mRNA_Ecto-sp13_S_contig5761.16185.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5761.16185.1
Unique NamemRNA_Ecto-sp13_S_contig5761.16185.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5761.16185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5761contigEcto-sp13_S_contig5761:1203..1563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size361
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463798.7269132-UTR-Ecto-sp13_S_contig5761:1202..12121681463798.7269132-UTR-Ecto-sp13_S_contig5761:1202..1212Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5761 1203..1212 +
1681463798.7503145-UTR-Ecto-sp13_S_contig5761:1554..15631681463798.7503145-UTR-Ecto-sp13_S_contig5761:1554..1563Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5761 1555..1563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463798.7387838-CDS-Ecto-sp13_S_contig5761:1212..15541681463798.7387838-CDS-Ecto-sp13_S_contig5761:1212..1554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5761 1213..1554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5761.16185.1prot_Ecto-sp13_S_contig5761.16185.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5761 1213..1554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5761.16185.1

>prot_Ecto-sp13_S_contig5761.16185.1 ID=prot_Ecto-sp13_S_contig5761.16185.1|Name=mRNA_Ecto-sp13_S_contig5761.16185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MISIFFDVLGMLEVRIKVELSNAQQLQEMQVLRSSCAPCSRDRKVRRVPL
ATSTRDGWRDRQLCRFSLPTRTNKWKPGAGLSQRQRVLGSGIAPRSRTRS
DVILVYIHERTTG*
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mRNA from alignment at Ecto-sp13_S_contig5761:1203..1563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5761.16185.1 ID=mRNA_Ecto-sp13_S_contig5761.16185.1|Name=mRNA_Ecto-sp13_S_contig5761.16185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=361bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5761:1203..1563+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGACGACAATATGATCAGCATCTTCTTTGATGTGCTTGGGATGCTCGAAG
TACGCATAAAAGTCGAACTTTCCAATGCTCAACAGCTACAAGAGATGCAG
GTCTTGAGATCTTCGTGTGCCCCATGCTCGAGAGATCGTAAGGTGAGGCG
CGTGCCTTTGGCGACATCGACACGGGACGGATGGAGGGATCGACAGCTGT
GTCGTTTCTCTCTGCCAACCCGAACGAATAAGTGGAAGCCTGGTGCCGGA
CTGAGCCAGAGACAACGAGTATTGGGATCAGGAATCGCGCCAAGATCTCG
AACGAGAAGTGACGTGATATTGGTTTATATTCACGAGAGGACCACGGGTT
GAACATGCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5761:1203..1563+

>mRNA_Ecto-sp13_S_contig5761.16185.1 ID=mRNA_Ecto-sp13_S_contig5761.16185.1|Name=mRNA_Ecto-sp13_S_contig5761.16185.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5761:1203..1563+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAGCATCTTCTTTGATGTGCTTGGGATGCTCGAAGTACGCATAAA
AGTCGAACTTTCCAATGCTCAACAGCTACAAGAGATGCAGGTCTTGAGAT
CTTCGTGTGCCCCATGCTCGAGAGATCGTAAGGTGAGGCGCGTGCCTTTG
GCGACATCGACACGGGACGGATGGAGGGATCGACAGCTGTGTCGTTTCTC
TCTGCCAACCCGAACGAATAAGTGGAAGCCTGGTGCCGGACTGAGCCAGA
GACAACGAGTATTGGGATCAGGAATCGCGCCAAGATCTCGAACGAGAAGT
GACGTGATATTGGTTTATATTCACGAGAGGACCACGGGTTGA
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