mRNA_Ecto-sp13_S_contig5785.16223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5785.16223.1
Unique NamemRNA_Ecto-sp13_S_contig5785.16223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Match: D8LRN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN4_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.850e-55
Identity = 100/115 (86.96%), Postives = 103/115 (89.57%), Query Frame = 3 
Query:  201 MRGAGQPGGSPLDDSGTGLQQSKLTVEILERALGEPVMAAVVAAKKAEARVPANSELHPPYNLNGMTEALRELVGTETSSGRLQVVVSGPGGFVFHVEGLLADLHIPPEAVVTLD 545
            MRGAGQPGGS LDDSGTG Q SKLTVEILERALGEPVM AVVA K+AEARV A SEL PPY+LN MT+ LRELVG ETSSGRLQVVVSGP GFVFHVEGLLADLHIPPEAVVTLD
Sbjct:    1 MRGAGQPGGSLLDDSGTGRQHSKLTVEILERALGEPVMTAVVATKEAEARVTAKSELRPPYDLNRMTDTLRELVGIETSSGRLQVVVSGPAGFVFHVEGLLADLHIPPEAVVTLD 115
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BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 7.140e-27
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 3 
Query:   33 GRSNPTAPRFHSSHRSEIGTRGGVADDSSGNGQGRPPKTFGARRKGRRWASRDRSAMRGAGQPGGSPLDDSG 248
            GR  PTAPRFHSS+RS+IGTR GVADDSSGNGQGRPPKT GARRKGRRWASRDRSAMR AGQPGGSPLDD G
Sbjct: 1102 GRIKPTAPRFHSSYRSKIGTRDGVADDSSGNGQGRPPKTVGARRKGRRWASRDRSAMRAAGQPGGSPLDDEG 1173
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BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.370e-19
Identity = 53/68 (77.94%), Postives = 55/68 (80.88%), Query Frame = 3 
Query:   39 SNPTAPRFHSSHRSEIGTRGGVADDSSGNGQGRPPKTFGARRKGRRWASRDRSAMRGAGQPGGSPLDD 242
            S  T PR HSS+RS IGTR G ADDSSGNGQG PPK  GA+RKGRRWASRD  AMRGA QPGGSPLDD
Sbjct:  854 SKSTPPRSHSSYRSNIGTRNGAADDSSGNGQGPPPKAVGAQRKGRRWASRDGPAMRGARQPGGSPLDD 921
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BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Match: A0A6H5J9F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-12
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:  228 SPLDDSGTGLQQSKLTVEILERALGEPVMAAVVA-AKKAEAR----------VPANSELHPPYNLNGMTEALRELVGTETSSGRLQVVVSGPGGFVFHVEGLLADLHIPPEAVVTLD 545
            S   D G GL + K+T EIL++A G  ++A +   AK+ ++R               +   P +  G+T  L +L GT+T  G+LQVVVSGP GFVF+VE +LA++ +P EA+V LD
Sbjct:    4 SECSDLGDGLLRGKVTREILQKAFGPALLALLEEFAKQEQSRHXXXXXXXXXXXXKRDEGSPEDARGIT--LDDLAGTDTEGGKLQVVVSGPNGFVFYVESILAEMGVPSEAIVFLD 118
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BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Match: A0A6H5K906_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K906_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.220e-11
Identity = 43/59 (72.88%), Postives = 44/59 (74.58%), Query Frame = 3 
Query:   27 GGGRSNPTAPRFHSSHRSEIGTRGGVADDSSGNGQGRPPKTFGARRKGRRWASRDRSAM 203
            GG  S PTA RF SS R +IGT   VADD SG GQGR PK FGARRKGRRWASRD SAM
Sbjct:  393 GGDTSKPTALRFRSSFRPKIGTEYDVADDFSGTGQGRQPKAFGARRKGRRWASRDTSAM 451
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BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.540e-6
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 3 
Query:  228 SPLDDS-----GTGLQQSKLTVEILERALGEPVMAAVVAAKKAEA-RVPANSELHPPYNLNGMTEALRELVGTETSSGRLQVVVSGPGGFVFHVEGLLADLHIPPEAVVTLD 545
            +P+ D+     G GL + ++  EILE   GE +++++ A  +  A    A S+     N  G  E  R+L+GT+ ++G+LQVVVSGP  FV +V+ LL ++ +P  + V LD
Sbjct: 1379 APMQDTSNYQVGDGLVRGRVNREILETVFGEALISSIAAYNRQRALNSLACSDSDVGDNKEGEGEDDRDLIGTDQTAGKLQVVVSGPTAFVANVKQLLTEMGVPAGSTVLLD 1490
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BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Match: A0A6H5JTF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.710e-6
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 3 
Query:  246 GTGLQQSKLTVEILERALGEPVMAAVVAAKKAEA-RVPANSELHPPYNLNGMTEALRELVGTETSSGRLQVVVSGPGGFVFHVEGLLADLHIPPEAVVTLD 545
            G GL + ++  EILE   GE +++++ A  +  A    A S+        G  E   EL+GT+ ++G+LQVVVSGP  FV +V+ LL  + +P  + V LD
Sbjct:  239 GDGLVRGRVNREILENVFGEALLSSIAAYNRQRALNSLACSDSDVGDEKEGQGEDDGELIGTDQTAGKLQVVVSGPTAFVANVKQLLTQMGVPAGSTVLLD 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5785.16223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRN4_ECTSI3.850e-5586.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB74_ECTSI7.140e-2788.89Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KC42_9PHAE4.370e-1977.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9F0_9PHAE1.380e-1240.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K906_9PHAE3.220e-1172.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J2_ECTSI1.540e-635.71Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JTF1_9PHAE9.710e-636.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5785contigEcto-sp13_S_contig5785:5326..7911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.5
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog2880.D7G7J2
Model size1629
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000450.1
Cds size348
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.8910146-UTR-Ecto-sp13_S_contig5785:5325..64061681463801.8910146-UTR-Ecto-sp13_S_contig5785:5325..6406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5785 5326..6406 -
1681463801.946784-UTR-Ecto-sp13_S_contig5785:7711..79111681463801.946784-UTR-Ecto-sp13_S_contig5785:7711..7911Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5785 7712..7911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.9038825-CDS-Ecto-sp13_S_contig5785:6406..65021681463801.9038825-CDS-Ecto-sp13_S_contig5785:6406..6502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5785 6407..6502 -
1681463801.9168963-CDS-Ecto-sp13_S_contig5785:6723..69331681463801.9168963-CDS-Ecto-sp13_S_contig5785:6723..6933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5785 6724..6933 -
1681463801.933361-CDS-Ecto-sp13_S_contig5785:7669..77111681463801.933361-CDS-Ecto-sp13_S_contig5785:7669..7711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5785 7670..7711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5785.16223.1prot_Ecto-sp13_S_contig5785.16223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5785 6407..7711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5785.16223.1

>prot_Ecto-sp13_S_contig5785.16223.1 ID=prot_Ecto-sp13_S_contig5785.16223.1|Name=mRNA_Ecto-sp13_S_contig5785.16223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MRGAGQPGGSPLDDSGTGLQQSKLTVEILERALGEPVMAAVVAAKKAEAR
VPANSELHPPYNLNGMTEALRELVGTETSSGRLQVVVSGPGGFVFHVEGL
LADLHIPPEAVVTLD*
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mRNA from alignment at Ecto-sp13_S_contig5785:5326..7911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5785.16223.1 ID=mRNA_Ecto-sp13_S_contig5785.16223.1|Name=mRNA_Ecto-sp13_S_contig5785.16223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5785:5326..7911- (Ectocarpus species13 EcNAP12_S_4_19m)
ATAATGATGGTGGTGGTGAGGGCAGCGGCGGCGGCAGAAGCAACCCTACC
GCCCCCCGGTTCCATTCTTCTCACCGGTCGGAGATCGGTACGCGGGGTGG
CGTCGCGGACGATTCCTCGGGCAACGGGCAAGGGCGACCACCCAAGACTT
TTGGGGCGCGGAGAAAGGGGAGGCGATGGGCATCGAGGGACAGGTCAGCG
ATGCGAGGCGCGGGACAGCCGGGAGGATCGCCCCTCGATGACGTGAGAAG
ACCCCAACTCGTGTACGAGGGTCGGGTTGTTGGTTTGTTGATGAAAACCC
GGCTAGCTGAAGGCAGTTGATGAGGCACTCTTGCGTGTTGCTTGTTTCCC
TGCCCGTTTCGCTTGCCATACACTATGGATCCCAAGAGGGATAAGCTACG
TGAAACATCTGATGCGAATGGTGTGCATCGCATGTCAAGGATGCGTGCCC
CCATGATGATGCTTCAGCAAGCACCTCGTTGGCACCAGTAGCATGTCCGG
AGCAATAGCGGACGTACAGTAGACAGACGCTTCCAGCACCCTAAAAAGCT
GGAAACATACGGTTCCCTTGAGCATCTCCGCCCACGTCAACACGAATTGC
CCCACGGTCACAATATTTGTGATGCCCCTCCGTTGTCATCCGTTGTTGCT
CGTGCGCAGTCGAGCAGTCCATCGACCCGTACCGCCCAGCGACGGCGACG
GCATACCCAGCCTTTTGTTGTTTGCTTTTTCCTCCCTCTCGAACCTGCTC
CGCGGCCAAGAAACAAAAACTCGTTGTGTGTCTCAATGCAAACAAGTAAG
GCAGGCACCTGATCAACCTCCTGTTGTTCTGCGTTCCTTCCTTTTCGCGC
TTTCTACCTCTGGAACACCAATCAAAACCTCGGCACGCGACGCGAACAAC
ATTACAAACATGCCACCACGAACGCACGTGAACTACACATAAACTCCTGG
ATGGTATGAACTCTCGGACGGTACACAGTCGGGCACCGGGCTGCAGCAAT
CCAAGCTGACGGTGGAAATCCTCGAGAGGGCTCTAGGCGAGCCTGTCATG
GCGGCCGTAGTCGCCGCCAAGAAGGCCGAGGCACGGGTACCGGCGAACTC
GGAGCTTCACCCGCCGTACAACCTCAATGGCATGACCGAAGCTCTTCGCG
AGCTTGTCGGCACCGAAACGTCTAGCGGACGCCTCCAGGTGAGGAAACGC
CACACAGGGGTGGGTGGACGGCTTGCGGTGTGATGAGGAACTATTGAGGT
ACTGGGATCGATAGGCCATGATACATTATATAGCCGTGGACCAGCTTTGG
TGGTGGATATATATCCCTAGACAACGGCTCAGATAATGGACAACAAAAAC
AACAGCAGCAGCGACAATTCAAGTTTGTTTTTTGCGTGCCCCCGTTCCAC
GCCTGGCAGGTGGTTGTGTCCGGACCAGGGGGCTTCGTGTTCCACGTGGA
GGGCCTCCTGGCGGATCTGCACATCCCTCCGGAGGCGGTGGTGACTCTCG
ATTAGCCTAGAGTTGCAGTTGAGAGCTACGCCTTACAGCAATGACTTTGT
GCGTGTCGGAAAAATTGCCGATCAGCGACGATACGTTGCTCATACCCTGC
CTGCTGCAAGTTTCGGTGGATGTAGAGGGAGTGGCCGCCCCTCAATCGAA
GTCATACGCTATATTTCCTTCATTTTTAGGCATACTTGGAACGGACTGCG
CACATCGTTGTGATCTATGCTTCTGCCATCGTGCCGTGTAGGGAGGATGT
GTGGAGATTTTTTAAACATCGTTTTTGTTGTCAGGTGTGGCGTTTTAGGC
TCCTCGAGCGAAACCTCTTCTTATGCTGTGTGGGCGGTTGGAGCTTGGAA
AACCCCACAGCCGGCAGTCGGATTTTCGTGCTTAGGGAACGTTTACAGCT
GGGCTGGTCGAAGCTTGGAAATGCGCAGCCGTTAGATGGCAGCCAGTTGC
CGTATAGGGAGGTTGTGTGTAGATTTTTTTGTATATCGTTTTTGTTGTTG
GGTGTGTGTGGTGTTCTGGGCTCCTCGTGTAAAACCTCTCAATTAAGCTG
TGTGGGAGGTTGGAGCTTGGAAACCCCTACAGCCGACAGTCAGCTTTTTG
AACCTGGGAAAAGTTTACAGCTGGGCTTGTCGAAGCTTGGAAACGCGCAG
CCGTCAGATGGTAGCTAGGTGTCGTGTAGGGAAGGTTGTGTGTAGACTTG
TACATGTTTTTTTTGCTCGGTGTGGTGCTCTGGGTTCCTCAAGTAAATCC
TCTTAATGAAGCTGTGTGGGAGCTTGAGAAACCCCACTGCCGGCAGTCAG
CTTTTCGATCTTGGAGAAAGTTTACAGTTGGGTTGATCGAAGCTTGGAAA
CGCGCAGCCGTTTGTTGAAGCCAGCAGTCTTGAGCGGGCGGTTGATTTTG
AGCTCCACCCCAAACGCTAGTAATATCTCTCAAACACGTCGCGCCACCGC
GCATGATTCGCTACCACCATGGCTCATGAATTCGTCTTGCATCACCCAAT
GATGGCGGTGTGCTCTCATGATCCCACCCCGCACGACAGTTTCGTAGGTG
ATGCCCGAATCGGTCAGGATTCCACCTGGTGAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5785:5326..7911-

>mRNA_Ecto-sp13_S_contig5785.16223.1 ID=mRNA_Ecto-sp13_S_contig5785.16223.1|Name=mRNA_Ecto-sp13_S_contig5785.16223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5785:5326..7911- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGGCGCGGGACAGCCGGGAGGATCGCCCCTCGATGACTCGGGCAC
CGGGCTGCAGCAATCCAAGCTGACGGTGGAAATCCTCGAGAGGGCTCTAG
GCGAGCCTGTCATGGCGGCCGTAGTCGCCGCCAAGAAGGCCGAGGCACGG
GTACCGGCGAACTCGGAGCTTCACCCGCCGTACAACCTCAATGGCATGAC
CGAAGCTCTTCGCGAGCTTGTCGGCACCGAAACGTCTAGCGGACGCCTCC
AGGTGGTTGTGTCCGGACCAGGGGGCTTCGTGTTCCACGTGGAGGGCCTC
CTGGCGGATCTGCACATCCCTCCGGAGGCGGTGGTGACTCTCGATTAG
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