mRNA_Ecto-sp13_S_contig5765.16187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5765.16187.1
Unique NamemRNA_Ecto-sp13_S_contig5765.16187.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5765.16187.1 vs. uniprot
Match: A0A6H5KIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC1_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 2.020e-67
Identity = 119/138 (86.23%), Postives = 126/138 (91.30%), Query Frame = 1 
Query:    1 RVEASFPEGHHGGDAAAAARKAEARPTGPAPASASSPAASELKIVLASLLWENLVTWVLSQCGVTVFGIRVVLDCPGDSAGVADCRTGRGTRGGGGGVSTELFVSCVEAFAKPLERGGGGTKLAVRMDQARGFDSLCL 414
            RVEASFPE HH GDAAA  RKAE RPTGP PASASSPAASELKI+LASLLWE L TWVLSQCGVTVFGIRVVLDCP +SAGVADCRTGRG  GGG GVSTELFVSCVEAFAKPLERGGGGT+LA+R++QARGFD+LCL
Sbjct:   96 RVEASFPEEHHDGDAAAV-RKAEVRPTGPTPASASSPAASELKILLASLLWEKLATWVLSQCGVTVFGIRVVLDCPENSAGVADCRTGRGAWGGGRGVSTELFVSCVEAFAKPLERGGGGTRLALRIEQARGFDTLCL 232
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BLAST of mRNA_Ecto-sp13_S_contig5765.16187.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.570e-58
Identity = 110/132 (83.33%), Postives = 114/132 (86.36%), Query Frame = 1 
Query:    1 RVEASFPEGHHGGDAAAAARKAEARPTGPAPASASSPAASELKIVLASLLWENLVTWVLSQCGVTVFGIRVVLDCPGDSAGVADCRTGRGTRGGGGG---VSTELFVSCVEAFAKPLERGGGGTKLAVRMDQ 387
            RVEASFPEGHH GDAAAA  KAEARPTGP PASASSPAASELK +L SLLWENL TWVLSQCGVTVFGIRVVLD  G SAGVADCRTGRG R    G   VSTE+FVSCVEAFAKPLERGGGGTKLAVR++Q
Sbjct:   96 RVEASFPEGHHDGDAAAAVGKAEARPTGPTPASASSPAASELKTLLTSLLWENLATWVLSQCGVTVFGIRVVLDYRGSSAGVADCRTGRGVRSRADGCVFVSTEVFVSCVEAFAKPLERGGGGTKLAVRIEQ 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5765.16187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIC1_9PHAE2.020e-6786.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K0_ECTSI1.570e-5883.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5765contigEcto-sp13_S_contig5765:8133..8869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463798.8977275-CDS-Ecto-sp13_S_contig5765:8132..85031681463798.8977275-CDS-Ecto-sp13_S_contig5765:8132..8503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5765 8133..8503 -
1681463798.9110353-CDS-Ecto-sp13_S_contig5765:8823..88691681463798.9110353-CDS-Ecto-sp13_S_contig5765:8823..8869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5765 8824..8869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5765.16187.1prot_Ecto-sp13_S_contig5765.16187.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5765 8133..8869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5765.16187.1

>prot_Ecto-sp13_S_contig5765.16187.1 ID=prot_Ecto-sp13_S_contig5765.16187.1|Name=mRNA_Ecto-sp13_S_contig5765.16187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
RVEASFPEGHHGGDAAAAARKAEARPTGPAPASASSPAASELKIVLASLL
WENLVTWVLSQCGVTVFGIRVVLDCPGDSAGVADCRTGRGTRGGGGGVST
ELFVSCVEAFAKPLERGGGGTKLAVRMDQARGFDSLCL*
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mRNA from alignment at Ecto-sp13_S_contig5765:8133..8869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5765.16187.1 ID=mRNA_Ecto-sp13_S_contig5765.16187.1|Name=mRNA_Ecto-sp13_S_contig5765.16187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=737bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5765:8133..8869- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGTGGAGGCGTCGTTTCCTGAGGGGCACCATGGCGGCGATGCAGGTGG
GTCCACAGTGCGTGACACGACCAAATTCATGTTTTTTTCTCAAGGGGCAC
GGCTCCCGTTGCAACTGTTCCTCGCTGGTGAAATTCTGGGCTTCTGGGAG
TTGATTTCGGGAAAGGGTCGTAGACACAGGGAAGCATGGCTGCTCGGTGA
AAGGCCTGCAAGAGTTTTGTGCGCCGCGATGCCATGTTGAGCTTATCCCC
GTTCTCGTCAATACCTCAGGCGCAACCGTCTCGCGTGCCGGTGAACCTGC
CTTTTGTTCACTTCACCGTGTTGCCCCGATGAACTGCCTCGTGTTGCACC
CACCCACCCTAAGCAGCAGCCGCCGCGAGGAAGGCTGAAGCTCGACCCAC
TGGCCCCGCGCCCGCCTCGGCCTCATCCCCAGCTGCCTCGGAGCTTAAGA
TCGTGCTCGCGTCGCTCTTGTGGGAGAACCTGGTGACTTGGGTTCTCAGC
CAGTGCGGCGTTACCGTGTTTGGGATCAGGGTGGTGCTGGACTGCCCAGG
AGATTCGGCGGGGGTGGCCGACTGTCGCACGGGGCGGGGGACACGCGGCG
GGGGAGGGGGCGTATCGACGGAGCTGTTCGTCTCGTGTGTGGAGGCGTTT
GCGAAGCCGTTGGAGCGGGGCGGAGGGGGAACCAAGCTTGCGGTCCGGAT
GGACCAGGCGCGTGGATTCGATTCTCTCTGTTTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5765:8133..8869-

>mRNA_Ecto-sp13_S_contig5765.16187.1 ID=mRNA_Ecto-sp13_S_contig5765.16187.1|Name=mRNA_Ecto-sp13_S_contig5765.16187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5765:8133..8869- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGTGGAGGCGTCGTTTCCTGAGGGGCACCATGGCGGCGATGCAGCAGC
CGCCGCGAGGAAGGCTGAAGCTCGACCCACTGGCCCCGCGCCCGCCTCGG
CCTCATCCCCAGCTGCCTCGGAGCTTAAGATCGTGCTCGCGTCGCTCTTG
TGGGAGAACCTGGTGACTTGGGTTCTCAGCCAGTGCGGCGTTACCGTGTT
TGGGATCAGGGTGGTGCTGGACTGCCCAGGAGATTCGGCGGGGGTGGCCG
ACTGTCGCACGGGGCGGGGGACACGCGGCGGGGGAGGGGGCGTATCGACG
GAGCTGTTCGTCTCGTGTGTGGAGGCGTTTGCGAAGCCGTTGGAGCGGGG
CGGAGGGGGAACCAAGCTTGCGGTCCGGATGGACCAGGCGCGTGGATTCG
ATTCTCTCTGTTTGTAA
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