mRNA_Ecto-sp13_S_contig57537.16170.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57537.16170.1
Unique NamemRNA_Ecto-sp13_S_contig57537.16170.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57537.16170.1 vs. uniprot
Match: A0A6H5KIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC1_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.830e-70
Identity = 125/145 (86.21%), Postives = 129/145 (88.97%), Query Frame = -3 
Query:    3 GGWGEKVRRDDDKRLPPRRCHSLPASAASYGGDAGSSHLPLRDSLAWSCQYVEAREFDMSVAVSGGGGGI---GVLPHLNCSISGVSVSTAGYAPGGDVGDGRGGGVRRTSSLLEAAKKSASSPTPTPGGALPTSRAAKARQVDD 428
            GGWGEKVRRDDDK LPPRRCHSLPASAAS GGDAGSSHLPLRD+LAWSCQYVEAREFDMSVAVSG        GVLP+LNC+ISGVSVSTAGYA GG VGDGRGGGVRRTSSLLEAAK+S SSPTPTPGGALP   AAKARQVDD
Sbjct: 1249 GGWGEKVRRDDDKPLPPRRCHSLPASAASSGGDAGSSHLPLRDNLAWSCQYVEAREFDMSVAVSGXXXXXXXSGVLPNLNCAISGVSVSTAGYARGGGVGDGRGGGVRRTSSLLEAAKRSTSSPTPTPGGALPPFEAAKARQVDD 1393
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BLAST of mRNA_Ecto-sp13_S_contig57537.16170.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 4.100e-69
Identity = 124/146 (84.93%), Postives = 127/146 (86.99%), Query Frame = -3 
Query:    3 GGWGEKVRRDDDKRLPPRRCHSLPASAASYGGDAGSSHLPLRDSLAWSCQYVEAREFDMSVAVSGGGGGI----GVLPHLNCSISGVSVSTAGYAPGGDVGDGRGGGVRRTSSLLEAAKKSASSPTPTPGGALPTSRAAKARQVDD 428
            GGWGEKVRRDDDK LPPRRCHSLPAS AS GGDAGSSHLPLRDSLAWSCQYVEAREFDMSVAVSG         GVLP LNC+ISGVSVSTAGYA GG+VGDGRGGGVRRTSSLLEAAK+S SSPTP PGGALP S AAK RQVDD
Sbjct: 1073 GGWGEKVRRDDDKLLPPRRCHSLPASTASSGGDAGSSHLPLRDSLAWSCQYVEAREFDMSVAVSGXXXXXXXXSGVLPILNCAISGVSVSTAGYARGGNVGDGRGGGVRRTSSLLEAAKRSTSSPTPMPGGALPPSGAAKTRQVDD 1218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57537.16170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIC1_9PHAE1.830e-7086.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K0_ECTSI4.100e-6984.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57537contigEcto-sp13_S_contig57537:73..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size430
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463797.2991006-UTR-Ecto-sp13_S_contig57537:72..1421681463797.2991006-UTR-Ecto-sp13_S_contig57537:72..142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig57537 73..142 +
1681463797.3327675-UTR-Ecto-sp13_S_contig57537:397..5201681463797.3327675-UTR-Ecto-sp13_S_contig57537:397..520Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig57537 398..520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463797.310884-CDS-Ecto-sp13_S_contig57537:142..2941681463797.310884-CDS-Ecto-sp13_S_contig57537:142..294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57537 143..294 +
1681463797.322213-CDS-Ecto-sp13_S_contig57537:312..3971681463797.322213-CDS-Ecto-sp13_S_contig57537:312..397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57537 313..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57537.16170.1prot_Ecto-sp13_S_contig57537.16170.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57537 143..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57537.16170.1

>prot_Ecto-sp13_S_contig57537.16170.1 ID=prot_Ecto-sp13_S_contig57537.16170.1|Name=mRNA_Ecto-sp13_S_contig57537.16170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MTPTSSPPPARSLYGGHHPLGRHRRRRRERTRRLTPTPPRWSSLGEVGRR
YRRRRPTLPRSCQTLALQRTGMTRLGYL*
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mRNA from alignment at Ecto-sp13_S_contig57537:73..520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57537.16170.1 ID=mRNA_Ecto-sp13_S_contig57537.16170.1|Name=mRNA_Ecto-sp13_S_contig57537.16170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=448bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57537:73..520+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCGTCAACCTGCCGCGCCTTTGCTGCCCTGGAGGTTGGCAACGCTCC
GCCCGGAGTAGGGGTCGGCGATGACGCCGACTTCTTCGCCGCCTCCAGCA
AGGAGCTTGTACGGCGGACACCACCCCCTCGGCCGTCACCGACGTCGCCG
CCGGGAGCGTACCCGGCGGTTGACACCGACACCCCCGAGATGGAGCAGTT
TAGGTGAGGTAGGACGCCGATACCGCCGCCGCCGTCGCCGCCGCCGCCGC
CGCCCGACACTGCCACGCTCATGTCAAACTCTCGCGCTTCAACGTACTGG
CATGACCAGGCTAGGCTATCTCTAAGCGGGAGGTGGGAGCTGCCGGCATC
GCCGCCGTAGGAGGCCGCGGACGCGGGAAGGCTGTGGCACCGGCGAGGCG
GCAGCCGCTTGTCATCATCCCTCCGCACTTTCTCACCCCACCCGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57537:73..520+

>mRNA_Ecto-sp13_S_contig57537.16170.1 ID=mRNA_Ecto-sp13_S_contig57537.16170.1|Name=mRNA_Ecto-sp13_S_contig57537.16170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57537:73..520+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCGACTTCTTCGCCGCCTCCAGCAAGGAGCTTGTACGGCGGACA
CCACCCCCTCGGCCGTCACCGACGTCGCCGCCGGGAGCGTACCCGGCGGT
TGACACCGACACCCCCGAGATGGAGCAGTTTAGGTGAGGTAGGACGCCGA
TACCGCCGCCGCCGCCCGACACTGCCACGCTCATGTCAAACTCTCGCGCT
TCAACGTACTGGCATGACCAGGCTAGGCTATCTCTAA
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