mRNA_Ecto-sp13_S_contig5757.16174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5757.16174.1
Unique NamemRNA_Ecto-sp13_S_contig5757.16174.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5757.16174.1 vs. uniprot
Match: D7FI19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI19_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.310e-36
Identity = 72/82 (87.80%), Postives = 73/82 (89.02%), Query Frame = 2 
Query:   20 MADVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGTEVSEVRDATSTASTRKRTKGAAATAGHDRDGDLAGDAPEG 265
            MA VIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAG E SEVRDA S A TRK TKGAAATAG +R GDLAGDAPEG
Sbjct:    1 MAVVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGAEASEVRDAMSIALTRKGTKGAAATAGPNRGGDLAGDAPEG 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5757.16174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI19_ECTSI2.310e-3687.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5757contigEcto-sp13_S_contig5757:2258..2911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size265
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463797.682107-CDS-Ecto-sp13_S_contig5757:2257..24161681463797.682107-CDS-Ecto-sp13_S_contig5757:2257..2416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5757 2258..2416 -
1681463797.6938615-CDS-Ecto-sp13_S_contig5757:2805..28921681463797.6938615-CDS-Ecto-sp13_S_contig5757:2805..2892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5757 2806..2892 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463797.709428-UTR-Ecto-sp13_S_contig5757:2892..29111681463797.709428-UTR-Ecto-sp13_S_contig5757:2892..2911Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5757 2893..2911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5757.16174.1prot_Ecto-sp13_S_contig5757.16174.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5757 2258..2892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5757.16174.1

>prot_Ecto-sp13_S_contig5757.16174.1 ID=prot_Ecto-sp13_S_contig5757.16174.1|Name=mRNA_Ecto-sp13_S_contig5757.16174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MADVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGTEVSEVRDA
TSTASTRKRTKGAAATAGHDRDGDLAGDAPEG
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mRNA from alignment at Ecto-sp13_S_contig5757:2258..2911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5757.16174.1 ID=mRNA_Ecto-sp13_S_contig5757.16174.1|Name=mRNA_Ecto-sp13_S_contig5757.16174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5757:2258..2911- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCACGGGCTTCTTCAAGATGGCCGACGTCATCGACGAGTGCCCGCCCC
TGGCAAAGCTCTTCGAGGGGGGCTTCCTAGAGAAGCGCTTCCAAGAAGTG
TTTCAGGTCAAGAGCCAGGGTGCTTACCCACCACTATACATGCATGCACT
GGATGGCGGTGTGTAGCCAGGCAGCCGCCATGTGTGTTTTAACTTTTCCC
CGCGTGCATCCTTGTGGCCGTCCCTGCTGTCAGATACCGGAGACTGTTTC
CTTGTTGTTGTTCAGTTGGTGAGCGTTTCGTTATGGGCCTCTGTTATCGG
GTGGCCCGAGCACGGCTAGAGCCTCATTTGTGTTCCTTGTCGTGGGTCTT
CCAAGTCAGCCACGGAGGACGCTCGGTGAACTGTTGGGTAGTTCCCCCCG
GGGTTTCCACATCCCGTGTGGCACAGCCGACGCCCTCGTGATGGTGTTGT
TTGTTTGTTTGTCATCAACTCGCGGCGGGATTCCGATATCAGCAGGTTCC
CAGCGCGGTGCTGGCAAGATCGGGGGCGGGAACGGAGGTCTCCGAAGTCC
GGGACGCGACGTCCACTGCATCGACAAGAAAGCGGACGAAAGGAGCCGCC
GCCACCGCCGGACACGATCGTGATGGTGATCTCGCTGGAGACGCGCCGGA
GGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5757:2258..2911-

>mRNA_Ecto-sp13_S_contig5757.16174.1 ID=mRNA_Ecto-sp13_S_contig5757.16174.1|Name=mRNA_Ecto-sp13_S_contig5757.16174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5757:2258..2911- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGACGTCATCGACGAGTGCCCGCCCCTGGCAAAGCTCTTCGAGGG
GGGCTTCCTAGAGAAGCGCTTCCAAGAAGTGTTTCAGGTTCCCAGCGCGG
TGCTGGCAAGATCGGGGGCGGGAACGGAGGTCTCCGAAGTCCGGGACGCG
ACGTCCACTGCATCGACAAGAAAGCGGACGAAAGGAGCCGCCGCCACCGC
CGGACACGATCGTGATGGTGATCTCGCTGGAGACGCGCCGGAGGGC
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