mRNA_Ecto-sp13_S_contig57427.16151.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57427.16151.1
Unique NamemRNA_Ecto-sp13_S_contig57427.16151.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57427.16151.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 7.210e-19
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:  217 KKVSSGEGEPADGLELPSDLLLRVKSGGLQRLEADELEAEEQXXXXXXXXXXX--RRKARAKAGDASR 414
            KK SSGEGEPADGLELPSDLLLRVKSGGLQR+EAD LEAEEQ XXXXXXXXXX  RRKARAKAGDASR
Sbjct:   88 KKPSSGEGEPADGLELPSDLLLRVKSGGLQRMEADVLEAEEQAXXXXXXXXXXXGRRKARAKAGDASR 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57427.16151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIC2_ECTSI7.210e-1991.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57427contigEcto-sp13_S_contig57427:61..480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001350.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463795.5688803-CDS-Ecto-sp13_S_contig57427:60..4801681463795.5688803-CDS-Ecto-sp13_S_contig57427:60..480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57427 61..480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57427.16151.1prot_Ecto-sp13_S_contig57427.16151.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57427 61..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57427.16151.1

>prot_Ecto-sp13_S_contig57427.16151.1 ID=prot_Ecto-sp13_S_contig57427.16151.1|Name=mRNA_Ecto-sp13_S_contig57427.16151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
PTCCPRQTADATDEEQSSDDEAPEEVSAAAATALAGRRRKAEHQARQAAA
APKRKRARTSSSSKAGDDGGGNKKVSSGEGEPADGLELPSDLLLRVKSGG
LQRLEADELEAEEQAAAAAAAAPGGRRKARAKAGDASRR*
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mRNA from alignment at Ecto-sp13_S_contig57427:61..480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57427.16151.1 ID=mRNA_Ecto-sp13_S_contig57427.16151.1|Name=mRNA_Ecto-sp13_S_contig57427.16151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57427:61..480- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCACTTGCTGCCCGCGCCAAACAGCAGACGCCACGGATGAGGAGCAAAG
CAGCGACGACGAGGCGCCGGAGGAGGTCAGCGCCGCGGCGGCAACCGCCC
TTGCCGGTCGCCGCCGAAAGGCGGAGCACCAGGCGCGCCAGGCGGCCGCC
GCTCCCAAGAGGAAGCGAGCCCGGACATCCTCGTCTTCGAAAGCTGGTGA
TGACGGCGGCGGCAACAAGAAGGTCTCGTCCGGGGAAGGCGAGCCGGCAG
ACGGGCTCGAGCTCCCCTCGGACTTGCTGCTGAGGGTTAAGTCCGGTGGG
TTGCAGCGCTTGGAAGCGGACGAGTTGGAGGCGGAGGAGCAGGCGGCGGC
AGCGGCGGCGGCCGCGCCGGGCGGAAGGCGGAAGGCGAGAGCCAAGGCTG
GGGATGCCTCGCGGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57427:61..480-

>mRNA_Ecto-sp13_S_contig57427.16151.1 ID=mRNA_Ecto-sp13_S_contig57427.16151.1|Name=mRNA_Ecto-sp13_S_contig57427.16151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57427:61..480- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCACTTGCTGCCCGCGCCAAACAGCAGACGCCACGGATGAGGAGCAAAG
CAGCGACGACGAGGCGCCGGAGGAGGTCAGCGCCGCGGCGGCAACCGCCC
TTGCCGGTCGCCGCCGAAAGGCGGAGCACCAGGCGCGCCAGGCGGCCGCC
GCTCCCAAGAGGAAGCGAGCCCGGACATCCTCGTCTTCGAAAGCTGGTGA
TGACGGCGGCGGCAACAAGAAGGTCTCGTCCGGGGAAGGCGAGCCGGCAG
ACGGGCTCGAGCTCCCCTCGGACTTGCTGCTGAGGGTTAAGTCCGGTGGG
TTGCAGCGCTTGGAAGCGGACGAGTTGGAGGCGGAGGAGCAGGCGGCGGC
AGCGGCGGCGGCCGCGCCGGGCGGAAGGCGGAAGGCGAGAGCCAAGGCTG
GGGATGCCTCGCGGAGGTGA
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