mRNA_Ecto-sp13_S_contig57834.16219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: D7FQV6_ECTSI (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQV6_ECTSI) HSP 1 Score: 140 bits (354), Expect = 7.160e-39 Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
VVHPLVLLSTVDHYNRVA+DAKKRVVGVLLGSKYKGTVDVTNSFAVPFEED+RNPNIWYLDHNFLEGM
Sbjct: 74 VVHPLVLLSTVDHYNRVARDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDVRNPNIWYLDHNFLEGM 141
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A835Z1W9_9STRA (26S proteasome non-ATPase regulatory subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W9_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.790e-35 Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
VVHPLVLLS VDHYNRVAKD KKR VGVLLGSKYKGTVDVTNSFAVPFEED RNP++WYLDHNFLE M
Sbjct: 34 VVHPLVLLSVVDHYNRVAKDTKKRAVGVLLGSKYKGTVDVTNSFAVPFEEDSRNPSVWYLDHNFLESM 101
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A6S9JFQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JFQ0_HETAK) HSP 1 Score: 129 bits (323), Expect = 1.140e-34 Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
VVHPLVLLS VDHYNRVAKD KKRVVGVLLGS +KGTVDVTNSFAVPFEEDL+NP IWYLDHN+LE M
Sbjct: 27 VVHPLVLLSAVDHYNRVAKDTKKRVVGVLLGSTFKGTVDVTNSFAVPFEEDLKNPTIWYLDHNYLENM 94
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: W7U155_9STRA (26s proteasome regulatory subunit n8 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U155_9STRA) HSP 1 Score: 122 bits (305), Expect = 9.020e-34 Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
+VHPLVLLSTVDHYNRVAKD +KRVVGVLLG+ ++G +D+TNSFAVPFEEDL+NP +WYLDHN+LE M
Sbjct: 48 IVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESM 115
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A7S2XZZ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZZ4_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.070e-33 Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
V+HPLVLLS VDHYNRVAKD KKRVVGVLLG +GTVDVTNSFAVPFEEDLRNP IWYLDHNFLE M
Sbjct: 36 VIHPLVLLSAVDHYNRVAKDTKKRVVGVLLGQSTRGTVDVTNSFAVPFEEDLRNPAIWYLDHNFLENM 103
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A482SJ26_9ARCH (MPN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ26_9ARCH) HSP 1 Score: 117 bits (294), Expect = 6.230e-33 Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
VVHPLVLLS DHYNRVAKD KKRVVGVLLGS+ + VD+TNSFAVPFEEDL NP +W+LDHN+LE M
Sbjct: 20 VVHPLVLLSAADHYNRVAKDTKKRVVGVLLGSRTRNKVDITNSFAVPFEEDLNNPKVWFLDHNYLESM 87
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A812VEV3_SYMMI (RPN8A protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VEV3_SYMMI) HSP 1 Score: 119 bits (297), Expect = 1.520e-32 Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
+VHPLVLLS DHYNRVAKD KKRVVGVLLGS+++ VD+TNSFAVPFEED RNP++W+LDHNFLE M
Sbjct: 12 IVHPLVLLSAADHYNRVAKDTKKRVVGVLLGSRHRNEVDITNSFAVPFEEDPRNPSVWFLDHNFLEEM 79
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A1D2A8M2_AUXPR (MPN domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A8M2_AUXPR) HSP 1 Score: 122 bits (305), Expect = 3.460e-32 Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
V+HPLVLLS VDHYNRVAKD KKRVVGVLLG KYKG +D TNSFAVPFEED R+P+IW+LDHN+LE M
Sbjct: 10 VIHPLVLLSVVDHYNRVAKDTKKRVVGVLLGEKYKGRIDATNSFAVPFEEDERDPSIWFLDHNYLENM 77
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A7N0TH77_KALFE (MPN domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TH77_KALFE) HSP 1 Score: 117 bits (292), Expect = 4.670e-32 Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
+VHPLVLLS VDHYNRVA+D KKRV+GVLLGS +KGTVDVTN++AVPFEED ++P+IW+LDHNF E M
Sbjct: 18 IVHPLVLLSIVDHYNRVARDTKKRVIGVLLGSSFKGTVDVTNTYAVPFEEDDKDPSIWFLDHNFHEAM 85
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Match: A0A7S3NMR9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMR9_9STRA) HSP 1 Score: 122 bits (307), Expect = 5.180e-32 Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 2
Query: 2 VVHPLVLLSTVDHYNRVAKDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDLRNPNIWYLDHNFLEGM 205
VVHPLVLLSTVDHYNRVAKD KKRVVG+LLG++ + VDVTNSFAVPFEEDL+NP+IWYLDHN+LE M
Sbjct: 40 VVHPLVLLSTVDHYNRVAKDTKKRVVGILLGTRSRNVVDVTNSFAVPFEEDLKNPSIWYLDHNYLETM 107 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57834.16219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig57834.16219.1 >prot_Ecto-sp13_S_contig57834.16219.1 ID=prot_Ecto-sp13_S_contig57834.16219.1|Name=mRNA_Ecto-sp13_S_contig57834.16219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp GSAPVGTPFHGGSLQPGGKGREEAGRGGIAGVQVQGHRRRNKQLRCSVRGback to top mRNA from alignment at Ecto-sp13_S_contig57834:54..714- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig57834.16219.1 ID=mRNA_Ecto-sp13_S_contig57834.16219.1|Name=mRNA_Ecto-sp13_S_contig57834.16219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57834:54..714- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57834:54..714- >mRNA_Ecto-sp13_S_contig57834.16219.1 ID=mRNA_Ecto-sp13_S_contig57834.16219.1|Name=mRNA_Ecto-sp13_S_contig57834.16219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57834:54..714- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |