mRNA_Ecto-sp13_S_contig57458.16154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57458.16154.1
Unique NamemRNA_Ecto-sp13_S_contig57458.16154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A6H5K6R3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6R3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.710e-14
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELV 111
            MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELV
Sbjct:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELV 37
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A660UMP8_9BACT (30S ribosomal protein S16 n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A660UMP8_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.620e-12
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVRLMAEVPTP 138
            M VR+RLQR GRRNRPFYRVVVADSR+PRDGK+IE +     +P P
Sbjct:    1 MPVRIRLQRAGRRNRPFYRVVVADSRSPRDGKYIEKIGYYDPIPDP 46
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A7Z9ZXM2_9BACT (30S ribosomal protein S16 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7Z9ZXM2_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 8.220e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVRLMAEVPTP 138
            M VR+RL R+GRRNRPFYR+VVAD++APRDGKF+E++     +P P
Sbjct:    1 MPVRIRLMRMGRRNRPFYRIVVADAKAPRDGKFVEIIGHYDPLPDP 46
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A2H5YJA8_9BACT (30S ribosomal protein S16 n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5YJA8_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 9.640e-12
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    7 VRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVRLMAEVPTP 138
            +R+RL R+GRRNRPFYR+VVAD+RAPRDGKF+E++     +P P
Sbjct:    2 LRIRLSRMGRRNRPFYRIVVADARAPRDGKFVEIIGYYDPLPDP 45
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A836CM62_9STRA (Putative 30S ribosomal protein S16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM62_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.130e-11
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVRLMAEVPT 135
            M VR+RLQR G +N+PFYRVV AD+RAPRDGKFIE+V     +PT
Sbjct:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIVGTYNPIPT 45
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A7C2W2K7_9BACT (30S ribosomal protein S16 n=2 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7C2W2K7_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 3.990e-11
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVRLMAEVPTP 138
            M VR+RLQR GR+ RPFYRVVVADSR+PRDG+FIE +     +P P
Sbjct:    1 MPVRIRLQRAGRKKRPFYRVVVADSRSPRDGRFIEKIGYYDPIPDP 46
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A7C2PIK7_9BACT (30S ribosomal protein S16 n=2 Tax=Caldimicrobium sp. TaxID=2024963 RepID=A0A7C2PIK7_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 4.710e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIE 105
            M VR+RL R GRRNRPFYRVVVADSRAPRDGK+I+
Sbjct:    1 MPVRIRLMRFGRRNRPFYRVVVADSRAPRDGKYID 35
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A660RUT1_9BACT (30S ribosomal protein S16 n=1 Tax=Thermodesulfobacteria bacterium TaxID=2202153 RepID=A0A660RUT1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-10
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELV 111
            M +R+RL R+GRR RPFYRVV ADSRAPRDGKF+E++
Sbjct:    1 MPIRIRLMRMGRRRRPFYRVVAADSRAPRDGKFLEIL 37
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A524AQC4_9CHLR (30S ribosomal protein S16 n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A524AQC4_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 1.150e-10
Identity = 26/35 (74.29%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    7 VRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELV 111
            V++RL+R+GRRN+PFYRVVVADSR+PRDGKFI+++
Sbjct:    2 VKIRLRRMGRRNKPFYRVVVADSRSPRDGKFIDII 36
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BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Match: A0A7V6G138_9FIRM (30S ribosomal protein S16 n=1 Tax=Eubacteriaceae bacterium TaxID=2049045 RepID=A0A7V6G138_9FIRM)

HSP 1 Score: 59.7 bits (143), Expect = 1.380e-10
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVRLMAEVPTPI 141
            M VR+RL+R+G + RPFYR+VVADSRAPRDGKFIE +     V  P+
Sbjct:    1 MAVRIRLKRMGAKKRPFYRIVVADSRAPRDGKFIEEIGYYNPVSEPV 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57458.16154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6R3_9PHAE4.710e-14100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A660UMP8_9BACT2.620e-1269.5730S ribosomal protein S16 n=1 Tax=Candidatus Porib... [more]
A0A7Z9ZXM2_9BACT8.220e-1263.0430S ribosomal protein S16 n=1 Tax=Armatimonadetes ... [more]
A0A2H5YJA8_9BACT9.640e-1263.6430S ribosomal protein S16 n=2 Tax=Bacteria TaxID=2... [more]
A0A836CM62_9STRA2.130e-1166.67Putative 30S ribosomal protein S16 n=1 Tax=Tribone... [more]
A0A7C2W2K7_9BACT3.990e-1165.2230S ribosomal protein S16 n=2 Tax=Candidatus Porib... [more]
A0A7C2PIK7_9BACT4.710e-1182.8630S ribosomal protein S16 n=2 Tax=Caldimicrobium s... [more]
A0A660RUT1_9BACT1.050e-1072.9730S ribosomal protein S16 n=1 Tax=Thermodesulfobac... [more]
A0A524AQC4_9CHLR1.150e-1074.2930S ribosomal protein S16 n=2 Tax=Dehalococcoidia ... [more]
A0A7V6G138_9FIRM1.380e-1061.7030S ribosomal protein S16 n=1 Tax=Eubacteriaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57458contigEcto-sp13_S_contig57458:77..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score73.9
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D8LTT8
Model size141
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000313,GO:0000314,GO:0003006,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019866,GO:0019904,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.ribosomal protein s16
EggNOG OGsCOG0228@1,KOG3419@2759
Cds size141
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463795.863437-CDS-Ecto-sp13_S_contig57458:76..2171681463795.863437-CDS-Ecto-sp13_S_contig57458:76..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57458 77..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57458.16154.1prot_Ecto-sp13_S_contig57458.16154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57458 77..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57458.16154.1

>prot_Ecto-sp13_S_contig57458.16154.1 ID=prot_Ecto-sp13_S_contig57458.16154.1|Name=mRNA_Ecto-sp13_S_contig57458.16154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELVRLMAEVPTPI
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mRNA from alignment at Ecto-sp13_S_contig57458:77..217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57458.16154.1 ID=mRNA_Ecto-sp13_S_contig57458.16154.1|Name=mRNA_Ecto-sp13_S_contig57458.16154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57458:77..217- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGTGCGCGTACGGCTGCAGAGACTCGGTCGCCGTAACAGGCCCTT
CTATCGAGTCGTGGTAGCGGACTCAAGGGCGCCCAGGGACGGGAAATTCA
TTGAGCTGGTAAGGCTAATGGCGGAGGTCCCAACTCCAATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57458:77..217-

>mRNA_Ecto-sp13_S_contig57458.16154.1 ID=mRNA_Ecto-sp13_S_contig57458.16154.1|Name=mRNA_Ecto-sp13_S_contig57458.16154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57458:77..217- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGTGCGCGTACGGCTGCAGAGACTCGGTCGCCGTAACAGGCCCTT
CTATCGAGTCGTGGTAGCGGACTCAAGGGCGCCCAGGGACGGGAAATTCA
TTGAGCTGGTAAGGCTAATGGCGGAGGTCCCAACTCCAATC
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