mRNA_Ecto-sp13_S_contig578.16213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig578.16213.1
Unique NamemRNA_Ecto-sp13_S_contig578.16213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig578.16213.1 vs. uniprot
Match: A0A6H5KEX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX8_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 6.330e-121
Identity = 189/203 (93.10%), Postives = 193/203 (95.07%), Query Frame = 1 
Query:    1 MLGSRLAFASAAVKWSHLPVSTPPPSTRRLLTMRAGPDVVCLDCTGTIMRIKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLLDSFRASLKRRSKELPCFGTGVMSSEDWWAEVVMATFRGAGVSDETLGISREGGRGXXXXXXXXXXXXXXXVFDDVFDRLFHDVFTSTTAWELVPGAEKVLEDLRAWVGEDGGPRALGAV 609
            MLGSRLA AS+AVKWSHLPV TPPPSTRRLLTMRAGPDVVCLDCTGTIMRIKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLL+SFRASLKRRSKELPCFGTGVMSSEDWWAEVVMATFRGAGVSDETLGIS+EG RG  XXXXXXXXX    VFDDVFDRLFHDVFTSTTAWELVPGAE+VLEDLRAWVGE GGPRALGAV
Sbjct:    1 MLGSRLASASSAVKWSHLPVITPPPSTRRLLTMRAGPDVVCLDCTGTIMRIKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLLNSFRASLKRRSKELPCFGTGVMSSEDWWAEVVMATFRGAGVSDETLGISQEGDRGGGXXXXXXXXXGR--VFDDVFDRLFHDVFTSTTAWELVPGAEEVLEDLRAWVGEAGGPRALGAV 201
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BLAST of mRNA_Ecto-sp13_S_contig578.16213.1 vs. uniprot
Match: A0A7R9U3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3B9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.130e-8
Identity = 51/184 (27.72%), Postives = 82/184 (44.57%), Query Frame = 1 
Query:   94 TMRAGPDVVCLDCTGTIMRIKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLLDSFRASLKRRSKELPCFGTGV-MSSEDWWAEVVMAT----FRGAGVSDETLGISREGGRGXXXXXXXXXXXXXXXVFDDVFDRLFHDVFTSTTA-------WELVPGAEKVLEDLRAWVGEDGGPRALGAV 609
            T +  P ++  D TGT+M+++  +  +Y   L +         PD  S      +F+ +   + K +PCFG G  ++S DWW  V+  T    F   GV+DE   ++  GG                   ++V + LF D++ +  A       WEL PG E VL++LR+   E  G   LG +
Sbjct:  273 TAKPRPKLITFDATGTLMQLRSHIGVIYRDTLLEHATTLRLPRPDVFSI-----AFKEAYASQCKAMPCFGCGSGIASFDWWRPVMQGTYDSVFSSFGVTDEE--VAEAGGMESK---------------EEVMEMLFQDLYFNIFAKGPPEGMWELRPGVEAVLQNLRS--AESCGGLRLGVL 432
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BLAST of mRNA_Ecto-sp13_S_contig578.16213.1 vs. uniprot
Match: UPI001EE526F1 (haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE526F1)

HSP 1 Score: 57.4 bits (137), Expect = 2.040e-6
Identity = 46/158 (29.11%), Postives = 76/158 (48.10%), Query Frame = 1 
Query:  115 VVCLDCTGTIMRIKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLLDSFRASLKRRSKELPCFGTGV-MSSEDWWAEVVMATFRG---AGVSDETLGISREGGRGXXXXXXXXXXXXXXXVFDDVFDRLFHDV---FTSTTAWELVPGAEKVLEDLRA 567
            +V LD T T+++I GS    Y  V     G+   G+  KVS  D+  SF+   ++ S+  P FGT V MSS  WW ++V   F+    A V+ + L  + +                     D+   ++ + +   F++  AWE++PGAE +L+ L+A
Sbjct:   20 LVTLDVTNTLLKITGSPGHQYAAVA----GIY--GVKAKVS--DINTSFKYRYRQYSERYPNFGTAVGMSSYKWWTDLVKDCFKSVADANVNSQVLPATNQ---------------------DETLTQIANHLYLHFSTAKAWEILPGAEALLQSLKA 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig578.16213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KEX8_9PHAE6.330e-12193.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9U3B9_9STRA9.130e-827.72Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI001EE526F12.040e-629.11haloacid dehalogenase-like hydrolase domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig578contigEcto-sp13_S_contig578:19889..23699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score367.1
Seed ortholog evalue5.5e-99
Seed eggNOG ortholog2880.D8LT61
Preferred nameHDHD3
Model size618
KEGG koko:K07025,ko:K11853
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237
Exons3
EggNOG free text desc.N-acylneuraminate-9-phosphatase activity
EggNOG OGsCOG1011@1,KOG3085@2759
EC3.4.19.12
Cds size618
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.2873156-CDS-Ecto-sp13_S_contig578:19888..200581681463801.2873156-CDS-Ecto-sp13_S_contig578:19888..20058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig578 19889..20058 +
1681463801.2989419-CDS-Ecto-sp13_S_contig578:22732..230961681463801.2989419-CDS-Ecto-sp13_S_contig578:22732..23096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig578 22733..23096 +
1681463801.3095841-CDS-Ecto-sp13_S_contig578:23615..236991681463801.3095841-CDS-Ecto-sp13_S_contig578:23615..23699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig578 23616..23699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig578.16213.1prot_Ecto-sp13_S_contig578.16213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig578 19889..23699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig578.16213.1

>prot_Ecto-sp13_S_contig578.16213.1 ID=prot_Ecto-sp13_S_contig578.16213.1|Name=mRNA_Ecto-sp13_S_contig578.16213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
MLGSRLAFASAAVKWSHLPVSTPPPSTRRLLTMRAGPDVVCLDCTGTIMR
IKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLLDSFRASLKRRSKELPC
FGTGVMSSEDWWAEVVMATFRGAGVSDETLGISREGGRGGDGGGGGGGGA
RGGRVFDDVFDRLFHDVFTSTTAWELVPGAEKVLEDLRAWVGEDGGPRAL
GAVRM*
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mRNA from alignment at Ecto-sp13_S_contig578:19889..23699+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig578.16213.1 ID=mRNA_Ecto-sp13_S_contig578.16213.1|Name=mRNA_Ecto-sp13_S_contig578.16213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3811bp|location=Sequence derived from alignment at Ecto-sp13_S_contig578:19889..23699+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGGTTCTCGCCTAGCGTTCGCGTCTGCAGCTGTAAAATGGTCCCA
TCTGCCCGTTAGCACCCCGCCGCCTTCAACCAGGCGACTTCTGACGATGC
GCGCAGGCCCGGACGTGGTATGTCTAGATTGCACGGGCACCATCATGCGG
ATAAAGGGCTCGATGCCGAGGTGCGTGACAGCGCTGTCCACAATGAATCA
CGCATGAATTTGCTCGCCGATCCCCGAACCAATTTTCAAAATTTCACACG
TCTTCGTCTTCCGAACAAGCCCCTCGTGTATGTTCCAACTGGTCTTCCTG
TGATAATGCGCAACGTGCTGTCTTGTGTATGTACGACAGTAGACAGCTGT
ACTACGACATCGCCCACTGTCTTGACCTACAACAGACTACACCTGTACAG
TCGTGGTCCCAGTAAATGCCGGTCGAATAATGCCGGTTGCATTATAATGC
CGGTTGCCCGGTATAATGCCGGTGAAATCGCTCGTGAAATCGGCTGGACC
GCACGAATTCGGTACTGCCGGTAAGGCGAAGGCATACAGGCACTATACAG
TAGAGGCACTATAATACCGGCTCAGGGGTCCTCTTGTCCGTGAATTATGC
CGGTTCTCAAGAAAAACCTTTGCTCACGTACTCAGCGCACACACAACACA
CACCATTTCGGGCCTACCAGCTGTACCCCTATGCTCCGCGCCATCAGCAG
GGGCACATCATGCCTTGTGCAGCGGGCAGGATGTTCACGACGCCAGGCTC
CACGCCAAAACCCTCTGACGGTCCCCCTACATGCCTAACCCTAACCCTAT
GCCAGCCTGACAGGCAGACATGAGGGGGCTTCCTTGACAGTGTAGTCTCT
GATGGAAAAGGTTGCCGCAGATCGATGTTGCGTAGGCTCAACCTTGTTTA
GCACCAGTGCTGTACGGTACGCGGTCATGTGTTTGCTTCAGCAGGTAAGA
GGTTCTGTCCCAACAACGGTGTTTGTGTTGGTCCTGATACCACCATACCT
ACGTGGAACATCAGTACATACAGTCCGATTTTTTGTTTGGGTTCTCCTGT
TTCATGTTGTGGTTGGGGGGCCCATGTAACGTAGGCGGGACCAGTTCGAA
AAGTACATCGGTGCACTCAGATGCCTTGTACTCCAGAAGATGCATATGTT
GCTTAAAAAGTACTTAGCGTGTTGAGATGCTCTTGTTTTTTTTCTTTGTT
TTTTTCCTCGATGTTTGCGTTGCGACATATCTTGTGCATACGTGTGCGTT
GCGAGTCAAGGAATGACATCGCGTCAGGAAGAGTTGTTGCACAGACGCTG
CAGTGCATACCACAAAAGAGAGCAGCAGACCCACAGATACATTTGAGTGA
TGAAGTACGGCCGATCGATGCACGCGCCTCTGAATGATGCTCGGCCGCGG
CATGCTTGCCAAACCTCCTCACACGGCATCCACTCTCTTCCCCAACTCGT
GATGCGTGTGTAGGTACACTATGCTGGCGTTATGATCACGTTTTCGTGCC
GAATAACTCGATTATTTCCTGGATGGTGCCGGAACCGGCACTCTTTAGGC
CGAGTTTGTGTAATGCCGGTTGCCCGTTATGATGCTGGTGAACTCTGCTG
CACCGCACCGGCATTTCACCGGGATCAGTACTGCAGTCTAAAAGGCCTAT
CATACATGTACTGCGTTTTTCTGCTGAGCGGTGATGGTCTTTTTTATTCG
TTTTGCGATGTCTTGAGTATTTTTTTTCCCGCCCACTTGCCTTTGGTTGC
ATTAGACACCACACCCGTCTGTTTTTTGGTACCAACGGTACCCTGTAGGG
GGTGTGATATCTTACGCCACCCGTGTAATGAAGTGCACTCACAGCACCCT
GTCTACAGGGTGTGTGACAACAATGGGGTTTGATGATGTCGCCCAAATGG
TGAAGCGCTGTCACATGACCCGTCCTACATGGGGTCTGACAATGATGGCA
TGTGATTACGTCGCCCGTGTGATGAAGTGCGCTCAGAGCAGGAAGCCGGG
TACAGGGTGTGATGAAAGGGATAATACGGGGTTAGCTGCAGATTATGTTG
TGCGGGCCTCAGCAGCACATATGGTGTCGTGCACGGCTGCCGAGGGAGTT
GTCTCAGCAGGGGCACACGTTTCCCCTGGGCGGGGCTTTCGGCAGGGTTG
TTCACTGTACCGCCTTCCATGGTATTGTCGTCCTCCATGGCGTTTGCGCG
CAGGTCGCTTCGCTTGTGTTCTTGTGATCACGTGTTGTCACGCGCAGGTC
GCTTCGCGTGTGTGCTTGTGATCGCGTGTTGTCACGTTGTCGCACCATGT
GATAAGCGGGGGGCCCGTCGATAGTTTGCGGCTTAACCTTTGGGGGTGTG
GTATCTTACCTATGTCACCGTGTGATAAAACAAGAAGAAAAAAAAACGTC
TTCTTTAAGGCTAAATACAATGTGTGCTAATGTGTGATTTTTTAAGGATG
TGTAGGTATCTTATGTACGTGTGATATCTTATGCAACCTACGTCAATCTA
CGGTGATGGCGTGCTTCGAAGTCTACCCCATGCCCGATCCGGCTCGCTTC
CCCTCAGTCAAACCTTCTTTCAAAGACAGTTTGCCCGGACATCAACCTTG
CTGGTTCGGCCGGCTTATTTCTCCTCGGTCGCGCTACGTGTATCAATACG
CAACAAGTAGCCCATCATTTGTTCACTGCCGCTCTTTTTTTGCATTCCTG
CCCCCAGCACACATGTAGGGTGTTCTACTTGCAGAAGTATAGGCTTGGGG
TTCGGGTCTCATTTCCTTTTCATGTTTCGGTGACTGACCCGCGACAGAGC
TCACGCGTCTCATCTCTAACGTACGACCACCGGTGCCGTGGTAGGCTCTA
CCTGGGCGTCCTAGAAGACCGCCTGGGCGTCTCGGAGGGCGGGCTTCCCG
ACAAGGTTTCCGAGCAGGACCTCTTGGATTCCTTCCGGGCGTCGCTCAAG
CGGAGGTCGAAGGAGCTGCCGTGCTTCGGCACGGGGGTCATGTCCTCCGA
GGACTGGTGGGCGGAGGTCGTGATGGCGACATTTCGCGGGGCTGGGGTTT
CGGACGAGACTCTCGGGATCAGCCGGGAAGGGGGACGAGGTGGTGACGGC
GGCGGCGGCGGCGGCGGCGGTGCTAGAGGCGGTCGTGTATTCGATGACGT
CTTCGATCGGCTGTTTCACGATGTGTTCACCAGCACGACCGCGTGGGAGC
TTGTGCCGGTGCGTTTCTGGACTTTCACTTTTTTTTTTGTGTGCGTGCAT
TCATGGATTTGAAAGGGGGGAGGTGGAGGTCACGGGGTGGGAACTGTGAG
TGGATGAGTGAGGGATTGGCTGGCGATGTAAAAACGTTGGCGCCTTTGTA
CATGTCGAGTGCCAGGGAAAGATAGAGCAGCGGATGGGCTCGAGCAGGCA
AGCGATTCGTTTTCAAGAGGCGTAAAACCAAGCACCCGAAAAAGAGACAC
AAGCTTCGCGGCGTGCTGTTGCATGCAAGATAAACGGCCCTTGCGGGTAC
ATTTTGTGTCACAACGCACCTGAACCTTCCGACCCCCACAGATTTCAGCG
TACATTTGGTTTCATGGCCCCACTGGGCGCCTCTCACTGCTATTGCTCTT
GAGTGCAAGAGGAGGTACACTACGATGTCGGCCGTTATTGAGCGTAGCAC
CCTCCCCTCTTTTTTTTTTCTCATTTTTCAAAGTGCCCCTGCTAATGTTC
TTCGTCGGGTCTTCACTTCACGAGCAGGGAGCGGAAAAGGTGCTGGAGGA
TCTTCGCGCTTGGGTTGGGGAAGATGGAGGACCGCGGGCACTTGGCGCGG
TGCGTATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig578:19889..23699+

>mRNA_Ecto-sp13_S_contig578.16213.1 ID=mRNA_Ecto-sp13_S_contig578.16213.1|Name=mRNA_Ecto-sp13_S_contig578.16213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig578:19889..23699+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGGTTCTCGCCTAGCGTTCGCGTCTGCAGCTGTAAAATGGTCCCA
TCTGCCCGTTAGCACCCCGCCGCCTTCAACCAGGCGACTTCTGACGATGC
GCGCAGGCCCGGACGTGGTATGTCTAGATTGCACGGGCACCATCATGCGG
ATAAAGGGCTCGATGCCGAGGCTCTACCTGGGCGTCCTAGAAGACCGCCT
GGGCGTCTCGGAGGGCGGGCTTCCCGACAAGGTTTCCGAGCAGGACCTCT
TGGATTCCTTCCGGGCGTCGCTCAAGCGGAGGTCGAAGGAGCTGCCGTGC
TTCGGCACGGGGGTCATGTCCTCCGAGGACTGGTGGGCGGAGGTCGTGAT
GGCGACATTTCGCGGGGCTGGGGTTTCGGACGAGACTCTCGGGATCAGCC
GGGAAGGGGGACGAGGTGGTGACGGCGGCGGCGGCGGCGGCGGCGGTGCT
AGAGGCGGTCGTGTATTCGATGACGTCTTCGATCGGCTGTTTCACGATGT
GTTCACCAGCACGACCGCGTGGGAGCTTGTGCCGGGAGCGGAAAAGGTGC
TGGAGGATCTTCGCGCTTGGGTTGGGGAAGATGGAGGACCGCGGGCACTT
GGCGCGGTGCGTATGTAA
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