mRNA_Ecto-sp13_S_contig5784.16220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5784.16220.1
Unique NamemRNA_Ecto-sp13_S_contig5784.16220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5784.16220.1 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.640e-40
Identity = 102/118 (86.44%), Postives = 105/118 (88.98%), Query Frame = 1 
Query:   19 TAHIIMGAIPGGNTVAAVVHEAGRWVSQPLSTTAFAATTPATPRLFSSSSSIRSTATRVGSWGGESGYDYADGSGGSREPRRXXXXXXXXXXXXXXXXXXXGVRGRAREEWQSSSAAS 372
            TA IIMG +PGGNT AAVV EAGRWV+QPL+TTAFAATTPATPRLFSSSS IRSTATRVGSWGGESGYDYADGS GSREPRR XXXXX  XXXXXXXXXXX   GRAREEWQ SSAAS
Sbjct:    4 TADIIMGVVPGGNTAAAVVQEAGRWVTQPLTTTAFAATTPATPRLFSSSS-IRSTATRVGSWGGESGYDYADGSSGSREPRRGXXXXXFSXXXXXXXXXXXXXXGRAREEWQGSSAAS 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5784.16220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB51_ECTSI1.640e-4086.44SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5784contigEcto-sp13_S_contig5784:1743..2114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.1
Seed ortholog evalue4.4e-35
Seed eggNOG ortholog2880.D8LB51
Model size372
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_005200.1
Cds size372
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.7689977-CDS-Ecto-sp13_S_contig5784:1742..21141681463801.7689977-CDS-Ecto-sp13_S_contig5784:1742..2114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5784 1743..2114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5784.16220.1prot_Ecto-sp13_S_contig5784.16220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5784 1743..2114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5784.16220.1

>prot_Ecto-sp13_S_contig5784.16220.1 ID=prot_Ecto-sp13_S_contig5784.16220.1|Name=mRNA_Ecto-sp13_S_contig5784.16220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
HDHNKRTAHIIMGAIPGGNTVAAVVHEAGRWVSQPLSTTAFAATTPATPR
LFSSSSSIRSTATRVGSWGGESGYDYADGSGGSREPRRGGRGGRSSGRGG
RGRGNRGGVRGRAREEWQSSSAAS
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mRNA from alignment at Ecto-sp13_S_contig5784:1743..2114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5784.16220.1 ID=mRNA_Ecto-sp13_S_contig5784.16220.1|Name=mRNA_Ecto-sp13_S_contig5784.16220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5784:1743..2114+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGACCACAACAAAAGAACAGCACACATTATCATGGGTGCCATTCCAGG
AGGCAACACGGTTGCCGCTGTGGTACATGAAGCCGGACGATGGGTCTCGC
AACCCCTTTCCACAACCGCTTTCGCGGCGACCACGCCAGCAACACCACGT
TTATTCTCGAGCAGCTCCAGCATCCGCAGTACTGCAACGAGGGTTGGGTC
ATGGGGGGGCGAGAGCGGCTACGACTACGCCGACGGCAGCGGCGGCAGCC
GAGAGCCGAGACGGGGAGGACGAGGGGGGAGATCTTCTGGTAGAGGAGGA
CGGGGCAGAGGGAACCGGGGTGGTGTGAGGGGAAGGGCGAGGGAAGAGTG
GCAAAGCTCTTCTGCGGCGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5784:1743..2114+

>mRNA_Ecto-sp13_S_contig5784.16220.1 ID=mRNA_Ecto-sp13_S_contig5784.16220.1|Name=mRNA_Ecto-sp13_S_contig5784.16220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5784:1743..2114+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGACCACAACAAAAGAACAGCACACATTATCATGGGTGCCATTCCAGG
AGGCAACACGGTTGCCGCTGTGGTACATGAAGCCGGACGATGGGTCTCGC
AACCCCTTTCCACAACCGCTTTCGCGGCGACCACGCCAGCAACACCACGT
TTATTCTCGAGCAGCTCCAGCATCCGCAGTACTGCAACGAGGGTTGGGTC
ATGGGGGGGCGAGAGCGGCTACGACTACGCCGACGGCAGCGGCGGCAGCC
GAGAGCCGAGACGGGGAGGACGAGGGGGGAGATCTTCTGGTAGAGGAGGA
CGGGGCAGAGGGAACCGGGGTGGTGTGAGGGGAAGGGCGAGGGAAGAGTG
GCAAAGCTCTTCTGCGGCGAGC
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