mRNA_Ecto-sp13_S_contig57439.16153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57439.16153.1
Unique NamemRNA_Ecto-sp13_S_contig57439.16153.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: D7G154_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G154_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.580e-42
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            R FHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE
Sbjct:   42 RMFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 110
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: A0A6H5KW20_9PHAE (UBC core domain-containing protein n=5 Tax=Ochrophyta TaxID=2696291 RepID=A0A6H5KW20_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 9.780e-42
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            R FHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE
Sbjct:   75 RMFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 143
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: A0A1Z5KB46_FISSO (Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB46_FISSO)

HSP 1 Score: 132 bits (333), Expect = 1.370e-38
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNPASPANSEASRLY ENRREYNRRVRE
Sbjct:   47 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSEASRLYNENRREYNRRVRE 115
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: B8CAB3_THAPS (Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillariophyta TaxID=2836 RepID=B8CAB3_THAPS)

HSP 1 Score: 132 bits (333), Expect = 3.170e-38
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNPASPANSEASRLY ENRREYNRRVRE
Sbjct:   75 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPASPANSEASRLYNENRREYNRRVRE 143
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: A0A4D9CYF5_9STRA (UBC core domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYF5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.530e-37
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            + FHPNIYN+GQICLDILQNQWSPIYD+ AILTSIQSLLCDPNPASPANSEASRLYQ+NRREYNRRV+E
Sbjct:   75 KMFHPNIYNDGQICLDILQNQWSPIYDVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKE 143
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: K3WSJ4_GLOUD (UBC core domain-containing protein n=37 Tax=Oomycota TaxID=4762 RepID=K3WSJ4_GLOUD)

HSP 1 Score: 129 bits (325), Expect = 5.220e-37
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNP SPANSEA+RL+QENRREYNRRVRE
Sbjct:   75 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQENRREYNRRVRE 143
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: F0WM57_9STRA (Ubiquitinconjugating enzyme E2 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM57_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.820e-37
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            + FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLLCDPNP SPANSEA+RL+QENRREYNRRVRE
Sbjct:   93 KMFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLCDPNPNSPANSEAARLFQENRREYNRRVRE 161
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: A0A7S3K6N8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6N8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 8.280e-36
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    7 FHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            FHPN+YN+GQICLDILQNQWSPIYDI AILTSIQSLL DPNPASPANSEASRLY ENRREYNRRVRE
Sbjct:  102 FHPNVYNDGQICLDILQNQWSPIYDISAILTSIQSLLSDPNPASPANSEASRLYSENRREYNRRVRE 168
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: F0YDU2_AURAN (UBC core domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU2_AURAN)

HSP 1 Score: 126 bits (317), Expect = 1.360e-35
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            R FHPNIYN+GQICLDILQNQWSPIYDI AILTSIQSLL DPNPASPANSEAS+L+ ENRREYNRRVRE
Sbjct:   75 RIFHPNIYNDGQICLDILQNQWSPIYDISAILTSIQSLLSDPNPASPANSEASKLFSENRREYNRRVRE 143
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BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Match: A0A8J2SZI0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZI0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.180e-35
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANSEASRLYQENRREYNRRVRE 207
            R FHPN+YN+GQICLDILQNQWSPIYDI AILTSIQSLL DPNPASPANSEASRLY E+RREY+RRVRE
Sbjct:   75 RVFHPNVYNDGQICLDILQNQWSPIYDISAILTSIQSLLSDPNPASPANSEASRLYSEHRREYDRRVRE 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57439.16153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G154_ECTSI3.580e-4298.55UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KW20_9PHAE9.780e-4298.55UBC core domain-containing protein n=5 Tax=Ochroph... [more]
A0A1Z5KB46_FISSO1.370e-3892.75Ubiquitin-conjugating enzyme E2 A n=1 Tax=Fistulif... [more]
B8CAB3_THAPS3.170e-3892.75Ubiquitin-conjugating enzyme 1 n=19 Tax=Bacillario... [more]
A0A4D9CYF5_9STRA1.530e-3789.86UBC core domain-containing protein n=2 Tax=Monodop... [more]
K3WSJ4_GLOUD5.220e-3789.86UBC core domain-containing protein n=37 Tax=Oomyco... [more]
F0WM57_9STRA8.820e-3789.86Ubiquitinconjugating enzyme E2 putative n=1 Tax=Al... [more]
A0A7S3K6N8_9STRA8.280e-3692.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YDU2_AURAN1.360e-3589.86UBC core domain-containing protein n=1 Tax=Aureoco... [more]
A0A8J2SZI0_9STRA6.180e-3588.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57439contigEcto-sp13_S_contig57439:93..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score143.3
Seed ortholog evalue4.3e-32
Seed eggNOG ortholog2880.D7G154
Model size207
KEGG koko:K10573
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031371,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0033503,GO:0033554,GO:0034641,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0419@2759
EC2.3.2.23
Cds size207
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463795.7620513-CDS-Ecto-sp13_S_contig57439:92..2451681463795.7620513-CDS-Ecto-sp13_S_contig57439:92..245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57439 93..245 +
1681463795.7748873-CDS-Ecto-sp13_S_contig57439:826..8801681463795.7748873-CDS-Ecto-sp13_S_contig57439:826..880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57439 827..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57439.16153.1prot_Ecto-sp13_S_contig57439.16153.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57439 93..880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57439.16153.1

>prot_Ecto-sp13_S_contig57439.16153.1 ID=prot_Ecto-sp13_S_contig57439.16153.1|Name=mRNA_Ecto-sp13_S_contig57439.16153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
RRFHPNIYNNGQICLDILQNQWSPIYDICAILTSIQSLLCDPNPASPANS
EASRLYQENRREYNRRVRE
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mRNA from alignment at Ecto-sp13_S_contig57439:93..880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57439.16153.1 ID=mRNA_Ecto-sp13_S_contig57439.16153.1|Name=mRNA_Ecto-sp13_S_contig57439.16153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57439:93..880+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTTCCACCCGAACATCTACAACAACGGTCAAATCTGTCTCGACAT
CTTGCAAAACCAATGGAGTCCGATCTACGACATCTGCGCCATCCTCACAT
CCATCCAGTCGCTCCTGTGCGATCCTAACCCGGCGTCTCCGGCAAATTCG
GAGGTGAGACCCGCAGTTGTGTACCGATGGTACAGAGCATGAAATCAAGA
AGTAGAATCACTGATTCCAGGAACATGAGGTTAACCTTCAGCTTTCCTAG
CGACGCACGCACAGCAGGAAAGTTTTCTCGGAGCTGGCTTGTGCGATTAT
GTTGATCGTTTCAAGCTCACAGCTTCTCCTTCTAGTTGATCTGATTCATG
ACAACCTTTTCATAATCCTTCCGGCTTGCTCTGGCAACTGGTTGGGCGGT
GAGTGTGTGTTACAGGTATGACAGCGCTACCCGGATGATCAAATGAAATG
TCGTCAGTATTTTTTTGCTTTATTTCCACACGTTGCGTTCTCGTTTTGCA
TGTTTTGTTCACATGTCGAACTACCTGGCGTCTTTTCTCAGCCTGGACGC
ACGTACAAAGTCACCCCAATTTGTTTTTTCGGTTTGTTTTCGTCCGTAAT
ATCTCGAGCAGTCGTCCCGGCTAGATGGATTGTATCCCCCAACCTCTGTT
CGTTTTTTTGACTTGTTTTTGCCCGTAATACCCTGACCCCTGTTTGTTTG
CTTGTCTTATTTTTGCCCGTAAAATCTCGGGCAGGCGTCCCGGCTGTACC
AGGAGAACAGGCGAGAATATAACCGCCGCGTCAGGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57439:93..880+

>mRNA_Ecto-sp13_S_contig57439.16153.1 ID=mRNA_Ecto-sp13_S_contig57439.16153.1|Name=mRNA_Ecto-sp13_S_contig57439.16153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57439:93..880+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTTCCACCCGAACATCTACAACAACGGTCAAATCTGTCTCGACAT
CTTGCAAAACCAATGGAGTCCGATCTACGACATCTGCGCCATCCTCACAT
CCATCCAGTCGCTCCTGTGCGATCCTAACCCGGCGTCTCCGGCAAATTCG
GAGGCGTCCCGGCTGTACCAGGAGAACAGGCGAGAATATAACCGCCGCGT
CAGGGAA
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