mRNA_Ecto-sp13_S_contig57194.16119.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57194.16119.1
Unique NamemRNA_Ecto-sp13_S_contig57194.16119.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.960e-32
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 MKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSA 192
            MKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSA
Sbjct:  174 MKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSA 237
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: A0A7S3HBP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBP6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.550e-18
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSA 183
            KFVT+AYKKKL+E KKWE + +L DE EQR DV K+GM GFY+NL+TKN+AMGGDV+  A
Sbjct:  150 KFVTAAYKKKLLEDKKWEYEDRLADEVEQRTDVRKSGMEGFYANLLTKNVAMGGDVDAHA 209
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: A0A7S1XVS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVS8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.050e-16
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANS 189
            KFV +AY+K+L E++ WE  ++ E ERE RNDVTKTGM GFYSNL+TKNIAMGGDV+ + +S
Sbjct:   85 KFVGAAYRKQLEEREAWEKAEREEAEREARNDVTKTGMMGFYSNLLTKNIAMGGDVKNAQSS 146
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: A0A835YZI8_9STRA (Coiled-coil domain-containing protein 55-domain containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.140e-13
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 MKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKT---GMGGFYSNLITKNIAMGGDV 171
            MKFVTSAYK KLMEQKKWE+ Q+ E ERE + +       GM  FYSNL+TKNIAMGGDV
Sbjct:  165 MKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMGGDV 224
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: A0A7S4E5L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5L4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.260e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSA 183
            +FVT+AYKK+L E +KW+ + +  DE E+R     +GM GFYSNL+T+NIA G DVEK+A
Sbjct:  156 RFVTAAYKKQLQESRKWDAEDRRMDEVEERTSAQTSGMAGFYSNLLTRNIAAGADVEKAA 215
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: W4GKX4_9STRA (DUF2040 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKX4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.860e-11
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKT--GMGGFYSNLITKNIAMGGDVEK 177
            KFVT++YK+KLME K+WE +       E  NDVTK   GM GFY+NL+T NIAMGGDV K
Sbjct:  148 KFVTASYKRKLMESKRWEQEDARLAAIEAANDVTKREHGMAGFYANLLTNNIAMGGDVSK 207
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: A0A485KZJ8_9STRA (Aste57867_13778 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZJ8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.890e-11
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKT--GMGGFYSNLITKNIAMGGDVEK 177
            KFVT++YK+KLME K+WE +       E  NDVTK   GM GFY+NL+T NIAMGGDV K
Sbjct:  148 KFVTASYKRKLMESKRWEQEDARLAAIEAANDVTKKEHGMAGFYANLLTSNIAMGGDVSK 207
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: A0A067CTN4_SAPPC (DUF2040 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTN4_SAPPC)

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-11
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MGGFYSNLITKNIAMGGDVEK 177
            KF+TS+YK+KLME K+WE +       E   DVTK G   M GFY+NL+T NIAMGGDVEK
Sbjct:  143 KFITSSYKRKLMEAKRWEEEDARLAAIEDAQDVTKRGELGMAGFYANLLTNNIAMGGDVEK 203
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: T0QM91_SAPDV (DUF2040 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QM91_SAPDV)

HSP 1 Score: 66.2 bits (160), Expect = 2.510e-11
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTG---MGGFYSNLITKNIAMGGDVEK 177
            KF+TS+YK+KLME K+WE +       E   DVTK G   M GFY+NL+T NIAMGGDVEK
Sbjct:  143 KFITSSYKRKLMEAKRWEEEDARLAAIEDAQDVTKRGELGMAGFYANLLTNNIAMGGDVEK 203
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BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Match: A0A024UUN6_9STRA (DUF2040 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUN6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.660e-11
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 KFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKT--GMGGFYSNLITKNIAMGGDVEK 177
            KF+T++YK+KLME K+WE +       E  NDVTK   GM GFY+NL+T NIAMGGDV K
Sbjct:  146 KFITASYKRKLMESKRWEQEDARLAAIEAANDVTKREHGMAGFYANLLTNNIAMGGDVSK 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57194.16119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R5_ECTSI2.960e-32100.00DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S3HBP6_9STRA8.550e-1868.33Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1XVS8_9STRA8.050e-1664.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YZI8_9STRA1.140e-1366.67Coiled-coil domain-containing protein 55-domain co... [more]
A0A7S4E5L4_9STRA2.260e-1255.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W4GKX4_9STRA1.860e-1160.00DUF2040 domain-containing protein n=5 Tax=Aphanomy... [more]
A0A485KZJ8_9STRA1.890e-1160.00Aste57867_13778 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CTN4_SAPPC2.400e-1159.02DUF2040 domain-containing protein n=1 Tax=Saproleg... [more]
T0QM91_SAPDV2.510e-1159.02DUF2040 domain-containing protein n=1 Tax=Saproleg... [more]
A0A024UUN6_9STRA2.660e-1158.33DUF2040 domain-containing protein n=1 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57194contigEcto-sp13_S_contig57194:119..779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score124.8
Seed ortholog evalue1.5e-26
Seed eggNOG ortholog2880.D7G2R5
Preferred nameNSRP1
Model size192
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons2
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2117@1,KOG2117@2759
EC3.4.17.22,3.6.4.12
Cds size192
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.670774-CDS-Ecto-sp13_S_contig57194:118..2401681463792.670774-CDS-Ecto-sp13_S_contig57194:118..240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57194 119..240 +
1681463792.6868804-CDS-Ecto-sp13_S_contig57194:709..7791681463792.6868804-CDS-Ecto-sp13_S_contig57194:709..779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57194 710..779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57194.16119.1prot_Ecto-sp13_S_contig57194.16119.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57194 119..779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57194.16119.1

>prot_Ecto-sp13_S_contig57194.16119.1 ID=prot_Ecto-sp13_S_contig57194.16119.1|Name=mRNA_Ecto-sp13_S_contig57194.16119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKN
IAMGGDVEKSANSA
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mRNA from alignment at Ecto-sp13_S_contig57194:119..779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57194.16119.1 ID=mRNA_Ecto-sp13_S_contig57194.16119.1|Name=mRNA_Ecto-sp13_S_contig57194.16119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57194:119..779+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAATTCGTCACGTCCGCGTACAAGAAGAAGCTCATGGAGCAGAAGAA
GTGGGAGCTCCAGCAGCAGCTAGAGGACGAGAGGGAGCAGCGGAATGACG
TCACCAAGACGGGCATGGGCGGGTGCGTCAGTTGTTTGTTTTTTCTTAGC
AGCGGTAGTATAAATAGTAAAGCACGGTCTCCTCCTCTCGTTACATCTGG
GGCCGATAGAAAGACAGGATGACTCTACTGCTGTAATTTGTTGTCTGCTC
ATTTTCAAACGGTAATGTTGGAATTGTTGGACGGATCGGGCGCGACTTGG
TTTGGACGCCTGGAATGATGACGGTGGGTCGTACGAGAGCTCGGCTGAAG
GTCGCGTGGGGTGCCTTGTCCACAACCGGTCGCGAAGGCACACTCCTGGT
GTGTTCATGTGATCAACGAACCCCGTCACCCATACCCTTGTCACCGGTAT
GAAACACAAGCACTCTTTCGTGCGGTCATGCACGAGGTTTTGCTTGCACA
CGGTCATCCAAAACACGCTCGAAGGATCCCCCCCCGCTCCCTGATCTCGC
ATTATGCTCGTCTTTTTGTTCCGTGGCGTACCATGGTACAGGTTTTACTC
GAACCTTATCACCAAGAACATCGCCATGGGCGGCGACGTCGAGAAGTCCG
CCAATAGCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57194:119..779+

>mRNA_Ecto-sp13_S_contig57194.16119.1 ID=mRNA_Ecto-sp13_S_contig57194.16119.1|Name=mRNA_Ecto-sp13_S_contig57194.16119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57194:119..779+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAATTCGTCACGTCCGCGTACAAGAAGAAGCTCATGGAGCAGAAGAA
GTGGGAGCTCCAGCAGCAGCTAGAGGACGAGAGGGAGCAGCGGAATGACG
TCACCAAGACGGGCATGGGCGGGTTTTACTCGAACCTTATCACCAAGAAC
ATCGCCATGGGCGGCGACGTCGAGAAGTCCGCCAATAGCGCC
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