mRNA_Ecto-sp13_S_contig57834.16219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57834.16219.1
Unique NamemRNA_Ecto-sp13_S_contig57834.16219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: D7FQV6_ECTSI (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQV6_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 7.160e-39
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            VVHPLVLLSTVDHYNRVA+DAKKRVVGVLLGSKYKGTVDVTNSFAVPFEED+RNPNIWYLDHNFLEGM
Sbjct:   74 VVHPLVLLSTVDHYNRVARDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDVRNPNIWYLDHNFLEGM 141          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A835Z1W9_9STRA (26S proteasome non-ATPase regulatory subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.790e-35
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            VVHPLVLLS VDHYNRVAKD KKR VGVLLGSKYKGTVDVTNSFAVPFEED RNP++WYLDHNFLE M
Sbjct:   34 VVHPLVLLSVVDHYNRVAKDTKKRAVGVLLGSKYKGTVDVTNSFAVPFEEDSRNPSVWYLDHNFLESM 101          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A6S9JFQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JFQ0_HETAK)

HSP 1 Score: 129 bits (323), Expect = 1.140e-34
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            VVHPLVLLS VDHYNRVAKD KKRVVGVLLGS +KGTVDVTNSFAVPFEEDL+NP IWYLDHN+LE M
Sbjct:   27 VVHPLVLLSAVDHYNRVAKDTKKRVVGVLLGSTFKGTVDVTNSFAVPFEEDLKNPTIWYLDHNYLENM 94          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: W7U155_9STRA (26s proteasome regulatory subunit n8 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U155_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.020e-34
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            +VHPLVLLSTVDHYNRVAKD +KRVVGVLLG+ ++G +D+TNSFAVPFEEDL+NP +WYLDHN+LE M
Sbjct:   48 IVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESM 115          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A7S2XZZ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZZ4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.070e-33
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            V+HPLVLLS VDHYNRVAKD KKRVVGVLLG   +GTVDVTNSFAVPFEEDLRNP IWYLDHNFLE M
Sbjct:   36 VIHPLVLLSAVDHYNRVAKDTKKRVVGVLLGQSTRGTVDVTNSFAVPFEEDLRNPAIWYLDHNFLENM 103          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A482SJ26_9ARCH (MPN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ26_9ARCH)

HSP 1 Score: 117 bits (294), Expect = 6.230e-33
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            VVHPLVLLS  DHYNRVAKD KKRVVGVLLGS+ +  VD+TNSFAVPFEEDL NP +W+LDHN+LE M
Sbjct:   20 VVHPLVLLSAADHYNRVAKDTKKRVVGVLLGSRTRNKVDITNSFAVPFEEDLNNPKVWFLDHNYLESM 87          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A812VEV3_SYMMI (RPN8A protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VEV3_SYMMI)

HSP 1 Score: 119 bits (297), Expect = 1.520e-32
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            +VHPLVLLS  DHYNRVAKD KKRVVGVLLGS+++  VD+TNSFAVPFEED RNP++W+LDHNFLE M
Sbjct:   12 IVHPLVLLSAADHYNRVAKDTKKRVVGVLLGSRHRNEVDITNSFAVPFEEDPRNPSVWFLDHNFLEEM 79          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A1D2A8M2_AUXPR (MPN domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A8M2_AUXPR)

HSP 1 Score: 122 bits (305), Expect = 3.460e-32
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            V+HPLVLLS VDHYNRVAKD KKRVVGVLLG KYKG +D TNSFAVPFEED R+P+IW+LDHN+LE M
Sbjct:   10 VIHPLVLLSVVDHYNRVAKDTKKRVVGVLLGEKYKGRIDATNSFAVPFEEDERDPSIWFLDHNYLENM 77          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A7N0TH77_KALFE (MPN domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TH77_KALFE)

HSP 1 Score: 117 bits (292), Expect = 4.670e-32
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            +VHPLVLLS VDHYNRVA+D KKRV+GVLLGS +KGTVDVTN++AVPFEED ++P+IW+LDHNF E M
Sbjct:   18 IVHPLVLLSIVDHYNRVARDTKKRVIGVLLGSSFKGTVDVTNTYAVPFEEDDKDPSIWFLDHNFHEAM 85          
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A7S3NMR9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMR9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.180e-32
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 2
Query:    2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
            VVHPLVLLSTVDHYNRVAKD KKRVVG+LLG++ +  VDVTNSFAVPFEEDL+NP+IWYLDHN+LE M
Sbjct:   40 VVHPLVLLSTVDHYNRVAKDTKKRVVGILLGTRSRNVVDVTNSFAVPFEEDLKNPSIWYLDHNYLETM 107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQV6_ECTSI7.160e-3997.06MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z1W9_9STRA1.790e-3589.7126S proteasome non-ATPase regulatory subunit 7 n=1... [more]
A0A6S9JFQ0_HETAK1.140e-3488.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U155_9STRA9.020e-3477.9426s proteasome regulatory subunit n8 n=1 Tax=Nanno... [more]
A0A7S2XZZ4_9STRA2.070e-3386.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SJ26_9ARCH6.230e-3377.94MPN domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A812VEV3_SYMMI1.520e-3277.94RPN8A protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A1D2A8M2_AUXPR3.460e-3280.88MPN domain-containing protein n=2 Tax=Auxenochlore... [more]
A0A7N0TH77_KALFE4.670e-3276.47MPN domain-containing protein n=1 Tax=Kalanchoe fe... [more]
A0A7S3NMR9_9STRA5.180e-3282.35Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57834contigEcto-sp13_S_contig57834:54..714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size212
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.7198637-CDS-Ecto-sp13_S_contig57834:53..1341681463801.7198637-CDS-Ecto-sp13_S_contig57834:53..134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57834 54..134 -
1681463801.7372043-CDS-Ecto-sp13_S_contig57834:585..7141681463801.7372043-CDS-Ecto-sp13_S_contig57834:585..714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57834 586..714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57834.16219.1prot_Ecto-sp13_S_contig57834.16219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57834 54..714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57834.16219.1

>prot_Ecto-sp13_S_contig57834.16219.1 ID=prot_Ecto-sp13_S_contig57834.16219.1|Name=mRNA_Ecto-sp13_S_contig57834.16219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
GSAPVGTPFHGGSLQPGGKGREEAGRGGIAGVQVQGHRRRNKQLRCSVRG
GPPQPKHLVPRPQLLGRYA*
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mRNA from alignment at Ecto-sp13_S_contig57834:54..714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57834.16219.1 ID=mRNA_Ecto-sp13_S_contig57834.16219.1|Name=mRNA_Ecto-sp13_S_contig57834.16219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57834:54..714- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGTGCACCCGTTGGTACTCCTTTCCACGGTGGATCACTACAACCGGG TGGCAAAGGACGCGAAGAAGCGGGTCGTGGGGGTATTGCTGGGGTCCAAG TACAAGGGCACCGTCGACGTAACAAACAGGTACGTAGAAGTGCGTGTCGG CCTGAGGCTACTTCTTCCCGATTGTCACACTGACCGTACCGCATATGATA GTCCCTTCGTTTTTCGATTTTTCTTCTCGTGGAGGATTGGACCTTGGCCT CTAGCGTGCGTGTGTCGCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTA CTTGATGGCTGTCTCGTGTTCTCTCGATTCGTACACCCACCAGCCCTTCC ATCTGATCGGCCGACCAAGTTCGGTGGTGGTGATCGACCTCACTGCACCG AAGCATGCTGGTTCGAAGTATTTCCCCTCATTTTTCTGCGTTCGTGTCGT TGCTTTAGGGTGACCTGTGCCCACCCCCCCCCTGGCTTATTCTCCTTCTC GCCGGTTTCTGGCCTGGTCTTGTGTTTCACCACCCTTCCTGCCGCGACTT TTGCGCAAACCGCATCGTGACCATGGTCAGCTTCGCTGTTCCGTTCGAGG AGGACCTCCGCAACCCAAACATCTGGTACCTCGACCACAACTTCTTGGAA GGTATGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57834:54..714-

>mRNA_Ecto-sp13_S_contig57834.16219.1 ID=mRNA_Ecto-sp13_S_contig57834.16219.1|Name=mRNA_Ecto-sp13_S_contig57834.16219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57834:54..714- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAGTGCACCCGTTGGTACTCCTTTCCACGGTGGATCACTACAACCGGG
TGGCAAAGGACGCGAAGAAGCGGGTCGTGGGGGTATTGCTGGGGTCCAAG
TACAAGGGCACCGTCGACGTAACAAACAGCTTCGCTGTTCCGTTCGAGGA
GGACCTCCGCAACCCAAACATCTGGTACCTCGACCACAACTTCTTGGAAG
GTATGCGTAG
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