
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5KXN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.710e-29
Identity = 71/113 (62.83%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   13 AKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETG 351
            AK NGLLEVTALISGD TR NIPGN FRRA ARLM KGA AGLV    RE  +           ALP NLP L SV ELSRVSE D +HTR SK   SLG+F S  SRDL  G
Sbjct:   51 AKVNGLLEVTALISGDVTRCNIPGNTFRRAIARLMSKGATAGLVSGRAREQAAA----------ALPANLPHLRSVGELSRVSERDPTHTRWSKRPHSLGLFTSGVSRDLGAG 153          
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5K906_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K906_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.280e-14
Identity = 54/113 (47.79%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   13 AKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLETG 351
            AK NGLLEVTALISGD TR NIPG+      A                                A P NLP L SV ELSRVSEED +HTR SK   SLG+F S  SRDL  G
Sbjct:  151 AKVNGLLEVTALISGDVTRCNIPGDTKHDYTAEHA-----------------------------AFPANLPYLRSVRELSRVSEEDPTHTRWSKRPHSLGLFTSGVSRDLGAG 234          
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.670e-6
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLV 144
            TE QAK+NGLLEVT LISG++ +RNIPG AFR+   +L+ K    GLV
Sbjct: 1625 TELQAKSNGLLEVTVLISGEHRKRNIPGAAFRKGAGKLLAK---TGLV 1669          
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.630e-5
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 1
Query:   10 QAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPRGEREVDSDVGDAKIDDDDALPTNLP-RLWSVSELSRVSEEDSSHTRGSKSTRSLGVFASAGSRDLET 348
            +AK+NGLLEVT LISG++ +RNIPG AFR+   +L+ K   AGLV        S    +  +    +P+  P    SVS +  ++E  S+           GV  S G+  L T
Sbjct:  945 EAKSNGLLEVTVLISGEHRKRNIPGAAFRKGAGKLLAK---AGLV--------SPAAASPANSFRTMPSGRPSNKNSVSSIKSINETSSAVFPEDSEKEGRGVEISTGTSILST 1047          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5785.16224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LB74_ECTSI1.220e-8090.74Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KC42_9PHAE5.510e-7986.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRN3_ECTSI4.060e-5869.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXN9_9PHAE1.710e-2962.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K906_9PHAE7.280e-1447.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL8_9PHAE3.670e-660.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX04_ECTSI1.630e-535.96Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5785contigEcto-sp13_S_contig5785:8309..8830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000440.1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.9839373-CDS-Ecto-sp13_S_contig5785:8308..88301681463801.9839373-CDS-Ecto-sp13_S_contig5785:8308..8830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5785 8309..8830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5785.16224.1prot_Ecto-sp13_S_contig5785.16224.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5785 8309..8830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5785.16224.1

>prot_Ecto-sp13_S_contig5785.16224.1 ID=prot_Ecto-sp13_S_contig5785.16224.1|Name=mRNA_Ecto-sp13_S_contig5785.16224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
TEQQAKANGLLEVTALISGDNTRRNIPGNAFRRAKARLMKKGAAAGLVPR
GEREVDSDVGDAKIDDDDALPTNLPRLWSVSELSRVSEEDSSHTRGSKST
RSLGVFASAGSRDLETGGGGGGGGGDLGRENTIGEVERAGVDVPWSASHT
AADTRSKAGKNRQHGDGGGGGSGG
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mRNA from alignment at Ecto-sp13_S_contig5785:8309..8830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5785.16224.1 ID=mRNA_Ecto-sp13_S_contig5785.16224.1|Name=mRNA_Ecto-sp13_S_contig5785.16224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5785:8309..8830- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGAACAACAGGCGAAAGCGAACGGCCTGCTGGAGGTCACGGCCCTGAT CAGCGGCGATAACACCCGTCGCAACATCCCCGGGAATGCCTTCCGTCGCG CCAAGGCCAGGCTCATGAAGAAGGGGGCCGCCGCGGGCCTCGTCCCGCGG GGCGAGCGAGAGGTCGACAGCGACGTAGGGGACGCCAAGATCGACGACGA CGACGCCTTACCAACCAACCTGCCGCGCCTCTGGTCCGTCAGCGAGCTGT CGCGCGTTTCGGAGGAAGACTCTTCGCACACCCGAGGGAGCAAGAGCACC CGCAGCCTCGGTGTGTTCGCCAGCGCCGGCAGCAGGGACCTGGAGACCGG CGGCGGCGGCGGCGGCGGCGGCGGCGACCTTGGTCGCGAGAACACCATCG GCGAGGTGGAGCGGGCGGGCGTCGATGTTCCATGGTCTGCGAGCCACACC GCCGCAGACACGAGAAGTAAGGCCGGGAAGAACCGTCAGCACGGAGACGG CGGCGGCGGCGGCAGCGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5785:8309..8830-

>mRNA_Ecto-sp13_S_contig5785.16224.1 ID=mRNA_Ecto-sp13_S_contig5785.16224.1|Name=mRNA_Ecto-sp13_S_contig5785.16224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5785:8309..8830- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGAACAACAGGCGAAAGCGAACGGCCTGCTGGAGGTCACGGCCCTGAT
CAGCGGCGATAACACCCGTCGCAACATCCCCGGGAATGCCTTCCGTCGCG
CCAAGGCCAGGCTCATGAAGAAGGGGGCCGCCGCGGGCCTCGTCCCGCGG
GGCGAGCGAGAGGTCGACAGCGACGTAGGGGACGCCAAGATCGACGACGA
CGACGCCTTACCAACCAACCTGCCGCGCCTCTGGTCCGTCAGCGAGCTGT
CGCGCGTTTCGGAGGAAGACTCTTCGCACACCCGAGGGAGCAAGAGCACC
CGCAGCCTCGGTGTGTTCGCCAGCGCCGGCAGCAGGGACCTGGAGACCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGACCTTGGTCGCGAGAACACCATCG
GCGAGGTGGAGCGGGCGGGCGTCGATGTTCCATGGTCTGCGAGCCACACC
GCCGCAGACACGAGAAGTAAGGCCGGGAAGAACCGTCAGCACGGAGACGG
CGGCGGCGGCGGCAGCGGAGGG
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