mRNA_Ecto-sp13_S_contig5735.16140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5735.16140.1
Unique NamemRNA_Ecto-sp13_S_contig5735.16140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5735.16140.1 vs. uniprot
Match: A0A6H5JM66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM66_9PHAE)

HSP 1 Score: 763 bits (1971), Expect = 8.680e-276
Identity = 383/395 (96.96%), Postives = 385/395 (97.47%), Query Frame = 1 
Query:    1 MDSSCTSCNQTNNLGIFEGIRLTLVCTSCASTALSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEAKAAQVEQKRQVRLERLTRVHGISPAAPLHRALFSHIFGDYLWAAHPKQKLKQVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYDQLRRDFEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGY----ISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGDPRFWSEYHHACESAYRKALLENGNTMDQSIKMALRG 1173
            MDSSCTSCNQTN+LGIFEGIRLTLVC SCASTALSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEAKAAQV QKRQVRLERLTRVHGISPAAPLH ALFSHIFGDYLWAAHPKQKLKQVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYDQLRR FEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQG     ISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTG PRFWSEYHHACESAYR+ALLENGNTMDQSIKMALRG
Sbjct:    1 MDSSCTSCNQTNSLGIFEGIRLTLVCKSCASTALSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEAKAAQVAQKRQVRLERLTRVHGISPAAPLHHALFSHIFGDYLWAAHPKQKLKQVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYDQLRRAFEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQGSCNISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYREALLENGNTMDQSIKMALRG 395
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5735.16140.1 vs. uniprot
Match: Q8QN81_ESV1K (EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K)

HSP 1 Score: 744 bits (1920), Expect = 2.400e-270
Identity = 371/397 (93.45%), Postives = 381/397 (95.97%), Query Frame = 1 
Query:   16 TSCNQTNNLGIFEGIRLTLVCTSCASTALSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEAKAAQVEQKRQVRLERLTRVHGISPAAPLHRALFSHIFGDYLWAAHPKQKLKQVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYDQLRRDFEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGY--ISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGDPRFWSEYHHACESAYRKALLENGNTMDQSIKMALRGCASGRRRWN 1200
            +SC  + NLGIFEGIRLTLVCTSCASTA SDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQ AVD+ECEAKA +VE+KRQVRLERLTRVHGISPAAPLHRALFSHIFGDYLWA HPKQKLKQVKYRFSAHDISVRLC  DPVAAMNYCENRGITAFVYDQLRRDFEYSLFVSTRAFRLEGVAISR+ CPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQG    S+TEVERMMK+PAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRR+LQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTG PRFWSEYHHACESAYR+ALLENGNTMDQSIKMALRGCAS RRRWN
Sbjct:    3 SSCCTSENLGIFEGIRLTLVCTSCASTARSDEGDPIVCFSKARDLFPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQAAVDEECEAKALEVEKKRQVRLERLTRVHGISPAAPLHRALFSHIFGDYLWATHPKQKLKQVKYRFSAHDISVRLCPHDPVAAMNYCENRGITAFVYDQLRRDFEYSLFVSTRAFRLEGVAISRFFCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQGSCSTTEVERMMKHPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRVLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYRQALLENGNTMDQSIKMALRGCASRRRRWN 399
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5735.16140.1 vs. uniprot
Match: A0A6H5JEH1_9PHAE (HTH_OrfB_IS605 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH1_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.320e-39
Identity = 86/177 (48.59%), Postives = 102/177 (57.63%), Query Frame = 1 
Query:  352 VHGISPAAPLHRALFSHIFGDYLWAAHPKQKLKQVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYDQLRRDFEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGY-ISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEF 879
            VH ISPA+ +H  LF HIFGDYLWA  PK+ LKQ+KYRF AHDIS+ LC+ DPV AM+  ENR I                                           +GPLS IP +V RLK+NAPRMLRM+LQ    +  E  RMM Y  M+TR+RRC +YAHDPETVA  M+EF
Sbjct:   19 VHKISPASQIHYVLFEHIFGDYLWATSPKKTLKQLKYRFFAHDISLDLCAADPVCAMHCLENRSID------------------------------------------DGPLSDIPENVNRLKQNAPRMLRMSLQSLGFAKAENYRMMNYSPMKTRLRRCFKYAHDPETVAKNMSEF 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5735.16140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JM66_9PHAE8.680e-27696.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN81_ESV1K2.400e-27093.45EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K[more]
A0A6H5JEH1_9PHAE3.320e-3948.59HTH_OrfB_IS605 domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5735contigEcto-sp13_S_contig5735:2475..3677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1203
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-209
Ec32 orthologEc-06_004920.1
Cds size1203
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463794.3903499-CDS-Ecto-sp13_S_contig5735:2474..36771681463794.3903499-CDS-Ecto-sp13_S_contig5735:2474..3677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5735 2475..3677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5735.16140.1prot_Ecto-sp13_S_contig5735.16140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5735 2475..3677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5735.16140.1

>prot_Ecto-sp13_S_contig5735.16140.1 ID=prot_Ecto-sp13_S_contig5735.16140.1|Name=mRNA_Ecto-sp13_S_contig5735.16140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MDSSCTSCNQTNNLGIFEGIRLTLVCTSCASTALSDEGDPIVCFSKARDL
FPTIPPKRVKQLMSTPRRNPHYRNAAPMRMYSVAELRVLQGAVDQECEAK
AAQVEQKRQVRLERLTRVHGISPAAPLHRALFSHIFGDYLWAAHPKQKLK
QVKYRFSAHDISVRLCSPDPVAAMNYCENRGITAFVYDQLRRDFEYSLFV
STRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMA
LQGYISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDR
THRRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITREL
FDTGDPRFWSEYHHACESAYRKALLENGNTMDQSIKMALRGCASGRRRWN
*
back to top

mRNA from alignment at Ecto-sp13_S_contig5735:2475..3677-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5735.16140.1 ID=mRNA_Ecto-sp13_S_contig5735.16140.1|Name=mRNA_Ecto-sp13_S_contig5735.16140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5735:2475..3677- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCTTCGTGCACTTCATGTAATCAGACCAACAACCTCGGGATATT
CGAGGGGATTCGACTCACACTCGTGTGCACGTCATGCGCGTCAACCGCAC
TCAGTGACGAGGGTGACCCCATCGTTTGCTTCTCCAAGGCCAGGGACCTT
TTCCCTACGATACCGCCGAAGCGCGTGAAACAATTGATGTCTACGCCGCG
ACGCAACCCCCACTACCGTAACGCCGCGCCCATGCGCATGTATTCGGTGG
CGGAGCTGAGGGTGTTGCAAGGCGCGGTGGACCAAGAGTGTGAGGCCAAG
GCCGCTCAGGTTGAACAGAAGCGACAGGTCCGGCTCGAGCGGTTGACGAG
GGTGCACGGCATCAGCCCCGCTGCTCCGCTGCACCGCGCTCTATTTTCTC
ACATTTTCGGGGATTATCTGTGGGCGGCACACCCGAAGCAAAAACTGAAG
CAGGTCAAGTACAGGTTTTCGGCACACGACATTTCAGTGCGGCTGTGCTC
GCCGGACCCCGTTGCGGCCATGAATTATTGCGAGAACCGCGGCATCACCG
CGTTCGTGTACGACCAGCTGCGGCGGGATTTCGAGTACTCGCTGTTTGTC
TCTACACGCGCGTTCCGGTTGGAGGGGGTGGCTATCTCGCGCTACCTCTG
CCCATCGGAGCTGGCTGAACTAAAAAACGGACCTCTGTCCCAAATTCCGG
CGAGCGTCGAGCGACTGAAAAAAAACGCACCAAGAATGCTACGCATGGCG
CTGCAGGGTTACATTAGTAGTACCGAGGTCGAGCGAATGATGAAGTATCC
CGCGATGAGAACGAGGGTGCGGCGATGCATCGAGTACGCCCACGACCCCG
AGACGGTAGCGGCCAAGATGGCGGAGTTTTGGCGCACGAAAGACGACCGC
ACGCACCGGCGCCGTATGCTGCAGGACGCCATGGATTTGAGAGGGCTAGA
CATTCGGCCCGATAGCGTGTACTGCCATGACTACATCTGTGGTCTGATAG
ACGTCGACCTCGAGGAGCTCGTGGGAATACAGTACATCACCCGCGAGCTG
TTTGATACCGGTGACCCGCGTTTCTGGAGCGAGTATCACCACGCGTGCGA
GTCCGCGTACAGAAAGGCGTTGCTCGAGAACGGCAACACCATGGACCAGT
CAATTAAAATGGCGCTACGAGGGTGCGCCTCGGGGCGCAGGCGGTGGAAC
TGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5735:2475..3677-

>mRNA_Ecto-sp13_S_contig5735.16140.1 ID=mRNA_Ecto-sp13_S_contig5735.16140.1|Name=mRNA_Ecto-sp13_S_contig5735.16140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5735:2475..3677- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCTTCGTGCACTTCATGTAATCAGACCAACAACCTCGGGATATT
CGAGGGGATTCGACTCACACTCGTGTGCACGTCATGCGCGTCAACCGCAC
TCAGTGACGAGGGTGACCCCATCGTTTGCTTCTCCAAGGCCAGGGACCTT
TTCCCTACGATACCGCCGAAGCGCGTGAAACAATTGATGTCTACGCCGCG
ACGCAACCCCCACTACCGTAACGCCGCGCCCATGCGCATGTATTCGGTGG
CGGAGCTGAGGGTGTTGCAAGGCGCGGTGGACCAAGAGTGTGAGGCCAAG
GCCGCTCAGGTTGAACAGAAGCGACAGGTCCGGCTCGAGCGGTTGACGAG
GGTGCACGGCATCAGCCCCGCTGCTCCGCTGCACCGCGCTCTATTTTCTC
ACATTTTCGGGGATTATCTGTGGGCGGCACACCCGAAGCAAAAACTGAAG
CAGGTCAAGTACAGGTTTTCGGCACACGACATTTCAGTGCGGCTGTGCTC
GCCGGACCCCGTTGCGGCCATGAATTATTGCGAGAACCGCGGCATCACCG
CGTTCGTGTACGACCAGCTGCGGCGGGATTTCGAGTACTCGCTGTTTGTC
TCTACACGCGCGTTCCGGTTGGAGGGGGTGGCTATCTCGCGCTACCTCTG
CCCATCGGAGCTGGCTGAACTAAAAAACGGACCTCTGTCCCAAATTCCGG
CGAGCGTCGAGCGACTGAAAAAAAACGCACCAAGAATGCTACGCATGGCG
CTGCAGGGTTACATTAGTAGTACCGAGGTCGAGCGAATGATGAAGTATCC
CGCGATGAGAACGAGGGTGCGGCGATGCATCGAGTACGCCCACGACCCCG
AGACGGTAGCGGCCAAGATGGCGGAGTTTTGGCGCACGAAAGACGACCGC
ACGCACCGGCGCCGTATGCTGCAGGACGCCATGGATTTGAGAGGGCTAGA
CATTCGGCCCGATAGCGTGTACTGCCATGACTACATCTGTGGTCTGATAG
ACGTCGACCTCGAGGAGCTCGTGGGAATACAGTACATCACCCGCGAGCTG
TTTGATACCGGTGACCCGCGTTTCTGGAGCGAGTATCACCACGCGTGCGA
GTCCGCGTACAGAAAGGCGTTGCTCGAGAACGGCAACACCATGGACCAGT
CAATTAAAATGGCGCTACGAGGGTGCGCCTCGGGGCGCAGGCGGTGGAAC
TGA
back to top