mRNA_Ecto-sp13_S_contig575.16164.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig575.16164.1
Unique NamemRNA_Ecto-sp13_S_contig575.16164.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: D8LCG2_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG2_ECTSI)

HSP 1 Score: 566 bits (1458), Expect = 7.870e-199
Identity = 284/305 (93.11%), Postives = 291/305 (95.41%), Query Frame = 1 
Query:    1 MEAELGTPGVAEAGGGDGMLGGNVIERAPREAAAA----AWSDTRPLSEQLPTYPATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIEAELGFWGYLLASAHFVVLAEVFEKMFMHVLLRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRDDLGVGVAPLDWSNREWLEDWAAASA 903
            MEAELG PGVAEAGGGDGM+GGNVI+RAPREA       AWSD RPLSEQLPTYPATC L+AVLVTVFL MWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAH GLLHLAF+++SLWSCRRIE ELG WGYLLASAHFVVLAEVFEKMFMHVLLRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRDDLGVGVAPLDWSNREWLEDWAAA+A
Sbjct:    1 MEAELGAPGVAEAGGGDGMMGGNVIQRAPREAXXXXXXXAWSDARPLSEQLPTYPATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHGGLLHLAFSISSLWSCRRIETELGSWGYLLASAHFVVLAEVFEKMFMHVLLRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRDDLGVGVAPLDWSNREWLEDWAAANA 305
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: A0A4D9CU66_9STRA (Rhomboid domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU66_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.570e-40
Identity = 82/234 (35.04%), Postives = 131/234 (55.98%), Query Frame = 1 
Query:  124 PLSEQLPTYPATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIEAELGFWGYLLASAHFVVLAEVFEKMFMHVLL------RTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDY 807
            P  + L   PAT    AVLV ++  +W  RVSA  +  SY N++ ++EWWR +TAA +H  L H+ FNV +LW CR  E  LG W +++ S   VVL+++     ++         R+    +  S GYS V+FAW+ +LS        ++G        + V +L++ ++++R++S VGH +G+ AGL+ + G LD+     YW      W +A+L  SLKATT +P+P ++Y
Sbjct:    5 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADKVSFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFIVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLSSP-YWGGCFLFWVVAMLAISLKATTGLPLPCLEY 237
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: W7TIX3_9STRA (Rhomboid protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIX3_9STRA)

HSP 1 Score: 159 bits (401), Expect = 7.790e-40
Identity = 86/249 (34.54%), Postives = 136/249 (54.62%), Query Frame = 1 
Query:  124 PLSEQLPTYPATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIEAELGFWGYLLASAHFVVLAEVFEKMFMHVLL------RTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVD---LSGRDDLGVG 843
            P  + L   PAT    AVLV ++  +W  RVSA  +  SY N++ ++EWWR +TAA +H  L H+ FNV +LW CR  E  LG W + + S   VVL+++     ++         R+    +  S GYS V+FAW+ +LS        ++G        + V +L++ ++++R++S VGH +G+ AGL+ + G LD+     YW      W +A+L  SLKATT +P+P ++Y     + G +  GVG
Sbjct:   95 PFLQDLLLTPATAVTCAVLVVIWFFLWNHRVSADRVAFSYTNVVEKKEWWRCLTAAHSHLDLAHIGFNVIALWDCRSAELWLGHWRFAVQSLALVVLSKLIMLAVVYFASSCLPAPRSRAWQEGGSVGYSAVIFAWMTILSFYGPPTVSLLGLVEIPSLLAPVASLLITQLIVRRASLVGHASGIVAGLIAALGTLDWLNSP-YWGGCFLFWVVAMLAISLKATTGLPLPCLEYAGWGAVGGEERAGVG 342
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: A0A7S2V9M1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9M1_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.820e-38
Identity = 81/239 (33.89%), Postives = 138/239 (57.74%), Query Frame = 1 
Query:  124 PLSEQLPTYPATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIEAELGFWGYLLASAHFVVLAEVFEKMFMHVLLRTGR------VVDEVSCGYSGVVFAWIVVLSLRPD--APARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDL 816
            PL  Q+   P TC +    + +++     R+ A S+G SY  ++   E+WR++TAAV+H+   HL FNV S+W+ R +E ++G W YL  S   ++LA  +    +  ++ + R        D+VS GYS V+F  + VL+   +   P ++  G       + +  +++ +++ RQ+SF+GHL+G+ AG++ ++G LD+  +  YW     AW  AVLL SLKATT +P+P +DYV++
Sbjct:   30 PLISQIINSPMTCVVIMSCIAIYVNQRANRIGADSVGISYTRVVKGMEYWRILTAAVSHANFWHLLFNVYSVWNIRLLEWKIGGWEYLCHSMLILLLARTYHFTLLWRVISSTRNPVLQSYADQVSLGYSAVIFGLMTVLATTEENMGPYQLPLGLQVEAPLAPMAAMIITQLVYRQASFLGHLSGMLAGVMVASGLLDWCLQP-YWVAWGCAWGTAVLLVSLKATTNLPVPFVDYVNI 267
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: A0A8J9S0I8_9CHLO (Probable rhomboid-related protein 4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S0I8_9CHLO)

HSP 1 Score: 122 bits (305), Expect = 1.220e-27
Identity = 75/240 (31.25%), Postives = 126/240 (52.50%), Query Frame = 1 
Query:  151 PATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIE-----AELGFWGYLLASAHFVVLAEVFEKMFMHVL---LRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRDDLGVGV 846
            PAT  ++ +L  V+  +    +  A +G +Y   + + E WR+VTA ++H  LLHL FNV++LWS   +E     A  G   YL  S   ++ + +   +F HVL   LR  + ++  + G+S V+F W+ +LS    A   V G      + +   +LV+  I+I ++SF+GHL+G+  G + ++G LD+     +W L L AW  A+L+  L  +  + +P +  V   G  D+  GV
Sbjct:   13 PATSVVSTLLAAVYFYITSHGIGYAEVGLNYEQAVQKLELWRIVTAQLSHIELLHLLFNVSTLWSLGVVEESGLGARSGTLYYLRISLVLLIFSGLVCLLFYHVLGVVLRREQFLNVTTVGFSAVIFGWMTILSRSGVASFSVFGLANIPMWLTPFASLVLTSIIIPRASFLGHLSGIVVGYMVASGVLDWLTL--WWLLSLTAWTAALLVFHLVRSGRLEVPWLRMVPSDGAGDIETGV 250
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: A0A0G4III9_PLABS (Rhomboid domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4III9_PLABS)

HSP 1 Score: 115 bits (289), Expect = 1.910e-25
Identity = 77/250 (30.80%), Postives = 129/250 (51.60%), Query Frame = 1 
Query:  100 AAAWSDTRPLSEQLPTYPATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSC-RRIEAELGFWGYLLASAHFVVLAEVFEK----MFMHVLLRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASV-VLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALD-FAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRD 828
            A  W D       L  +P T    AV   +++  W  R   A + SSYR +++ ++ WR +T+  +H  +LHLAFN++  WS  ++ E+++G   +   +  F+V++         + +H + + G   D+ S GYS V+FAW    S++         G V +    V +L L+  ++LI  +SFVGHL+G+ AGLLF    LD F+    Y+ L    W +  +  S+K TT +P+P +  +D +G D
Sbjct:    2 AGIWHD-------LVRWPLTSATVAVCFVLWVWHWNSRSDLARVASSYRRIVIEKQVWRCITSTYSHGSVLHLAFNMSMAWSQGQQFESQIGTVEFARVTTLFIVVSSCLSLGATWLLVHRMNQPGAA-DKQSVGYSAVLFAWYTAGSMQDPWTTLYFLGIVPTPRIVVPILALLFTQLLIANASFVGHLSGIVAGLLFG---LDLFSWFTTYFFLCSLTWIVIGMSWSVKTTTNLPVPFLVMLDNTGHD 240
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: I0Z371_COCSC (Rhomboid-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z371_COCSC)

HSP 1 Score: 114 bits (286), Expect = 4.460e-25
Identity = 76/246 (30.89%), Postives = 126/246 (51.22%), Query Frame = 1 
Query:  136 QLPTYPATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIE------AELGFWGYLLASAHFVVLAEVFEKMFMHVL---LRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRDDLGVGV 846
            Q+   PAT  ++ +L  V+L +    +  A +G +Y   + + E WRV+TA V+H  LLHL FN+++LWS   IE      A+ G   YL  S   ++ + +   +F HVL   LR  +     + GYS V+F W+ +LS    A   V G      + +   +LV+  I+I ++SF+GHL+G+  G + ++G  D+     +W   L AW+ A+L+  L     + +P +  +   G  D+  GV
Sbjct:    4 QVVERPATSLVSTLLTAVYLYITSHGIGYADVGLNYDQAVQKLELWRVLTAQVSHVELLHLLFNLSTLWSLGVIEESNGNGAKGGTRYYLQTSLVLLIFSGLVCLLFYHVLGVVLRREQYHTVTTVGYSAVIFGWMTILSRTGVASFSVFGLANIPMWLTPFASLVLTSIIIPRASFLGHLSGIVVGFMVASGVFDWLTL--WWLGSLLAWSGALLVFHLVRIERLEVPWLRMMPSEGAGDIETGV 247
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: A0A2P6V6P8_9CHLO (Rhomboid family n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V6P8_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 2.950e-24
Identity = 77/227 (33.92%), Postives = 123/227 (54.19%), Query Frame = 1 
Query:  151 PATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIEAELGFW-GYLLASAHFV-VLAEVFEKMFMHVL---LRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVL------NLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATT---TIP 789
            PAT  +A +L+ V+L++ +R +S A +G SY  ++  +E WR     VAH   +HLAFN+++LWS   ++   G   GY L +   + +L      +  HVL   L+  +  D  + GYS V+F W+ +L+ R      ++  F   G ASV +      +L++  +L+ ++SF+GHLAG+ AG   + G L +     YW++ L AWA A+L G   A T   TIP
Sbjct:   14 PATTAIALLLLAVYLLLHQRHLSYADVGLSYDRVVTHRELWRCAACQVAHLDFIHLAFNLSTLWSLGLVKRTSGLGPGYFLHTTVLLFLLCPAICVLLYHVLIVALKREQYRDVTAVGYSCVLFGWMTLLATRQPGGITMLPLF---GLASVPMWLTPWASLLITSLLVPKASFIGHLAGILAGYAAAFGLLSWLSP--YWTVSLVAWA-ALLTGHAAARTQQLTIP 234
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: A0A482R695_9EURY (Rhomboid family intramembrane serine protease (Fragment) n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R695_9EURY)

HSP 1 Score: 113 bits (283), Expect = 5.500e-24
Identity = 71/231 (30.74%), Postives = 116/231 (50.22%), Query Frame = 1 
Query:  106 AWSDTRPLSEQLPTY----PATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIEAELGFWGYLLASAHFVVLAEVFEKMFMHVLLR---TGRVVDEVSCGYSGVVFAWIVVLSL-RPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKA 774
            +WS     S  L T     P +  + A    ++ V+W  R   A +  SY  ++V ++ +R VTA   H G+LHL FN+TSL++   +EA  G + Y   +   +++AE+     +  L R       +++ + GYSG++F W  +++   P A    +G      + S   +L ++++L+  +SFVGHL+G+ AG L +  A  FA    YW   L AW     L SLKA
Sbjct:   30 SWSSIMASSSTLLTLLQAAPVSVSIGAACCVIWFVIWNWRFDIAPLAVSYNAVVVDRQLYRAVTACFVHGGILHLVFNMTSLYAISGVEAAAGSYFYTKTTLLLLLVAELVSIALVSTLARWWGMTSALEQRAVGYSGILFGWSAIIAKWNPTAQVAFMGLIPMPAWVSPFASLFLIQLLVPNASFVGHLSGIIAGFLIAFNA--FAWLTGYWFWTLVAWMSVACLLSLKA 258
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BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Match: E1Z8E6_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8E6_CHLVA)

HSP 1 Score: 114 bits (284), Expect = 7.940e-23
Identity = 78/243 (32.10%), Postives = 127/243 (52.26%), Query Frame = 1 
Query:  151 PATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHSGLLHLAFNVTSLWSCRRIEAELGFWGYLLASAHFVVLAEVFEKMFMHVLLRTGR---VVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVL------NLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTTIPIPLIDYVDLSGRDDLGVGVAP 852
            PAT  LA +L   + ++  R +    +G SY  ++V +E WR   + +AH  L+HLAFN+++LWS   +E  LG   YL  +A   +L+     +  H+L+  G+     +  + GYS V+F W+ +++        ++  F   G AS+ L      +L++  +LI ++SFVGHLAG+ AG   + GA  F+  + +WSL L AWA    +G   A       +I Y+ L G    G+G +P
Sbjct:  458 PATSALALLLTVAYALIQWRHLGYPDVGLSYDRVVVHRELWRTAASQLAHIDLVHLAFNLSALWSIGLVERTLGTLHYLQHTALLFLLSPAICILIYHLLIVVGQREQYREVTAVGYSCVLFGWMSLMATSKPGGITMLPVF---GLASIPLWATPWASLLITSLLIPRASFVGHLAGMLAGYAVALGA--FSWLNPWWSLSLLAWAA---MGLSYAAARSRQLVILYIRLPGGAAFGLGGSP 692
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig575.16164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCG2_ECTSI7.870e-19993.11Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
A0A4D9CU66_9STRA4.570e-4035.04Rhomboid domain-containing protein n=1 Tax=Nannoch... [more]
W7TIX3_9STRA7.790e-4034.54Rhomboid protein 2 n=1 Tax=Nannochloropsis gaditan... [more]
A0A7S2V9M1_9STRA1.820e-3833.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J9S0I8_9CHLO1.220e-2731.25Probable rhomboid-related protein 4 n=1 Tax=Coccom... [more]
A0A0G4III9_PLABS1.910e-2530.80Rhomboid domain-containing protein n=1 Tax=Plasmod... [more]
I0Z371_COCSC4.460e-2530.89Rhomboid-domain-containing protein (Fragment) n=1 ... [more]
A0A2P6V6P8_9CHLO2.950e-2433.92Rhomboid family n=1 Tax=Micractinium conductrix Ta... [more]
A0A482R695_9EURY5.500e-2430.74Rhomboid family intramembrane serine protease (Fra... [more]
E1Z8E6_CHLVA7.940e-2332.10Uncharacterized protein n=1 Tax=Chlorella variabil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig575contigEcto-sp13_S_contig575:14163..21653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score566.6
Seed ortholog evalue6.9e-159
Seed eggNOG ortholog2880.D8LCG2
Model size1695
Hectar predicted targeting categorysignal anchor
Exons8
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-26_004890.1
Cds size906
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig575.16164.1prot_Ecto-sp13_S_contig575.16164.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig575 14163..20864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463796.7141414-CDS-Ecto-sp13_S_contig575:14162..143481681463796.7141414-CDS-Ecto-sp13_S_contig575:14162..14348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 14163..14348 +
1681463796.7250242-CDS-Ecto-sp13_S_contig575:15982..161461681463796.7250242-CDS-Ecto-sp13_S_contig575:15982..16146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 15983..16146 +
1681463796.7361608-CDS-Ecto-sp13_S_contig575:16557..166771681463796.7361608-CDS-Ecto-sp13_S_contig575:16557..16677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 16558..16677 +
1681463796.7487788-CDS-Ecto-sp13_S_contig575:17936..180091681463796.7487788-CDS-Ecto-sp13_S_contig575:17936..18009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 17937..18009 +
1681463796.7578118-CDS-Ecto-sp13_S_contig575:18630..187221681463796.7578118-CDS-Ecto-sp13_S_contig575:18630..18722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 18631..18722 +
1681463796.7671204-CDS-Ecto-sp13_S_contig575:19568..196971681463796.7671204-CDS-Ecto-sp13_S_contig575:19568..19697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 19569..19697 +
1681463796.8057597-CDS-Ecto-sp13_S_contig575:20159..202161681463796.8057597-CDS-Ecto-sp13_S_contig575:20159..20216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 20160..20216 +
1681463796.822373-CDS-Ecto-sp13_S_contig575:20779..208641681463796.822373-CDS-Ecto-sp13_S_contig575:20779..20864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig575 20780..20864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463796.838998-UTR-Ecto-sp13_S_contig575:20864..216531681463796.838998-UTR-Ecto-sp13_S_contig575:20864..21653Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig575 20865..21653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig575.16164.1

>prot_Ecto-sp13_S_contig575.16164.1 ID=prot_Ecto-sp13_S_contig575.16164.1|Name=mRNA_Ecto-sp13_S_contig575.16164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
MEAELGTPGVAEAGGGDGMLGGNVIERAPREAAAAAWSDTRPLSEQLPTY
PATCFLAAVLVTVFLVMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAH
SGLLHLAFNVTSLWSCRRIEAELGFWGYLLASAHFVVLAEVFEKMFMHVL
LRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLN
LVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALA
VLLGSLKATTTIPIPLIDYVDLSGRDDLGVGVAPLDWSNREWLEDWAAAS
A*
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mRNA from alignment at Ecto-sp13_S_contig575:14163..21653+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig575.16164.1 ID=mRNA_Ecto-sp13_S_contig575.16164.1|Name=mRNA_Ecto-sp13_S_contig575.16164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig575:14163..21653+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCAGAGCTGGGCACACCTGGTGTTGCCGAGGCCGGGGGAGGAGA
CGGAATGCTGGGGGGGAACGTCATAGAGAGAGCGCCGCGAGAAGCAGCCG
CCGCGGCTTGGTCGGACACCCGTCCGCTCTCGGAGCAGCTACCGACCTAC
CCGGCTACTTGCTTTCTGGCCGCTGTGCTCGTGACGGTGAGCACGGGAAG
AAGCTTTGCGCAAAGTGCAGACATAATGCGAGGATGCATCTTTCGTCCAC
TACAGCGTCAAAGTTACACACCCGAACGCGTTGAGATCGGAGAATCTGCC
ATTTTCCTCCTGCGGAACGGATCTCTGTATGCATACGTAAATTGACGTAA
ATTGGTTATGGACTTTTAGCTACGTATCACACACTCTGTTGAGCTCGCGG
AACACCTTTGGTGTGCAATGTTTTGCTGGCACTTTTTGGGTATGCGCCAA
ACAAAGTCGATGTTGCTAGCGAGCGTCGGGCGTAAGTTGCGCCGGTATGC
AAGTGGTTGTTCGGTAATCGGGTCTGTCTCCAGATGTAGGTGTCGACTAG
CTGTATATAACTGTAAGAACAACCTCCCGGCTCACGGAGTCCCGACCGTC
AGTGCCACATGAGCAGAGGACATCGCGGAGCAGCAACATGCGCGTGGGCA
CGCTCAGATCTTATTGCTGAGGCCGCATGCATACTACTTGAAACTACCGA
AAATCACGAGCCAGGTCCAAAAACTCCGCAATTCTGGATCCAACCCAAAT
CACCGATTCATCCCCAGTCCCCTTCACTACGGGATCGTCAAAGGCATCTG
CATGGTGCTGTGAGCTATGATACTTCCTGTTCGCCCTCAGCCTTCGGTAG
GTTAGGTCTGCGAAGGCGGAAGTGTAGCAAAGTAGGGCCCATGTGTTGCG
GACCTTTCGAGCCGCAGCTGCAGCCTGCGACAGCAGTCCAAGTCTACAGC
ATATCTGAGCGTACCATCGCGCACCTACCTGCTCCATGCTGCCCTCTTAC
AACAGGCACAAGGGCAAGGGCACTTCGGGTCGGGACTCCGACCATTGGCA
AATGAGTCTGTTGGGAGAACCCGCCGTGTCGGCTGCATTTTGTCTTGAAA
CTGCAGTAAACCTGTGGAAGTATTTCTCTTGGTTTGAGAGCAGGGTGTGC
GGAGGATCAAATAAACTACTTACCCATTAAATGCCGGTGAGACAACCTAC
GGACTTTTTTCAACCAACGAACTTTTTGTTGTTACCCAACACGCTCCAAC
TGGTATTTTTATGTACTCCGTCGGACAGGGCTTCAGCAGTGGCACAGCAA
GCGGTTTCGTGGATCCATGGCCGGTACAATTGGGAAGCCACTGCATCGCC
CCCCCCCCGGTGTTAATGATTTTCTGTGAGCAAGGACTCATGTTGCTCCT
GCGTCAGCTCTTCAACGCCTTTCTCTCTGAAATACCAGCCTGGCGCATAG
TTTCGCACGCGACAAAAGTCTATAGATACGGCATCTAACAAGAAGCCAGA
TTATCATTCGTTGATGTTTTGTGTGGGGCACATCGTTCGTTTCGCGATAA
AGATCTACGGCATCTAATAATAAAGACGCCAGTAATAGGTGACCATTCGG
TGATGTTCTGTGTTGTTTCGAAAACGATATCACCGCTCCGGTGTCTCCCA
AGGGGACACGATCGAACAACCAAACGCCCCTTGTGTGTCGGATGATCTAC
CTCGAACAACCCGAAATGTGAAAACGACAACAAATACGACAACGACGATG
GAATGTCACGTAACCCCCCCCCCCCTCTACGACACAAACCCCAAACGGCG
CCTGCGGCGGAGATTTCCAGGTTTTCCTTGTGATGTGGAGGAGGCGTGTG
TCGGCGGCCTCGATGGGGTCGAGCTACCGGAACCTCTTGGTGCGGCAGGA
GTGGTGGCGGGTGGTGACGGCCGCCGTCGCCCACAGCGGGCTGCTGCACC
TCGCGTTCAACGTCACATCCCTGTGGTCCTGCAGGTGGGTGTGTTTTAAT
GCTCTTTGATAGCGGGGTTTGTTTCCATGCGCTTGCTGAGGCTTTTGATG
CGTTTTTTTTTGTGTCGTTGTTGTGGGACTTTTCTTTCGTCGTTGTATCG
TTATCGGTTGTGCTACACTGTAGGCTTGTCAACCTTTTCCATGCCCTTTT
TTTCCGCGGATTCCACCGACTGTGTAGCCTCGCTTTGGATGGTTTGGCCT
TCTAGTTTCTAGTCTACGGAAAAGAACACGGCACAAGCACTACGAAGCAG
GCGGGGAACGGGTTGCGTTTTTTAACGGAACGTGCGGCGTGTTCCTGTGC
GTCTCTCTCACCCTCTCCTGCTCTCACTCTTGCCCCCCCCCCCCCCGCCC
ATTATTTTTCTCTCTTGGACGAAAACGATTGGCTGTGCTTCTCAGGAGGA
TTGAGGCGGAGCTTGGCTTTTGGGGTTACCTGTTGGCTTCGGCGCACTTC
GTTGTCCTCGCTGAGGTGTTCGAGAAGATGTTCATGCACGTCCTGCTTAG
AACCGGCCGCGTTGTGTGAGTCTCGCCGTGTTTTCGCTGCCAAATTTCGT
CTAGCAGCAGTCCTACTATATTTGCTGTTGATTGTTCTTCTTTTTTTCTC
AATTGTTCGATGTGCTTACCAAGAACAAGGAGACGATCACAAGGCTGTCG
CGCTGGACCATACATATCTATGACCAGTTGCAATGCTGCTTGCTAGTTTA
GTGTTTGCCTTGTTTGGGGAAAGATTGCCGTCAGGCAGTAATTTGCTTTT
CGTTGAGTGGCTTTTTTTTGTGAAGACAACAACAACAACAACAACGACAA
CGACGGTGTCGATTTGCACTTATCTCGCCCGGCTCGTTCAGACGTAACAA
TACTTGCAATATCATATCCAAACGGTAGATGGATGTGCAACAGCAGTTAC
GCTGTTATATCCAGAACAGTGTTTATGTTCTGTTTTGATGGGGCTATAGG
GACAGTTTTTTGGGGGTGAGGTGGCGACGTCTTCATGTTGATAATCACGT
CAATCGCCACACTGTTACCAATACCATCAGCCACAGAGGAGGAGGTTGGT
TCATTCATGTCACGCTCTGATGATGAGGCGCACGCCGTGTGTCCTGGTCA
CTGAGAGGAAGGCCGAAGATGACCGCACCTCGAAGTTTTTCTTGACGACC
CAAACAAAAGACAAGAGGGGCATCGACGAGCCTTCAGGAGGGGCCGAGGA
ACCATCTCAAGCAGCCTGTTTTGTGACGAAAGCTAAATTCGTATGGTACG
TACGGCAGCCGAACCCTACTCACAAAGAGGGACAGTTCTCTCTCCCAGAT
ACGTTGTCGGAGATTTCGTGTCGGAGATCACATAGATTTGTTCCTGCCGC
ACGGCCACGTCTTGAGAAGCCAGGGGGGGGGTGAATTTTGGCGTTCGCAA
CGAATAAGTTGTTCTGAGCACCAAATACTGTGACAGCCATCGCTTACGTG
CGTCGTAGCGGCTACCATCGATCGAAAGATTATGTGTCTTCTGTCTAGCT
CGACTGGACCACAAGGATGAATGGTGCCAAGAGCCCCAGAGCAAGACAAG
CACCAAACATCACCGTGGAGACATCCCTTCGCCACCCCCACTTCGCCATC
GATTTTAGTTGAGATACCCCTTTCGCCACCCCCACATCTCCGCCGATTCT
GATCGAAACACCTTCTTCCCTCTCGCTCCCCTGCGAAAACCTTCTCGCCG
GACAACAACGCACCGCAATCTTGACGTGGGGATGAAAAAACCCTCAATGC
CGCCGGAACGACAAAAAAAAAAAGCGATGAGGTTTCGTGCGGATATTCCG
GGGTCGTCTTCGCGTGGATAGTCGTTCTCTCGTTGAGGCCAGACGCGGTG
AGCAAAAAAAGACAAACGAAGGCTTGGGGGGTCTTGTTGTTGTTCTTGTC
GTTGTTGTTGTCGTTGACAGCGTTGCACGCACGATAGGCTGGGTCACGTA
CGAATATTGGTCCCCATGCGCTCTTGCTGCCTTGTTTTTTTTTCAAGTTC
AGGAGATACCCGGCGGTTGTTACCCTTCAGCAGCAGCAGCAGCAGCAGCA
GAGCGGTTAACAAGGACGAGCGTTGGTGCGCCACGTGCTCATTCTGTTCG
CGACATGTTGCTTTCTTACCCTCACCTCTTGCGAGCACGCTTATCCGTCG
AACGCCTCATCTGTATCCAGCAAGCGGGGCCGAAACTCGCACGTACACAC
CGGCTGATCATTTTAACGTGCGCCGCGTGTTGCGGTCAGCCGTCGAAACA
CACTACCCATGAGTTGTGGTGTTTGTAGCAACGTCTTTCACCTATTCGTG
TTTTTGGTGTCTAGGTTTTTCTCCGACTGACCCCCCCATCCGTGCGTTGC
CCCCCACCCTCCTCTGTGCCATGCCCTTCTGCTCGTCTTTGATGCTTGCT
TCTTGCCCCCCTGGCTGCGCACTTGGCGCGGGACTCATTTTTTTTTCGGT
GAAAAAAACAAAAAACAGCCGGCGCGAGTCATCGGGGGGTTCGTGTTCAG
CGGTTTCGCAAGCGTCGTCTTGAACTTGGTGGTTGTCCGAATTCTGATAC
GCCAATCAAGGTACATCTTCCATGTTTTTTATTTTTATCCTGATGTGTTT
TTTATTTGCGCGCGCGACAAACTCGGCAGGAGCACGATCCTAGGCCGATC
ACGGGTGATCCTGTGTCTGTTTTTGTTTCTATGTTTTTGCTCTCTACAGT
CGTGTGTTTGGTGCTGTTGGCAAAATGCGTGCGTATGAGCGCGTCGGTGG
GTGTATCGGTACTTGGTTGTACGGACGTGTGCTGCCTGCGAAGACTACGT
TGTTGTATACATAGCTTTGTTTGTTGCTTGGGGCCAAGGAGGACAACGGG
AACCGGAGGAGGGGAGGGAGGGGGCGCGTGTGGCACTGTTGCTGCTGCTT
CGAGTAGTTGTTCGGAGCATTGGTCCCTCACCGTCTCTGTCGAGATGCAA
CACAGCTCCATCGTATCGCTCAATTTCTCAGGGGTGGCTGGGGGGTGATT
CCCGGGTGTTTGTCTGCCGTTTCAACGGGCCTGGGCAGTCAGGATCCGTC
AGTGTTGTCGGAAACAATGACGAGAAAACGTCTCAAACTAAGTTTGGTGG
TATTCGTTGAGCGGTTCTCCACATGCTTCGTCTTGCTCATCGTGGTCTGC
TCATCAATATTCTTCACACCATGAATCCGATGCATTTATGAATGATCCCC
ATGCAAAGAAGAGTGCTATGTTGGTCCTCTTCTTGTCCTTCACTTTATTT
ATCTACCATCGACGCCACTTTCACAGAGGATATAAATCATCCTCGACGGA
CGTACGGGCGCTGGGGAAATGAAACCCTGTTTTGAAGACGCCAACACCCG
CTTTTATGTGAAACCATTTTTTTTTTCCCGTCAAATCTCTATTTTTTTTC
TGACAGTTTCGTCGGGCACTTGGCGGGGGTGTGGGCGGGACTGTTGTTCT
CCACCGGGGCGCTAGACTTCGCCAGGGAAGACCGTTACTGGAGCTTGGGC
CTAGCCGCCTGGGCACTCGCGGTGCTTCTCGGCAGGTGGGGAAATGAGCT
GTCGCTGTGGTCTCTCGAGTGCAATTGGCCACGGTTACCGGCTGGCTCGA
CCTAGGCAGCAAAGTCCGGACATGTACGCAGCACCTTGCATCCCTACACG
TACATTGGTGAACGGCATGCGAAGCAGTGTGTGTGCGTGTGTGTACGATT
TTATTCATTTAGCATTGGTACGGCTCTCACCGACTTACCAATGACAAGAC
GCCGGTCTCTGGATGGATAGCGTGTGTTGGTGTCCGCTGGTACCGCTGTC
TTTTCACGAGCTGCGAGCGAAGCCAGACTTGTGGAGTATTTCTCCTCTTT
CTTTTTTCGAGCTTTCACTCTTCTACATACCTCGATTCAGCCGCAGCCGT
TTCTCCTCGACCCGACCTTTCATCATTTTTTCTGGTGCTAATCATCGTGT
GCAATTCGTCCCACCGACCGCGGCCCTCCGCTCGCTGATTGGTCCAGCCT
CAAAGCGACAACGACGATCCCGATACCGCTCATCGACTACGTCGACCTGT
CAGGGTGAGTAGTGTTGTGACCTGGAGAGAGGGGGGGAATGGTAACTGCC
GGCGCGCGCCTTTTATTGCATCGTTCGCGTCGGCTTGGTGTAGTCAAAGA
GTGTCTTCCAGCTTGATTTTGGTGATGTTCGTGGTTGGTTGTGATTTCGA
TGGTATTATGGTCGTCGTCGTGAAGTCGTTGTTGTTGGTGACGGAACACG
ACCGGGTCTGTTCGCTTCGACGGGTCTCGCCACAAACCCAGGAAGCAAGT
TAGTATCTCATGATCAAGCCCACCGTTCACAGTCTGCAATGCCGCATACA
AAACAACCGTGGCCCTTGTCTTGTCCATGTGCACCCCCTTCTTCAAAGCC
GACGTACTCCTACCACGGCTGCCCGGGCATCGACCGACCATGTCCGGCGT
TACTCTCTGTGGGTTGTACCCCCGATGCCGCACGTTAGCCTCATGCGGCA
CTCAATCAGTCGAACCCCCGCTCTTCCTTCGTCGCAAAACGCGCACCCCA
AGTTTTCTGCGTCCCTGACTTCCCTTCCACGGCCCACGCGTGCACGTACC
GCCCTCCGAACTTGAAGGCGGGATGATCTGGGCGTTGGTGTTGCTCCACT
GGACTGGAGCAATCGAGAATGGTTGGAAGACTGGGCGGCGGCAAGCGCTT
GACTGCTGTTGGCAGTGCATGGCGCATTTTTGTCGCACCAAGCTTCTTCG
CGGCGATGTAGCAGCATCAGCAGCAAATATTTTACGTCTTTCGCGTCCCT
TTGTTTTTTTCGTCGTAAGAGTCCAATATTTGGAGGGTACAGGTTAACAT
TGTCGGTTGTGCATGGGCGCCCGCGCGCCTTTTTTCTTGGCAAAGCTTGA
CATCTCTACATCTTCCTCCTGATGAAGGTCGGAGCGATTCATTTGTACGT
AGACCATACATGATCGACACACACATGCCGCCGGCAATTTCTCTAGATAC
TCCCCAATCTGTTCGGATTTGGTGCTGTTGGGTTCGCTTGTAGGTATTCA
TGCACCTCCTTTTCGGTTTGGTTCGCTTTCGGGAGGGAGAGTCGACGACC
ACGACGATTCCCACCCCAACGTCGGGAATGCTCGGCTTGGCTTTGGCTAC
TTTTACCGTGTGATCGATTGCGTCGTTTGACGCAGTTCTTGCGGGGGAGA
AGGTTGGGGCGTAGAGCGAAGGGGAAAACGGCGAACGGACGCAAAGCCTC
GACCGGTGGCGGCTTTCGGTTGTGTTTTTATTGTTCTTGAGTCGTTCGTT
GTGTTTTCTCGGACGACTGGGAGATGGCGCAAGACTTTGTCGCCCTCGAA
TCTCTCGCTTCCGTTCCTGGCTGTGGAAAGCGCTTGTCGTTGGCAATCTT
TGAGATGGAAGACAGCAGTGTGCAACACTTTTCTCGGGTTCAAAAACCAA
ACGCAACCGCCGCAGGAGGGGTTGGGTAGGGGGACTCACGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig575:14163..21653+

>mRNA_Ecto-sp13_S_contig575.16164.1 ID=mRNA_Ecto-sp13_S_contig575.16164.1|Name=mRNA_Ecto-sp13_S_contig575.16164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig575:14163..21653+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGCAGAGCTGGGCACACCTGGTGTTGCCGAGGCCGGGGGAGGAGA
CGGAATGCTGGGGGGGAACGTCATAGAGAGAGCGCCGCGAGAAGCAGCCG
CCGCGGCTTGGTCGGACACCCGTCCGCTCTCGGAGCAGCTACCGACCTAC
CCGGCTACTTGCTTTCTGGCCGCTGTGCTCGTGACGGTTTTCCTTGTGAT
GTGGAGGAGGCGTGTGTCGGCGGCCTCGATGGGGTCGAGCTACCGGAACC
TCTTGGTGCGGCAGGAGTGGTGGCGGGTGGTGACGGCCGCCGTCGCCCAC
AGCGGGCTGCTGCACCTCGCGTTCAACGTCACATCCCTGTGGTCCTGCAG
GAGGATTGAGGCGGAGCTTGGCTTTTGGGGTTACCTGTTGGCTTCGGCGC
ACTTCGTTGTCCTCGCTGAGGTGTTCGAGAAGATGTTCATGCACGTCCTG
CTTAGAACCGGCCGCGTTGTCGATGAGGTTTCGTGCGGATATTCCGGGGT
CGTCTTCGCGTGGATAGTCGTTCTCTCGTTGAGGCCAGACGCGCCGGCGC
GAGTCATCGGGGGGTTCGTGTTCAGCGGTTTCGCAAGCGTCGTCTTGAAC
TTGGTGGTTGTCCGAATTCTGATACGCCAATCAAGTTTCGTCGGGCACTT
GGCGGGGGTGTGGGCGGGACTGTTGTTCTCCACCGGGGCGCTAGACTTCG
CCAGGGAAGACCGTTACTGGAGCTTGGGCCTAGCCGCCTGGGCACTCGCG
GTGCTTCTCGGCAGCCTCAAAGCGACAACGACGATCCCGATACCGCTCAT
CGACTACGTCGACCTGTCAGGGCGGGATGATCTGGGCGTTGGTGTTGCTC
CACTGGACTGGAGCAATCGAGAATGGTTGGAAGACTGGGCGGCGGCAAGC
GCTTGA
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