mRNA_Ecto-sp13_S_contig5783.16218.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5783.16218.1
Unique NamemRNA_Ecto-sp13_S_contig5783.16218.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5783.16218.1 vs. uniprot
Match: A0A6H5L1F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.230e-16
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = -1 
Query:    1 MAALVVDEAGGEPPVLPEDPPSPTWWPLEESLAARGR 111
            MAALVVDEAGGEPPVLPEDPPSPTWWPLEES  ARGR
Sbjct:    1 MAALVVDEAGGEPPVLPEDPPSPTWWPLEESFTARGR 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5783.16218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1F3_9PHAE5.230e-1694.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5783contigEcto-sp13_S_contig5783:8647..8850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_003780.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.6879103-CDS-Ecto-sp13_S_contig5783:8646..88501681463801.6879103-CDS-Ecto-sp13_S_contig5783:8646..8850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5783 8647..8850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5783.16218.1prot_Ecto-sp13_S_contig5783.16218.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5783 8647..8850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5783.16218.1

>prot_Ecto-sp13_S_contig5783.16218.1 ID=prot_Ecto-sp13_S_contig5783.16218.1|Name=mRNA_Ecto-sp13_S_contig5783.16218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
ASARGQRFLERPPRWRRRVFRENGWLTTGFVDYQGRHRRPCSLPEAARAR
GRAGKWCGWGAHVRLGG*
back to top

mRNA from alignment at Ecto-sp13_S_contig5783:8647..8850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5783.16218.1 ID=mRNA_Ecto-sp13_S_contig5783.16218.1|Name=mRNA_Ecto-sp13_S_contig5783.16218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5783:8647..8850- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCCGCGCGCGGCCAGAGATTCCTCGAGCGGCCACCACGTTGGAGACG
GCGGGTCTTCCGGGAGAACGGGTGGCTCACCACCGGCTTCGTCGACTACC
AGGGCCGCCATCGAAGGCCTTGTTCGCTGCCTGAAGCTGCTCGCGCCAGG
GGGCGGGCGGGGAAATGGTGTGGGTGGGGTGCGCATGTACGCTTGGGCGG
ATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5783:8647..8850-

>mRNA_Ecto-sp13_S_contig5783.16218.1 ID=mRNA_Ecto-sp13_S_contig5783.16218.1|Name=mRNA_Ecto-sp13_S_contig5783.16218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5783:8647..8850- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCCGCGCGCGGCCAGAGATTCCTCGAGCGGCCACCACGTTGGAGACG
GCGGGTCTTCCGGGAGAACGGGTGGCTCACCACCGGCTTCGTCGACTACC
AGGGCCGCCATCGAAGGCCTTGTTCGCTGCCTGAAGCTGCTCGCGCCAGG
GGGCGGGCGGGGAAATGGTGTGGGTGGGGTGCGCATGTACGCTTGGGCGG
ATAA
back to top