mRNA_Ecto-sp13_S_contig5769.16190.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5769.16190.1
Unique NamemRNA_Ecto-sp13_S_contig5769.16190.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5769.16190.1 vs. uniprot
Match: D7G850_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G850_ECTSI)

HSP 1 Score: 1295 bits (3350), Expect = 0.000e+0
Identity = 689/741 (92.98%), Postives = 702/741 (94.74%), Query Frame = 3 
Query:  108 MDENFDPNRAVHWPSGAVSSEPSPSKEVADKDAPLVAVLSALEDGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPATGEAASAVRSALQHVVVRPPSVMTHSPGPGGRAAAAGGVGVAPTLRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLPMVVAGVSGAPGGLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKSSPFARLAMEWDCSTNATRTLGSAPPPACSSLLLIGGECPPTTVCAKIRGDIEALKTAVERGAAPQQARRKAKGPFGGRRGDTGHDEAHPGGASASGDGEEQERRRWDEDLQLLLSGSENMAEFAAKPVDVPAAGGGSDDALEAGRAEEDTAVQGRTDGGGLGEEEVGSGMQEVPEKVRGDLDFSERLWELAACAADVEGVRSAVALAFDAVGEGQIFPVISRDSKTVVGCHIRDGVAMAREARYQDGTSACLGDKAKAEAWRERGSALLADEDALASAFVELGVHKVTRDLLHWLEAYAGVLAAEVDRALPATAAAAAXXXXXXXXXXXXXXX-RRLNRLLTLADTLDLVALAQSFGAPWRQLAHPVFWELYLEPAGGSGAGGAMETVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALSDCPARLIPEVLSSVTGAESFVELKRRLLEHKAKGASVGGDAVFVCEHSFIPW 2327
            MDENFDPNRAVH PSGAVSSEPSPSKEVAD+DAPLVAVLSAL DGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPA GEAASAVRSALQHVVVRPPSV THSPGPGGRAAAAGGVGVAPTLRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLP VVAGVSGAPGGLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKS+PFARLA EWDCST+ATRTLGSAPPPACSSLLLIGGECPPTTV AKIRG+IEALKTAVERGAAPQQARRKAKGPFGG +G TG  EAHPGGASASGDGEEQERRRWDEDLQ LLSGSENMAEFAAKPVDVP  GGGSDD LEAGRAEEDTAVQ RTDGGG+GEEEVGSGMQEVPEKVRGDLDFSERLWELAA A DVEGVRSAVALAFDAVGEGQ+FPVISRDSKT VGCHIRDGVAMAREARYQDGTS CLGD+AKAEAWRERGSALLADED+LASAFVELGVHKVTRDLLHWLEAYAGVLAA+VDRALP TAAAAA                RRL+RLLTLADTLDLVALAQS+GAPWRQLAHPVFWELYLEPAGGSG GGAMETVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALS CPARLIPEVLSSVTGAESFVELKRRLLEHKAKGA+VGGDAVFVCEHSFIPW
Sbjct:    1 MDENFDPNRAVHRPSGAVSSEPSPSKEVADEDAPLVAVLSALGDGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPAAGEAASAVRSALQHVVVRPPSVTTHSPGPGGRAAAAGGVGVAPTLRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLPTVVAGVSGAPGGLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKSNPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGNIEALKTAVERGAAPQQARRKAKGPFGGEKGGTGRAEAHPGGASASGDGEEQERRRWDEDLQALLSGSENMAEFAAKPVDVPVGGGGSDDTLEAGRAEEDTAVQDRTDGGGVGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVEGVRSAVALAFDAVGEGQMFPVISRDSKTAVGCHIRDGVAMAREARYQDGTSGCLGDEAKAEAWRERGSALLADEDSLASAFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPDTAAAAAAGDRPAPGTGGSAAGDRRLDRLLTLADTLDLVALAQSYGAPWRQLAHPVFWELYLEPAGGSGVGGAMETVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALSGCPARLIPEVLSSVTGAESFVELKRRLLEHKAKGATVGGDAVFVCEHSFIPW 741
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5769.16190.1 vs. uniprot
Match: A0A6H5L254_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L254_9PHAE)

HSP 1 Score: 1259 bits (3257), Expect = 0.000e+0
Identity = 679/783 (86.72%), Postives = 689/783 (87.99%), Query Frame = 3 
Query:  108 MDENFDPNRAVHWPSGAVSSEPSPSKEVADKDAPLVAVLSALEDGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPATGEAASAVRSALQHVVVRPPSVMTHSPGPGGRAAAAGGVGVAPTLRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLPMVVAGVSGAPGGLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKSSPFARLAMEWDCSTNATRTLGSAPPPACSSLLLIGGECPPTTVCAKIRGDIEALKTAVERGAAPQQARRKAKGPFGGRRGDTGHDEAHPGGASASGDGEEQERRRWDEDLQLLLSGSENMAEFAAKPVDVPAAGGGSDDALEAGRAEEDTAVQGRTDGGGLGEEEVGSGMQEVPEKVRGDLDFSERLWELAACAADVEGVRSAVALAFDAVGEGQIFPVISRDSKTVVGCHIRDGVAMAREARYQDGTSACLGDKAKAEAWRERGSALLADEDALASAFVELGVHKVTRDLLHWLEAYAGVLAAEVDRALPATAAAAAXXXXXXXXXXXXXXXRRLNRLLTLADTLDLVALAQSFGAPWRQ-------------------------------------------LAHPVFWELYLEPAGGSGAGGAMETVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALSDCPARLIPEVLSSVTGAESFVELKRRLLEHKAKGASVGGDAVFVCEHSFIPW 2327
            MDENFDPNRAVHWPSGAVSSEPSPSK+VAD+DAPLVAVLSALEDGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAP  GEAASAVRSALQHVVVRPPSV THSPGPGGRAAAAGGVGVAP LRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPA GESRTLP VV GVSGAP GLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAK SPFARLA EWDCST+ATRTLGSAPPPACSSLLLIGGECPPTTV AKIRGDI+ LKTAVERG APQQ RRK KGPFGG RGDTG DEA PGG  A GDGEEQERRRWDEDLQ LLSGSENMAEFAAKPVDVP  GGGSDDALEAGRAEEDTAVQ RTDGGGLGEEEVGSGMQEVPEKVRGDLDFSERLWELAA A DV+GVRSAVALAF+AVGEGQIFPVISRDSKT VGCHIRDGVAMAREARYQDGTSACLGD+AKAEAWRERGSALLADEDALAS FVELGVHKVTRDLLHWLEAYAGVLAA+VDRALPA AAAA                RRL+RLLTLADTLDLVALAQS+GAPWRQ                                           LAHPVFWELYLEPAGGSG GGAMETVSYTLANAGLFQLS LDEPPALSGEAARAAQAALSDCPARLIPEVLSSVTGAESFVELKRRLL HKA GASV GDAVFVCEHSFIPW
Sbjct:    1 MDENFDPNRAVHWPSGAVSSEPSPSKQVADEDAPLVAVLSALEDGQVAIAGDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPTAGEAASAVRSALQHVVVRPPSVTTHSPGPGGRAAAAGGVGVAPALRAISPSSYSAVVDSNLLRAFTATRARMILAGLTPPPAEGESRTLPTVVVGVSGAPDGLCFLGQRATPEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWGDSSGDFLGECLQEGAKLSPFARLATEWDCSTHATRTLGSAPPPACSSLLLIGGECPPTTVSAKIRGDIDVLKTAVERGVAPQQTRRKTKGPFGGGRGDTGRDEALPGGTCAPGDGEEQERRRWDEDLQALLSGSENMAEFAAKPVDVPVGGGGSDDALEAGRAEEDTAVQDRTDGGGLGEEEVGSGMQEVPEKVRGDLDFSERLWELAARATDVKGVRSAVALAFNAVGEGQIFPVISRDSKTAVGCHIRDGVAMAREARYQDGTSACLGDEAKAEAWRERGSALLADEDALASVFVELGVHKVTRDLLHWLEAYAGVLAADVDRALPAAAAAAVGDKPAPGTGGSAARDRRLDRLLTLADTLDLVALAQSYGAPWRQVRSLALSGLTALQRPPVAGPPPSSSPVFSLGLPKPIPPCARCKLAHPVFWELYLEPAGGSGVGGAMETVSYTLANAGLFQLSRLDEPPALSGEAARAAQAALSDCPARLIPEVLSSVTGAESFVELKRRLLMHKANGASVAGDAVFVCEHSFIPW 783
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5769.16190.1 vs. uniprot
Match: A0A836C9H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9H3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.090e-21
Identity = 161/539 (29.87%), Postives = 216/539 (40.07%), Query Frame = 3 
Query:  495 VAPTLRAISPSSYS--AVVDSNLLRAFTATRARMILAGLTPPPAGGESRTLPMVVAGVSGAPGGLCFLGQRATPE-GHSSFSF--RRDSEQE----------AAGGRAQALRIDDLVREYGGRAHAS--ARALYDLWGDSSGDFLGECLQEGAKSSPFARLAMEWDCSTNATRTLGSAPPPACSSLLLIGGECPPTTVCAKIRGDIEALKTAVERGAAPQQARRKAKGPFGGRRGDTGHDEAHPGGASASGDGEEQERRRWDEDLQLLLSGSENMAEFAAKPVDVPAAGGGSDDALEAGRAEEDTAVQGRTDGGGLGEEEVGSGMQEVPEK--VRGDLDFSERLWELAACAADVEGVRSAVALAFDAVGEGQIFPVISRDSKTVVGCHIRDGVAMAREARYQDGTSAC-LGDKAKAEAWRERGSALLADEDALASA------FVELGVHKVTRDLLHWLEAYAGVLAAEVDRALPATAAAA--------------AXXXXXXXXXXXXXXXRRLNRLLTLADTLDLVALAQSFGAPWRQ 1991
            V P+ R   P  Y    V D ++L+A    RAR +L  L    A G   T   +VA V G P GLC LGQR  P  G+ + +   R  +++E          A  G A A  +D      G     S   RALY++WG       G+  +  A  +P   L  EWDC+    R +G  PP  C S L++GG    +  C   R                                                     E+  W   LQ LLS S + A  +    D  AA  GS  A+ AG+  +D+ +   T        ++G      P K  VRGDLDFSERLWE+AA  A  E + +A+  A  AV  G + P I   + T V   I   +  A+E +Y   + A  L  K    A  + G A    E    SA       VELG+HKV  D+ HW    A +   ++   L     A               A     XXXXXXXXXX+ + RL   AD  ++V LA +  APW+Q
Sbjct:  424 VQPSSRKSCPWFYDRGVVDDGSVLQALEPGRARTVLGQLA---AEGFQLT---IVAAVRG-PAGLCCLGQRVAPRTGYETLAVHCRTSADEEKSDVLSTAADAVAGAAAAW-LDAAFSGGGALPQPSMRVRALYEMWG------AGDSSEGAAADAPTGALLCEWDCAGGRHRGVGDGPPATCRSQLIVGGRAMLSAACHTFRAG---------------------------------------------------EQPPWQGHLQQLLSASADEAALSTFG-DESAADNGSS-AVTAGQGPDDSMLLDAT-------LDIGFSRSAAPTKIAVRGDLDFSERLWEVAANMATGEEMAAALTQAAAAVRAGSLLPAIGTHNTTAVAGAIAACLRRAQEQQYGGRSQAATLSSKRSEAAVLDAGPAAALLEGRPPSATEAAALLVELGLHKVANDMRHWFTLEAALSTGDLHWHLNCHVGAVDDVGDVEEHWRSPLAPHYRVXXXXXXXXXXQAIRRLSLAADAAEVVTLAAACSAPWQQ 888
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5769.16190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G850_ECTSI0.000e+092.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L254_9PHAE0.000e+086.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9H3_9STRA1.090e-2129.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5769contigEcto-sp13_S_contig5769:882..4431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2330
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001490.1
Cds size2223
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463799.4403331-CDS-Ecto-sp13_S_contig5769:881..12201681463799.4403331-CDS-Ecto-sp13_S_contig5769:881..1220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5769 882..1220 -
1681463799.4515631-CDS-Ecto-sp13_S_contig5769:1349..30231681463799.4515631-CDS-Ecto-sp13_S_contig5769:1349..3023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5769 1350..3023 -
1681463799.4629786-CDS-Ecto-sp13_S_contig5769:4114..43241681463799.4629786-CDS-Ecto-sp13_S_contig5769:4114..4324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5769 4115..4324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463799.4735417-UTR-Ecto-sp13_S_contig5769:4324..44311681463799.4735417-UTR-Ecto-sp13_S_contig5769:4324..4431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5769 4325..4431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5769.16190.1prot_Ecto-sp13_S_contig5769.16190.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5769 882..4324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5769.16190.1

>prot_Ecto-sp13_S_contig5769.16190.1 ID=prot_Ecto-sp13_S_contig5769.16190.1|Name=mRNA_Ecto-sp13_S_contig5769.16190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=741bp
MDENFDPNRAVHWPSGAVSSEPSPSKEVADKDAPLVAVLSALEDGQVAIA
GDVVAIRAGPETYHPVKALKGMASESDVIILSCLTKAPATGEAASAVRSA
LQHVVVRPPSVMTHSPGPGGRAAAAGGVGVAPTLRAISPSSYSAVVDSNL
LRAFTATRARMILAGLTPPPAGGESRTLPMVVAGVSGAPGGLCFLGQRAT
PEGHSSFSFRRDSEQEAAGGRAQALRIDDLVREYGGRAHASARALYDLWG
DSSGDFLGECLQEGAKSSPFARLAMEWDCSTNATRTLGSAPPPACSSLLL
IGGECPPTTVCAKIRGDIEALKTAVERGAAPQQARRKAKGPFGGRRGDTG
HDEAHPGGASASGDGEEQERRRWDEDLQLLLSGSENMAEFAAKPVDVPAA
GGGSDDALEAGRAEEDTAVQGRTDGGGLGEEEVGSGMQEVPEKVRGDLDF
SERLWELAACAADVEGVRSAVALAFDAVGEGQIFPVISRDSKTVVGCHIR
DGVAMAREARYQDGTSACLGDKAKAEAWRERGSALLADEDALASAFVELG
VHKVTRDLLHWLEAYAGVLAAEVDRALPATAAAAAGDRPAPGTGGNAAGD
RRLNRLLTLADTLDLVALAQSFGAPWRQLAHPVFWELYLEPAGGSGAGGA
METVSYTLANAGLFQLSGLDEPPALSGEAARAAQAALSDCPARLIPEVLS
SVTGAESFVELKRRLLEHKAKGASVGGDAVFVCEHSFIPW*
back to top

mRNA from alignment at Ecto-sp13_S_contig5769:882..4431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5769.16190.1 ID=mRNA_Ecto-sp13_S_contig5769.16190.1|Name=mRNA_Ecto-sp13_S_contig5769.16190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3550bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5769:882..4431- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAAGGACTGCTGTACAGCAGTGCAGTACGTGAGGTGCAGTGACTTCA
AGCAAGTCGAGCTGAGAGAGACATTCAGGCAGACGATAAAGCTCGAGGAT
CACCACTATGGACGAGAACTTCGACCCAAACCGAGCTGTACATTGGCCCA
GTGGCGCCGTAAGCAGTGAGCCATCCCCCTCAAAAGAGGTTGCAGACAAG
GATGCGCCGCTCGTTGCTGTGCTCAGCGCGTTGGAGGATGGGCAAGTGGC
TATCGCGGGGGACGTTGTGGCCATACGGGCGGGACCGGAAACTTACCATC
CTGTCAAGGCGTTGAAGGTACTGCTTGAAGAATTGAAGGGGTGATACGCG
GGCGGCAGAGAAATTGAGAAACCGTTAGGTTTTTGATACCCTCCGCGTCC
AACAGCAGCAGATGTGAGGTACACCGCCGTGAAGTAGACAGGCAGCGCTG
GACAGTGGACAACGGTTCCTGCCGCTGGTAAAATCCAACATGCGTTTCCA
GCTTTTGTGCCTGCGAACGAATCAGTGCATAGAACTTGGACTACTCTGTT
CTCTCAACATGACATTCGCACGAAATCGCCCCGCTTGATGTGCGGACACT
GGAGAGAAGAACAATAATCAATATCCCGGATCTTTTCTGGTGATGCTCCA
TGCTCCATGCTCCATGCTGCATTCTCAGTCCAACTCCAACATACCACTTT
CTTTAGGGATTGCATGGATGATGCTCACTTCTGCGGTTCAGGTCTACTTC
TTGTGTCGTACGAAGTACGTAATCTCAGTTCGCAAGACGCGAGTTTTTCG
CTATTACGCCTGCCCCTGGGCTCTTGTACAAGAAGATATCTTCACGGCAC
GACGAGCCCAACCCAAATTGTCAATAATTCTGGAGAAGTTGCTCGGTTTT
GGCACCCTCCGTCATGGGAGGGAACTCGAGCAATCGAGCTCGGGGAACCG
AAGCTTTTCCCGGGGTAACTGGTGACGTGGAAAAACGCGTAAGCAGACCC
ACGGCCATGTAAACAATTTCCGCCTGTTTTCTCGAAAGGCGACGGACCGG
GGCATTGATGACGTGGACAAGGTTGCGAATGGGCTTCAGCTTTCAGGCTT
GAAGATTGGGTGCTTGAAGCTGCTGCGCCGTACGTAGCAGTAGTTTGTCT
CCTGAACAACGAAATGCGAAGCCTCTGTACCGTAACCGTCGTATCCACAT
CATCATCATCAATCTCCGACTGAAACAACCAACAGGACCTCACCAAGGCT
ACCGAGTATAGCTAATATAGTGTCGACTCTCTGCAAAGTCAGACCCTCCT
TAAACTCTGTGTATCCTAATGCTCAGCGTGGCCGTACAATATTGGTCACG
ATAAGTCAACATTTTGCAGCTCTAACCGTCGCCCCTGGCCCACGCTGTTG
CTGAACAGGGAATGGCGTCCGAGAGCGACGTTATCATCCTCTCCTGCTTG
ACCAAAGCGCCCGCCACCGGCGAGGCTGCCTCAGCCGTGCGCTCCGCCCT
TCAGCACGTCGTGGTGCGCCCGCCCTCGGTCATGACCCACAGCCCCGGGC
CGGGAGGCAGAGCGGCCGCGGCGGGAGGCGTGGGGGTGGCCCCTACCCTG
CGGGCCATCTCCCCGTCCTCCTACTCCGCTGTCGTCGACAGCAACCTGCT
GCGGGCGTTCACGGCGACGCGTGCTCGGATGATCCTGGCGGGGCTGACCC
CGCCGCCGGCCGGGGGCGAGTCACGGACGCTGCCGATGGTGGTCGCCGGG
GTGTCTGGGGCCCCCGGCGGCCTGTGCTTTCTCGGGCAGAGGGCGACGCC
TGAGGGCCACAGCTCGTTCTCCTTCCGGCGAGACAGCGAGCAGGAAGCGG
CCGGGGGGCGGGCGCAGGCCCTCAGGATCGACGACTTGGTGCGCGAGTAC
GGGGGCCGCGCGCACGCCTCCGCTCGCGCTCTGTACGACCTGTGGGGTGA
CTCGAGCGGCGACTTCCTCGGTGAGTGCCTGCAAGAGGGCGCCAAGTCGA
GCCCCTTCGCCCGTCTTGCCATGGAGTGGGACTGCTCGACCAACGCCACG
CGGACCCTTGGGTCGGCTCCACCTCCCGCGTGCTCGTCCCTACTTCTCAT
CGGCGGGGAGTGCCCTCCGACTACGGTTTGCGCCAAGATCCGGGGGGATA
TCGAGGCCCTCAAGACGGCTGTGGAGAGGGGGGCGGCGCCGCAGCAAGCA
CGCCGGAAAGCGAAAGGTCCGTTTGGGGGCAGGAGAGGAGACACCGGTCA
CGACGAAGCACATCCAGGCGGTGCCAGTGCTTCTGGGGACGGGGAGGAGC
AGGAGCGGAGGCGGTGGGATGAAGATCTTCAGTTACTGCTTAGCGGGTCC
GAGAATATGGCGGAGTTCGCGGCGAAGCCAGTCGATGTGCCGGCCGCGGG
CGGGGGCAGCGACGATGCGTTGGAAGCGGGTAGAGCTGAGGAGGACACTG
CGGTTCAAGGCCGTACCGACGGCGGCGGTTTGGGAGAGGAAGAGGTCGGA
TCGGGCATGCAGGAGGTACCGGAGAAGGTCAGAGGCGACCTCGACTTCTC
TGAGAGGCTGTGGGAGCTGGCTGCGTGTGCCGCAGACGTGGAAGGCGTGC
GATCGGCGGTCGCGTTGGCTTTCGACGCCGTCGGAGAGGGGCAGATATTC
CCGGTCATCAGCCGAGACAGCAAGACTGTCGTCGGCTGCCACATTCGAGA
CGGCGTCGCAATGGCGCGAGAGGCGAGGTACCAAGACGGGACGTCCGCGT
GCCTCGGGGACAAAGCCAAGGCCGAGGCGTGGCGAGAGCGGGGGTCGGCC
TTGCTCGCGGACGAGGACGCCCTGGCGAGCGCGTTCGTGGAGCTTGGCGT
GCACAAGGTGACGCGCGACCTGTTGCACTGGCTCGAGGCGTACGCCGGCG
TCCTCGCGGCCGAAGTCGACCGCGCGCTGCCGGCCACCGCCGCCGCCGCC
GCCGGGGACAGGCCGGCTCCCGGCACCGGCGGCAACGCGGCGGGAGACCG
CCGCTTGAACCGTCTCCTCACACTCGCCGACACGCTGGACCTCGTCGCGC
TGGCTCAGTCCTTCGGGGCGCCGTGGCGACAGGTGCGATCTCTAGCGCTT
AGCGGTCTGACCACGATCCAGCGGCCACGGGCGGCTGGCCCGCCGCCGTC
GTCCTCGCCCGTGTTTTCCCTCGGCCTGCCTAAGCCCATCCCGCCCCGCG
CGCGCTGCAAGCTCGCCCACCCGGTGTTCTGGGAGCTGTACCTGGAGCCC
GCGGGGGGCAGCGGAGCGGGAGGCGCGATGGAGACTGTGTCGTACACGTT
GGCGAACGCCGGCTTGTTCCAGCTGAGTGGGTTGGATGAGCCCCCGGCGC
TGTCGGGGGAAGCGGCCCGCGCGGCGCAAGCCGCCCTGAGCGATTGCCCC
GCCCGCCTGATCCCGGAGGTGTTGTCGAGCGTGACCGGAGCTGAGAGTTT
CGTGGAGCTCAAGCGGCGACTGCTGGAGCATAAGGCCAAGGGTGCAAGCG
TGGGGGGCGACGCGGTCTTTGTTTGCGAGCACAGCTTCATCCCTTGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5769:882..4431-

>mRNA_Ecto-sp13_S_contig5769.16190.1 ID=mRNA_Ecto-sp13_S_contig5769.16190.1|Name=mRNA_Ecto-sp13_S_contig5769.16190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2223bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5769:882..4431- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGAACTTCGACCCAAACCGAGCTGTACATTGGCCCAGTGGCGC
CGTAAGCAGTGAGCCATCCCCCTCAAAAGAGGTTGCAGACAAGGATGCGC
CGCTCGTTGCTGTGCTCAGCGCGTTGGAGGATGGGCAAGTGGCTATCGCG
GGGGACGTTGTGGCCATACGGGCGGGACCGGAAACTTACCATCCTGTCAA
GGCGTTGAAGGGAATGGCGTCCGAGAGCGACGTTATCATCCTCTCCTGCT
TGACCAAAGCGCCCGCCACCGGCGAGGCTGCCTCAGCCGTGCGCTCCGCC
CTTCAGCACGTCGTGGTGCGCCCGCCCTCGGTCATGACCCACAGCCCCGG
GCCGGGAGGCAGAGCGGCCGCGGCGGGAGGCGTGGGGGTGGCCCCTACCC
TGCGGGCCATCTCCCCGTCCTCCTACTCCGCTGTCGTCGACAGCAACCTG
CTGCGGGCGTTCACGGCGACGCGTGCTCGGATGATCCTGGCGGGGCTGAC
CCCGCCGCCGGCCGGGGGCGAGTCACGGACGCTGCCGATGGTGGTCGCCG
GGGTGTCTGGGGCCCCCGGCGGCCTGTGCTTTCTCGGGCAGAGGGCGACG
CCTGAGGGCCACAGCTCGTTCTCCTTCCGGCGAGACAGCGAGCAGGAAGC
GGCCGGGGGGCGGGCGCAGGCCCTCAGGATCGACGACTTGGTGCGCGAGT
ACGGGGGCCGCGCGCACGCCTCCGCTCGCGCTCTGTACGACCTGTGGGGT
GACTCGAGCGGCGACTTCCTCGGTGAGTGCCTGCAAGAGGGCGCCAAGTC
GAGCCCCTTCGCCCGTCTTGCCATGGAGTGGGACTGCTCGACCAACGCCA
CGCGGACCCTTGGGTCGGCTCCACCTCCCGCGTGCTCGTCCCTACTTCTC
ATCGGCGGGGAGTGCCCTCCGACTACGGTTTGCGCCAAGATCCGGGGGGA
TATCGAGGCCCTCAAGACGGCTGTGGAGAGGGGGGCGGCGCCGCAGCAAG
CACGCCGGAAAGCGAAAGGTCCGTTTGGGGGCAGGAGAGGAGACACCGGT
CACGACGAAGCACATCCAGGCGGTGCCAGTGCTTCTGGGGACGGGGAGGA
GCAGGAGCGGAGGCGGTGGGATGAAGATCTTCAGTTACTGCTTAGCGGGT
CCGAGAATATGGCGGAGTTCGCGGCGAAGCCAGTCGATGTGCCGGCCGCG
GGCGGGGGCAGCGACGATGCGTTGGAAGCGGGTAGAGCTGAGGAGGACAC
TGCGGTTCAAGGCCGTACCGACGGCGGCGGTTTGGGAGAGGAAGAGGTCG
GATCGGGCATGCAGGAGGTACCGGAGAAGGTCAGAGGCGACCTCGACTTC
TCTGAGAGGCTGTGGGAGCTGGCTGCGTGTGCCGCAGACGTGGAAGGCGT
GCGATCGGCGGTCGCGTTGGCTTTCGACGCCGTCGGAGAGGGGCAGATAT
TCCCGGTCATCAGCCGAGACAGCAAGACTGTCGTCGGCTGCCACATTCGA
GACGGCGTCGCAATGGCGCGAGAGGCGAGGTACCAAGACGGGACGTCCGC
GTGCCTCGGGGACAAAGCCAAGGCCGAGGCGTGGCGAGAGCGGGGGTCGG
CCTTGCTCGCGGACGAGGACGCCCTGGCGAGCGCGTTCGTGGAGCTTGGC
GTGCACAAGGTGACGCGCGACCTGTTGCACTGGCTCGAGGCGTACGCCGG
CGTCCTCGCGGCCGAAGTCGACCGCGCGCTGCCGGCCACCGCCGCCGCCG
CCGCCGGGGACAGGCCGGCTCCCGGCACCGGCGGCAACGCGGCGGGAGAC
CGCCGCTTGAACCGTCTCCTCACACTCGCCGACACGCTGGACCTCGTCGC
GCTGGCTCAGTCCTTCGGGGCGCCGTGGCGACAGCTCGCCCACCCGGTGT
TCTGGGAGCTGTACCTGGAGCCCGCGGGGGGCAGCGGAGCGGGAGGCGCG
ATGGAGACTGTGTCGTACACGTTGGCGAACGCCGGCTTGTTCCAGCTGAG
TGGGTTGGATGAGCCCCCGGCGCTGTCGGGGGAAGCGGCCCGCGCGGCGC
AAGCCGCCCTGAGCGATTGCCCCGCCCGCCTGATCCCGGAGGTGTTGTCG
AGCGTGACCGGAGCTGAGAGTTTCGTGGAGCTCAAGCGGCGACTGCTGGA
GCATAAGGCCAAGGGTGCAAGCGTGGGGGGCGACGCGGTCTTTGTTTGCG
AGCACAGCTTCATCCCTTGGTGA
back to top