mRNA_Ecto-sp13_S_contig5781.16216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5781.16216.1
Unique NamemRNA_Ecto-sp13_S_contig5781.16216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: D8LIZ3_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ3_ECTSI)

HSP 1 Score: 526 bits (1355), Expect = 2.180e-173
Identity = 309/405 (76.30%), Postives = 321/405 (79.26%), Query Frame = 1 
Query:    1 QLLSLRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGATTAGRLPPNRQYDPGGKTASPQQHSRRSPLPGAAXXXXXXXXXGGKLLANGEGAGRVVVAPEGTVGGRDASGRHSGGSVGGVERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAWKKTGRWPPKVVA--------SSEGE----RRSQKPKFSAL----TITSGRHITPPL----KAIDKPSSGGQGERGNA---RTKDGANTPTRRPRPPVDAWGTPPASTSHRKGSPSSGATGSVSG 1146
            QLLSLRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGATT G LPPNRQ+DPGG+ ASPQ H+RRSPLPGAA         GGKLLANGEGAGRVVVAP+GTVGGRDA GRH GGSV GVERPSD SVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAA+EVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW     + P   +        +SEG         KPK  +         G H   P       + K +   Q E   A     KDGANTPTRRPRPPVDAWGTPP STS R+G  SS ATGSVSG
Sbjct:  488 QLLSLRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGATTGGGLPPNRQHDPGGENASPQHHNRRSPLPGAAAVGAATGASGGKLLANGEGAGRVVVAPKGTVGGRDAGGRHRGGSVSGVERPSDASVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAIEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW-----YEPLACSVEEEDGAVASEGNCALGEGGTKPKAQSFGGGDDKPRGAHHHAPQGHRQAVVGKTTRERQSEEPAAFDGSGKDGANTPTRRPRPPVDAWGTPPDSTSRRRGPLSSVATGSVSG 887
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A6H5KY72_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY72_9PHAE)

HSP 1 Score: 509 bits (1310), Expect = 3.910e-166
Identity = 316/420 (75.24%), Postives = 332/420 (79.05%), Query Frame = 1 
Query:    1 QLLSLRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGATTAGRLPPNRQYDPGGKTASPQQHSRRSPLPGAAXXXXXXXXXG-GKLLANGEGAGRVVVAPEGTVGGRDASGRHSGGSVGGVERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW---------KKTGRWPPKVVASS------EGERRSQKPKFSALTITSGRHITPPL----KAIDKPSSGGQGERGNA---RTKDGANTPTRRPRPPVDAWGTPPASTSHRKGSPSSGATGSVSGEVGGVSNSDSVPTSG 1191
            QLLSLRD+LRQRDNEIAILVNMLKQGKCHACA APSSATPGATT G LPPNR +DP G+T   QQHSRRSP PGA XXXXXXXXX  GKLLAN EGAGRVVVAP GTVGGRDASGRH  GSVGGVERPSD SVLG PQRAF YFRER+SGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRN RP+VGLGEEEDEEETKCKAA+EVEKRVY+GSFQELRELKSEIEHIQRLL+K RSKMQADFQAW         +K G      VAS       EGE++     F         H   P       + + +   Q E   A     KD ANTPTRRPRPPVDAWGTPPASTSHR+GSP S ATGSVSG  GG SNS+SVPTSG
Sbjct:  554 QLLSLRDSLRQRDNEIAILVNMLKQGKCHACAVAPSSATPGATTGGGLPPNRPHDPVGET---QQHSRRSPQPGAXXXXXXXXXXXXGKLLANSEGAGRVVVAPNGTVGGRDASGRHRSGSVGGVERPSDASVLGGPQRAFEYFRERYSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNDRPEVGLGEEEDEEETKCKAAIEVEKRVYQGSFQELRELKSEIEHIQRLLQKCRSKMQADFQAWYEPLACSVEEKDG-----AVASEGSHLLGEGEKKPTAQSFCGDDNPRTAHHPAPQGHRQAVVGRTTRERQCEESVAFDGSGKDEANTPTRRPRPPVDAWGTPPASTSHRRGSPISTATGSVSGGDGGASNSESVPTSG 965
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A7S3YAX2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAX2_HETAK)

HSP 1 Score: 132 bits (332), Expect = 3.760e-32
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 1 
Query:  379 PSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            P+D ++L D QRAF +F+ R+ G  A+EENK L+ EKY  AK +GE VN+AR+ I YLK+TIEQ+RRERA++G+M          D++D    P        D EE + KA ++ EK++YK SF  L+ LK+EIEHIQRLL++G  K+QADF  W
Sbjct:    3 PADRALLADAQRAFEHFKGRYPGLRAMEENKSLMKEKYVEAKKLGELVNKARNKINYLKSTIEQIRRERAIEGVM----------DNKDGEEEPLPA-----DPEEERMKAEVDEEKQIYKNSFAALKALKAEIEHIQRLLQRGSKKLQADFDTW 142
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: F0Y7U3_AURAN (Kinesin-like protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7U3_AURAN)

HSP 1 Score: 122 bits (305), Expect = 1.730e-25
Identity = 105/278 (37.77%), Postives = 137/278 (49.28%), Query Frame = 1 
Query:   10 SLRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGATTAGRLPPNRQYDPGGKTASPQQHSRRSPLPGAAXXXXXXXXXGGKLLANGEGAGRVVVAPEGTVGGRDASGRHSGGSVGGVERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            +L+  L++RDNEIAILVNM++Q K       P        T+   PP    D     A P++  RR P                ++LA      RV       VGG D S          +       +  DPQ+A+ YFRER     A+E+NK +L  KY  AK  GERVN +R +I YLK TIEQ+RRERA++G+          GD                 E       A+EVEKRVYK SF++LR LK EIEHIQR+LE GR+++Q+DF  W
Sbjct:  313 ALQRTLKERDNEIAILVNMVRQAK----GGGPLPTLGKDQTSPGKPPAPSPDAKPDRAGPRE--RRDPR---------------EVLAEKRRQMRVS-----DVGGVDFS----------LPPKEAAGIRDDPQKAYAYFRERCRTNGAIEDNKAVLKAKYGEAKMYGERVNSSRKSIAYLKQTIEQLRRERAMEGVS---------GDXXXXXXXXXXXXXXXXXE-------AIEVEKRVYKESFEKLRGLKGEIEHIQRMLETGRARLQSDFDKW 538
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A835YZS4_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.810e-24
Identity = 107/282 (37.94%), Postives = 127/282 (45.04%), Query Frame = 1 
Query:   13 LRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGATTAGRLPPNRQYDPGGKTASPQQHSRRSPLPGAAXXXXXXXXXGGKLLANGEGAGRVVVAPEGTVGGRDASGRHSGGSVGG-----VERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            L+ AL++RD EIAILVNM+KQGK                     PP       G  A+  Q   +                         GA     A  G  GG+   G              V  PSD  VL  PQ+AF YFR+R+    A+EENK LL +KY  AK++G RVNQARSTI YLKNTIEQ+RRERA++GLM             DR                               G FQELRELK+EIE IQ+LLEK R KMQ+DF  W
Sbjct:  471 LQKALQERDAEIAILVNMVKQGKA--------------------PPRA-----GTAAAASQAEAKG------------------------GAPAWEQAKAGANGGQKRQGXXXXXXXXXXXPPIVLYPSDRHVLDQPQQAFAYFRQRYPPGAAIEENKALLQKKYTTAKSVGARVNQARSTITYLKNTIEQIRRERAMEGLM-------------DREEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-FQELRELKAEIERIQQLLEKARLKMQSDFDTW 689
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A7S4EA65_9STRA (Kinesin-like protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EA65_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.110e-22
Identity = 93/282 (32.98%), Postives = 135/282 (47.87%), Query Frame = 1 
Query:   13 LRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGA-----TTAGRLPPNRQYDPGGKTASPQQHSRRSPLPGAAXXXXXXXXXGGKLLANGEGAGRVVVAPEGTVGGRDASGRHSGGSVGGVERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            L+  L++RDNEIAILVNM++Q +    A  PS A+        ++  +  P R+ DP  + A  +   +   LP                    E AG  +                            D  V  DP+RA+ YFRE+      LE+NK++L EKY  AKA GE+VN  R  I YLK +IE +RRERA++G++ E  +                   ++ D EE +   A+  EK VYK +F+ LR LK+EIEH+Q++LE GR K+Q ++  W
Sbjct:  468 LKATLKERDNEIAILVNMVRQARGGGTAPTPSIASEAKEFSPPSSEKKAEPVRRLDPREQLAEDRARMKHR-LPD-------------------EVAGVSIYV-------------------------DDAEVRDDPKRAWLYFREKCRIAHVLEDNKRVLKEKYCEAKACGEKVNATRKAIAYLKQSIEAIRRERAIEGVVNEDDL-------------------QKADPEEQRKIDAIAQEKEVYKQNFESLRRLKTEIEHVQKMLESGRKKLQKEYDEW 685
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A7S0QPQ2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPQ2_9CRYP)

HSP 1 Score: 97.8 bits (242), Expect = 2.170e-20
Identity = 65/149 (43.62%), Postives = 85/149 (57.05%), Query Frame = 1 
Query:  397 LGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            L D  RAF  FR  +    A+E NK +L  KY  AK++GE VNQ R  I  LK  +EQ+R ERA+ GL+E                    G  + E EEE + KA+++  K +YK  F  LRELKSEIE IQ ++EK RS++Q DF+AW
Sbjct:    1 LRDRGRAFEVFRGSYHRNEAIESNKAVLKSKYDEAKSVGEGVNQHRGEIARLKAHVEQLRAERAMQGLVE--------------------GQDDAETEEEQQAKASIDQHKALYKDKFNRLRELKSEIEQIQAIMEKQRSQLQKDFEAW 129
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A7S0SUF2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SUF2_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 2.500e-20
Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  379 PSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            P   ++L D  +AF +FR  +    A+EENK LL EKY RAKA+GERVN +R+ I  LK TIEQ R  ++L    EEG              RP      EE+    + K A++ EK  Y+ +F ELR+LK EIEH+Q LLE+ R ++Q DF+ W
Sbjct:   26 PDIMALLADRNKAFEHFRRSYRRNEAIEENKALLKEKYGRAKALGERVNASRAAINQLKATIEQRRVAQSL--AEEEG--------------RPVDTFAAEEE----RAKLAIDREKTDYRDAFNELRDLKKEIEHLQMLLEQSRKRLQTDFEQW 160
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BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A7S2KYN0_9STRA (Kinesin-like protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYN0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.920e-18
Identity = 65/160 (40.62%), Postives = 93/160 (58.13%), Query Frame = 1 
Query:  367 GVERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNS-RPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            GVER  D+++L  PQ A+ +F++R+ G   +EENK +L  KY  AK  G+R+  A++ I  +K TIE+ RR RA+D L   G V     +DE   S  P          +E   + A+E EK  YK +F  LRELK+ IEH+ +L+EK + KMQ +F  W
Sbjct:  544 GVERCIDSNILDVPQLAYNWFQKRYQGCKGMEENKLVLKAKYDEAKESGKRITNAKANIAQVKETIERGRRTRAVDALQNPGKVN----EDESLQSIHP----------DEIPLREAIEREKETYKTNFNRLRELKATIEHLHKLMEKNKQKMQHEFDIW 689
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Match: A0A7S0WNN5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WNN5_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 3.350e-18
Identity = 96/283 (33.92%), Postives = 134/283 (47.35%), Query Frame = 1 
Query:   13 LRDALRQRDNEIAILVNMLKQGKCHACAAAPSSATPGA----TTAGRLPPNRQYDPGGKTASPQQHSRRSPLPGAAXXXXXXXXXGGKLLANGEGAGRVVVAPEGTVGGRDASGRHSGGSVG--GVERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMGERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQVGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGRSKMQADFQAW 843
            LR  + QRDNEI ILV MLK+    A A  P++A PG     TT+G L     +      A         P PGA        X G  +   G  +  V  + + + GGR +             V +  D S+L D  +AF  FR+ +     +EENK LL +KY  AK +G  VN A+  I  LK  IEQ R +R++ G+              D ++  Q G  ++ED EE +CK  +E EK  Y+ +F  LR  K EIEH+  LLE+ R ++  DF+ W
Sbjct:   19 LRLQVAQRDNEINILVGMLKRRDAAAAAGGPAAAAPGLGSSLTTSGGLGAAAGF------AGVLGSGPGRPPPGAPGAVGGATXMGXGVSPMGGAS--VSSSFDASAGGRGSGXXXXXXXXXXDAVSQLLDASMLADRTKAFELFRKSYRQNEVIEENKALLKQKYDAAKELGAAVNDAKGRIGELKALIEQRRIQRSVAGIA-------------DPSAAQQDGA-QQEDPEEERCKVLIEREKERYQAAFDGLRGAKREIEHLHMLLEQSRVRLARDFEQW 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5781.16216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ3_ECTSI2.180e-17376.30Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KY72_9PHAE3.910e-16675.24Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A7S3YAX2_HETAK3.760e-3249.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y7U3_AURAN1.730e-2537.77Kinesin-like protein n=1 Tax=Aureococcus anophagef... [more]
A0A835YZS4_9STRA1.810e-2437.94Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S4EA65_9STRA1.110e-2232.98Kinesin-like protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S0QPQ2_9CRYP2.170e-2043.62Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0SUF2_9CHLO2.500e-2043.23Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2KYN0_9STRA2.920e-1840.63Kinesin-like protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0WNN5_9CHLO3.350e-1833.92Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5781contigEcto-sp13_S_contig5781:2396..8071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score495.4
Seed ortholog evalue2.8e-137
Seed eggNOG ortholog2880.D8LIZ3
Preferred nameKIF6
Model size1819
KEGG koko:K10397
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Exons10
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-20_002100.1
Cds size1293
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5781.16216.1prot_Ecto-sp13_S_contig5781.16216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5781 2939..8008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.4646857-UTR-Ecto-sp13_S_contig5781:2395..26511681463801.4646857-UTR-Ecto-sp13_S_contig5781:2395..2651Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5781 2396..2651 -
1681463801.4760523-UTR-Ecto-sp13_S_contig5781:2731..29381681463801.4760523-UTR-Ecto-sp13_S_contig5781:2731..2938Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5781 2732..2938 -
1681463801.594065-UTR-Ecto-sp13_S_contig5781:8008..80711681463801.594065-UTR-Ecto-sp13_S_contig5781:8008..8071Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5781 8009..8071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.4855633-CDS-Ecto-sp13_S_contig5781:2938..30391681463801.4855633-CDS-Ecto-sp13_S_contig5781:2938..3039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 2939..3039 -
1681463801.4988775-CDS-Ecto-sp13_S_contig5781:3665..39021681463801.4988775-CDS-Ecto-sp13_S_contig5781:3665..3902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 3666..3902 -
1681463801.5097418-CDS-Ecto-sp13_S_contig5781:3925..41011681463801.5097418-CDS-Ecto-sp13_S_contig5781:3925..4101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 3926..4101 -
1681463801.5189898-CDS-Ecto-sp13_S_contig5781:4129..41591681463801.5189898-CDS-Ecto-sp13_S_contig5781:4129..4159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 4130..4159 -
1681463801.5285993-CDS-Ecto-sp13_S_contig5781:4714..47731681463801.5285993-CDS-Ecto-sp13_S_contig5781:4714..4773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 4715..4773 -
1681463801.5390594-CDS-Ecto-sp13_S_contig5781:5040..52231681463801.5390594-CDS-Ecto-sp13_S_contig5781:5040..5223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 5041..5223 -
1681463801.5500362-CDS-Ecto-sp13_S_contig5781:6096..61621681463801.5500362-CDS-Ecto-sp13_S_contig5781:6096..6162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 6097..6162 -
1681463801.5696604-CDS-Ecto-sp13_S_contig5781:6773..72021681463801.5696604-CDS-Ecto-sp13_S_contig5781:6773..7202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 6774..7202 -
1681463801.5822659-CDS-Ecto-sp13_S_contig5781:7996..80081681463801.5822659-CDS-Ecto-sp13_S_contig5781:7996..8008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5781 7997..8008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5781.16216.1

>prot_Ecto-sp13_S_contig5781.16216.1 ID=prot_Ecto-sp13_S_contig5781.16216.1|Name=mRNA_Ecto-sp13_S_contig5781.16216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp
MLKQGKCHACAAAPSSATPGATTAGRLPPNRQYDPGGKTASPQQHSRRSP
LPGAAAAGAAAAASGGKLLANGEGAGRVVVAPEGTVGGRDASGRHSGGSV
GGVERPSDTSVLGDPQRAFGYFRERHSGRVALEENKKLLGEKYARAKAMG
ERVNQARSTIQYLKNTIEQVRRERALDGLMEEGSVGGSKGDDEDRNSRPQ
VGLGEEEDEEETKCKAAMEVEKRVYKGSFQELRELKSEIEHIQRLLEKGR
SKMQADFQAWKKTGRWPPKVVASSEGERRSQKPKFSALTITSGRHITPPL
KAIDKPSSGGQGERGNARTKDGANTPTRRPRPPVDAWGTPPASTSHRKGS
PSSGATGSVSGEVGGVSNSDSVPTSGGGGRGAWHGGAGGGGLLPPLTGNK
EADDDIAAFYRAKEELERRKSAAGRNSGGR*
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mRNA from alignment at Ecto-sp13_S_contig5781:2396..8071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5781.16216.1 ID=mRNA_Ecto-sp13_S_contig5781.16216.1|Name=mRNA_Ecto-sp13_S_contig5781.16216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5676bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5781:2396..8071- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGCTCTCGCTCCGAGACGCCCTGCGGCAGAGGGACAACGAAATTGC
AATCCTCGTCAACATGCTCAAGCAGGTGCGTTCGGGAGACGGTACACGTT
TTTGGCAAAGCCTTCAATGGTTCTTTTCCGTAGAGCTTCTGCGGCCTCAC
CAACGTTCTCACGGGTGGAAGGCATTCGGATCAGAGGGTAAACTCTTTTT
TCCCTTTGAACTTTCGCGAGGATACTTGTAGGTTCTCCACGCGTGATGGG
TTTCGTTCTCCACTCTTCTGTTCCTGGTGATGTTGGGCTAGGCTTGTTGT
TCGGTCAGTCACGCTGTTGTTTATCACTCTGTTGGTCCCTTCGGGAAGAG
AGACCACTAACTGTTTTAATGGCAGCTGATAATCCAACACTTCCCGTCAC
AAATGCGGCGTCTTGCATTGGTATTTTCATTCCTCCCTTCTCTATACGAG
AATTACGGTTTTATGTCAAAATCTGTTCACCAAGCATGAGAACATCGGGC
AATATCCTACGAAAGTCATTTTGGCTGTCCCATACCTCTTTGATGGAGCA
CGAATACCAAGCCGCAGGTTTTTTTTGCCGTATTCACGGCCTCTCGTAGG
AACGCCAAACGTCAGCGAACCAGTTATCAAGCAAGTGATCCATGTTCGTG
AGAAAACTAACAATTGGAATAGTCAATCTCCTCGAGTTGTAGGCGGGGAG
GCAGCGCTGGAAAATCTCCTCGGAACGCTTGCATAATTGCAAGTGCTTAC
GATTTCGCATAACGCTAGAGGGGTCCAGAGTCTCCGGAACAAGGGCAGAC
CGACCACACAACCCCCGCCCATAACCCACCCCCCCCCCCCCCTCCGATCG
CGCCCGTCCAACATCCAAGGGGAAATGCCATGCATGCGCAGCAGCCCCCT
CCTCAGCGACACCAGGAGCAACGACAGCAGGAAGGCTGCCACCAAACCGG
CAGTACGACCCGGGAGGGAAGACCGCATCGCCTCAGCAACACAGTCGGCG
GAGCCCCCTGCCGGGAGCCGCAGCTGCAGGCGCCGCCGCCGCCGCTAGTG
GGGGGAAGTTGTTGGCCAACGGCGAGGGGGCAGGTCGGGTGGTAGTCGCG
CCGGAGGGGACGGTTGGAGGACGAGACGCTAGTGGACGGCATAGTGGTGG
TAGCGTCGGTGGAGTGGAACGCCCGAGCGACACCAGCGTGCTTGGAGACC
CCCAGAGGGCGTTCGGGTACTTCAGGGAGAGGCACTCGGGTAGGGTCGCC
CTGGAGGAGAACAAGAAGCTTCTGGGGGAGAAGTACGCCAGGGCGAAGGT
TCGCTTTCACATCTCGTTTCTGTGGCGGCGACTTCATTTCTATAGCACTA
GCGGACCAGTTCGGTTTCGAATGCATCACGACAGTACGACAACAACATAC
GCATTGATGAGGCTAGTGAGTGGTTGGGTGTGTACGGTGGGGAATGTTCT
CGAGCGAAGATCACTACCCGTGTCTTTCCCACAAGGAGCAAGAAAGGCAG
CGTTTTGGTGTGACACCTGGCGGATTTTGGCAGAAAGAAGCATAGAAATT
TCTCAAGGCACACTAGAATGACTGACTGACTAAGAGAGGGAAAGCGAGAG
GAGAGAAACGTATGTCAGTTTCACGTCGGTTAAAGATGCTGACTGAGCGA
AGGCAAGGGTGGGCTTGCTCGTCAAATCCGTTTCTCTCCTTGGGCCCCAC
CACAGGTGGCGTTCTGACAGGGGTCGGGGAAAGAATACGCCCTCTTTCCA
CCGCGCCGAACTTCGTGCTCATTGCAAACCTTGACACCACCCCCAAAGGT
CGAGTTACTTGATTCACTCACAATTCCGCTTGATCTTACACTGCACGCCC
TTTATGTGTGGTGATATTTTCCGATGTATTTTTGCTGGGTGCCGGCGGTT
ACGCTGCAGGCCATGGGTGAGCGAGTCAACCAGGCCCGAAGCACTATCCA
GTACCTGAAAAACACTATCGAACAGGTGAGAACCCAAAACAACCGACGAT
TCGAGATGAAGTACCCTGGATATTTTTGTCGTGGTGTGCTTCAACCAAAA
GTTTCTCCAACAACATAAACGTTCCCACGTCAAATGATAGGTGACAGTCC
GGTCTGCTGTTTGCAGCACGGGAGTCCCTTCCGGAATTTTAACATCGGAA
GCATCTTAGAAGGCTGCGTGAATGCAAAAGGGCAATATGGTTGGAATACT
CGATGTCAACCATTAGACCTGCGAATGGAGGGCATTAGATGTCCGTCGCA
GTACATTCTCTAGGAAACAAGACCATTTTTGTACTCTTGGCACGTACTTG
GCCTTGCGTGAGCCGAAGCATGCTTCATGGTAAAGATTACTTGACCTTGT
CGTGAACCGACGCATGCTTCATGGTAAAGAAACCCGCCAATCCTTGTTTG
TGAAGGCCACGTAATGAGGAGTCGTGTGCCGCAACACGTCGAGAGACGCG
TCTTGCAAACGTACGAAACTGGTCACTCTGGGTGAGCTTGCTACGTCCAC
AAACTTGCCGGTGAAAGTTTTCAAGGGGGCGACGCAAAACCTCCTATAGT
CCACCCTACACCCCCGTTACACTTTCCACTACCTCAAGCACACCACACAC
CCGAAAATCGATACCACGCCTCCTTGGGTTGGGGATCCAATAAGCCACTG
ACATGATAAAGACTGTGTTCACTGGGTGCCAACGTCTTTTCCCGCTATGG
AATCCTTACTGATGCTTTCGACGTCTACACCCGGGGTAAGGTCACACCCG
TCATACTATCAACTTTTCTGCACCTCCTGACTACTCACACCCCCTCTTCC
GCAAACCAATGACGACCACACCACCCCAAAATGATTACGGTTGCTCAGGT
CCGACGAGAGCGAGCCCTGGACGGCCTTATGGAAGAGGGGAGTGTGGGTG
GTAGCAAAGGGGACGACGAAGATAGAAATAGCCGGCCGCAGGTAGGCTTG
GGCGAGGAGGAAGATGAAGAAGAAACCAAGTGCAAAGCGGCGATGGAGGT
CGAGAAAAGGGTCTACAAGGGAAGCTTCCAGGTATATTCCAACACGTCTT
CCGGGGGGCACAGATGCTGCCAAGCAAGAGGTGCCCCCAGATAGGACCAC
CAGACTCCGTCGACACCTGACCTTGGCGTGACTTCCGTAGCGTTGGTGCG
TAAAGCACGTATTTCCAAATGGCTGGGAGGTTTCCCGCCCCTGTTTTATT
TTGTGTAGAAGTGCGGCACGATACCAACCCGGATTTTCCCTCGCACTCCT
TATCTTTCTCCCATCCGCCCGTTTCGTTAACTCGATGTCACCACATAGGA
ACTGAGGGAGCTCAAATCCGAGATAGAGCATATTCAACGTCTGCTAGAAA
AGGGCCGGTAAGTGCGAGAAGGCAAGGAGAAACAAACATCGTTATGTTGT
GTGATTCGCTTTCGCAACCAGTAGCAGCTGGTTTGTGGATGACGTGGTCC
AATTTCGCTCTCCAGGTGCTTGAGGGGTGATCCATGTATTTCGACGTTAA
AACGTATGGGCTGAGGTGTCACATAATTCCTCTTTTCTCCTTTAACTGGC
CTAGACTATCACTTTGACGCGCCTACCCACTGTATGGCATTTCGCCTGCC
CTATTGAAGACCTGCGATCCAGGGTCACACGGAAGAAGTTCTCTGCGGTA
AAGGCTCCAAGCTTACCGCTACAACAGTTCCAACAAAAACTGTACTGCAC
ACACGGGTACCTTCTGTCCGAAAATATAACTTTCGAAATCCCGCTCTACA
ACGCCAACGCGCGTCATATCATCCACCCCATCTCGTCGTATGAGTATCCG
ACTCGTCCCCCATCGTGTAGATTTCCCCCCCCCATGGACGACAGCCTTTT
GACTTGTCGTCATATTGACTCGCCATATCTCCACCCCTTTGCTTGGTCAC
TCTCGTTCATAGATCAAAAATGCAAGCAGATTTCCAGGCATGGTATGAGC
CTTTGGCTTGCTCTGTCGAGGAAGAAAACGGGGCGGTGGCCTCCGAAGGT
AGTCGCCTCCTCGGAGGGGGAGAGACGAAGCCAAAAGCCCAAATTTTCGG
CGCTGACGATAACCTCCGGGCGGCACATCACGCCGCCCCTCAAGGCCATA
GACAAGCCGTCGTCGGGAGGACAAGGAGAGAGAGGCAATGCGAGGAGTCA
GCGGCCTTTGACGGGAGAGCGAAGGATGGGGCCAACACCCCCACGAGAAG
GCCGCGGCCTCCGGTGGACGCCTGGGGAACGCCCCCGGCCTCTACCAGCC
ATCGGAAGGGCTCTCCGTCTTCCGGGGCAACCGGGAGCGTTTCGGGCGAA
GTTGGTGGTGTTAGCAACAGCGATTCTGTCCCGACGAGTGGCGGTGGTGG
TAGAGGAGCATGGCATGGCGGCGCGGGAGGAGGAGGACTGCTCCCACCAC
TTACTGGTGAGTTGGCGAAACCCACGGCAAGGGAAGCGTGTTCGCAACTT
GTGTGAGGGCATGAACAAACCTGGCATGTTCATGCATTGGGCGAATAGCT
GGTGCGAAAACGATGCCGTCAATTTCGCCCTGTAGACCAGACGCACTTTC
CCGGCATTCCTGACTTGGACGTGCTAGAATAGAAAAGCAGTACCAGCCAC
AAAGATGACAACAACCTTCTAAGTACCACCAACCCTTCTTGCGCTTTAGA
TAAGTTTTGTCCACGTATTTCAACCCACTTCTACTGTACATCCCCACGAC
GCGAAGCAGTGGTTGACGCGCGACGGGCCTGTTGACTCGACTGCTGGTTT
CCTTGGCGGCTTCGGGCCTCATGTCAAATGTATGACTGATCCACGATACC
TCATGGGTCGATCGCCGCCAGAAAGGATACTATCTCTTCTCTTTGGGTAA
AAGTGACCCCTGTCACAGTTGTCTAGAACTCTCCACCCTGTACAATCTTC
AACTATCCCGAACACGCCGAACTCATATGTTTAACATCAAAGAACCCAAA
TGGTGCCTTCACCTGCATTGCGCATTCAATTGAACGAGATTTCTCTTTCT
TCTTCTTGCCGACCGTGATTCTTTACTCTCAGGGAATAAAGAGGCCGACG
ATGACATCGCTGCCTTCTATCGCGCCAAAGAGGAGTTAGAGCGCAGAAAG
AGCGCTGCCGGTAGAAATAGCGGAGGGAGATGACATTTTGGTAGTTTCGT
TGGGTATGCCGCTCCGAAGGCTGAGTTCTCATACCCTAAAACTCTTTCAC
TCGATGATTCAGTGTAAGAGGAGCATGATCGCGTCGAGGTGTCGATGGTG
CTTTGGCCGAGCGGTGCTTGTGCAGTTTTTTCAATGATGCTTTTGGTTTT
TCGGGGAGTGGCGTCGGACCTCCGTTTGGCAGTCATCCACGTAAAACGTG
CAGAGCTCACATTGTGTTAGTTATGGTACATATTATATCTGACACGTGCA
CTGAATACTGTTGTGCGGAGTGGGGATGTAGTGAGTTTCTGCGTCAGCGC
TGGTTGCATGTTGCTGACAACCGTATCCGTCCGTCTTGAGGGTCTGTGTT
GAACGGCAACCGCCGTTGTCGCGTCTGTTCATCTGCTGTTCGTTGCTTAG
GATTTATTACCACTGGCCTGCCGTCCCTTGCCTGAATTGGCGTCATTTAT
CGTCCTACGCATGCGTGCAGTCGCGGTTGTTGCTTTTGAAGTGGATTCTA
TTGTCGCATTCGCCGCTTCCAAGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5781:2396..8071-

>mRNA_Ecto-sp13_S_contig5781.16216.1 ID=mRNA_Ecto-sp13_S_contig5781.16216.1|Name=mRNA_Ecto-sp13_S_contig5781.16216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5781:2396..8071- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAAGCAGGGGAAATGCCATGCATGCGCAGCAGCCCCCTCCTCAGC
GACACCAGGAGCAACGACAGCAGGAAGGCTGCCACCAAACCGGCAGTACG
ACCCGGGAGGGAAGACCGCATCGCCTCAGCAACACAGTCGGCGGAGCCCC
CTGCCGGGAGCCGCAGCTGCAGGCGCCGCCGCCGCCGCTAGTGGGGGGAA
GTTGTTGGCCAACGGCGAGGGGGCAGGTCGGGTGGTAGTCGCGCCGGAGG
GGACGGTTGGAGGACGAGACGCTAGTGGACGGCATAGTGGTGGTAGCGTC
GGTGGAGTGGAACGCCCGAGCGACACCAGCGTGCTTGGAGACCCCCAGAG
GGCGTTCGGGTACTTCAGGGAGAGGCACTCGGGTAGGGTCGCCCTGGAGG
AGAACAAGAAGCTTCTGGGGGAGAAGTACGCCAGGGCGAAGGCCATGGGT
GAGCGAGTCAACCAGGCCCGAAGCACTATCCAGTACCTGAAAAACACTAT
CGAACAGGTCCGACGAGAGCGAGCCCTGGACGGCCTTATGGAAGAGGGGA
GTGTGGGTGGTAGCAAAGGGGACGACGAAGATAGAAATAGCCGGCCGCAG
GTAGGCTTGGGCGAGGAGGAAGATGAAGAAGAAACCAAGTGCAAAGCGGC
GATGGAGGTCGAGAAAAGGGTCTACAAGGGAAGCTTCCAGGAACTGAGGG
AGCTCAAATCCGAGATAGAGCATATTCAACGTCTGCTAGAAAAGGGCCGA
TCAAAAATGCAAGCAGATTTCCAGGCATGGAAGAAAACGGGGCGGTGGCC
TCCGAAGGTAGTCGCCTCCTCGGAGGGGGAGAGACGAAGCCAAAAGCCCA
AATTTTCGGCGCTGACGATAACCTCCGGGCGGCACATCACGCCGCCCCTC
AAGGCCATAGACAAGCCGTCGTCGGGAGGACAAGGAGAGAGAGGCAATGC
GAGGACGAAGGATGGGGCCAACACCCCCACGAGAAGGCCGCGGCCTCCGG
TGGACGCCTGGGGAACGCCCCCGGCCTCTACCAGCCATCGGAAGGGCTCT
CCGTCTTCCGGGGCAACCGGGAGCGTTTCGGGCGAAGTTGGTGGTGTTAG
CAACAGCGATTCTGTCCCGACGAGTGGCGGTGGTGGTAGAGGAGCATGGC
ATGGCGGCGCGGGAGGAGGAGGACTGCTCCCACCACTTACTGGGAATAAA
GAGGCCGACGATGACATCGCTGCCTTCTATCGCGCCAAAGAGGAGTTAGA
GCGCAGAAAGAGCGCTGCCGGTAGAAATAGCGGAGGGAGATGA
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