mRNA_Ecto-sp13_S_contig57172.16116.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57172.16116.1
Unique NamemRNA_Ecto-sp13_S_contig57172.16116.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: D8LB32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB32_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.500e-20
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   10 QAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            +AFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK
Sbjct:   98 RAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 140
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: A0A6S8RCU5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RCU5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.370e-11
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 QAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            Q FRA DE+G GY+E  K+ E L++KGTPFR KEIEAF+ VAK
Sbjct:   98 QCFRAFDEEGRGYVEATKLREALITKGTPFREKEIEAFMEVAK 140
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: A0A7S3YMG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMG9_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 4.080e-11
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 VAQAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            + QAFR +D  G GYI+ ++M ELLV+KGTPFR KE++AF++VAK
Sbjct:   86 ILQAFRTLDPDGLGYIDASRMKELLVTKGTPFREKELDAFMTVAK 130
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: F0YEV1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV1_AURAN)

HSP 1 Score: 62.0 bits (149), Expect = 9.590e-11
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 QAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            QAFR  DE G GYIE  ++ E L++KGTPFR KEI+AFLSVAK
Sbjct:   99 QAFRVFDEDGKGYIEANRLREALITKGTPFREKEIDAFLSVAK 141
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: A0A7S2UZH6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZH6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.240e-9
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    4 VAQAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            + QAFR +D +  GYI+ A+M ELLV+KGT FR KEI+AF+SVAK
Sbjct:  105 ILQAFRTLDPEKNGYIDAARMRELLVTKGTAFRDKEIDAFMSVAK 149
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: K3XBG4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBG4_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 3.550e-9
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   13 AFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            AFR ID +  GYIE   M ELL++KGTPFR KE+EAFLSVAK
Sbjct:  109 AFRVIDAEKKGYIEADIMRELLITKGTPFREKEMEAFLSVAK 150
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: A0A6U4FZN3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FZN3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.720e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   13 AFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            AFR ID  G G++   ++ ELLV +GTPFRAKEIEAF++VAK
Sbjct:   46 AFRVIDADGKGFVSADELRELLVQEGTPFRAKEIEAFMNVAK 87
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: A0A5D6YIQ5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIQ5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.060e-9
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 AFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            AFR ID +  GYIE   M ELL++KGTPFR KE+EAFL VAK
Sbjct:  110 AFRTIDAEKRGYIEADTMRELLITKGTPFREKELEAFLGVAK 151
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: A0A8K1C2D7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2D7_PYTOL)

HSP 1 Score: 57.0 bits (136), Expect = 8.840e-9
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 AFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            AFR +D    GYIE   M ELL++KGTPFR KE+EAFLSVAK
Sbjct:  101 AFRVLDADKKGYIEADVMRELLITKGTPFREKEMEAFLSVAK 142
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BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Match: A0A7S1XRS0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRS0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.280e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   13 AFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK 138
            AFR ID  G G++   ++ ELLV +GTPFRAKEIEAF++VAK
Sbjct:  111 AFRVIDADGKGFVSADELRELLVQEGTPFRAKEIEAFMNVAK 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57172.16116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LB32_ECTSI4.500e-2097.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S8RCU5_9STRA3.370e-1165.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3YMG9_HETAK4.080e-1160.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YEV1_AURAN9.590e-1167.44Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2UZH6_9STRA1.240e-962.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3XBG4_GLOUD3.550e-969.05Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6U4FZN3_9STRA3.720e-961.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A5D6YIQ5_9STRA5.060e-966.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1C2D7_PYTOL8.840e-966.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1XRS0_9STRA1.280e-861.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57172contigEcto-sp13_S_contig57172:75..212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.9
Seed ortholog evalue5.4e-15
Seed eggNOG ortholog2880.D8LB32
Preferred nameEFCAB2
Model size138
KEGG koko:K14401
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0097014,GO:0099568,GO:0120025,GO:0120038
Exons1
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-27_005420.1
Cds size138
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.527921-CDS-Ecto-sp13_S_contig57172:74..2121681463792.527921-CDS-Ecto-sp13_S_contig57172:74..212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57172 75..212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57172.16116.1prot_Ecto-sp13_S_contig57172.16116.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57172 75..212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57172.16116.1

>prot_Ecto-sp13_S_contig57172.16116.1 ID=prot_Ecto-sp13_S_contig57172.16116.1|Name=mRNA_Ecto-sp13_S_contig57172.16116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
FVAQAFRAIDEKGCGYIETAKMNELLVSKGTPFRAKEIEAFLSVAK
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mRNA from alignment at Ecto-sp13_S_contig57172:75..212-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57172.16116.1 ID=mRNA_Ecto-sp13_S_contig57172.16116.1|Name=mRNA_Ecto-sp13_S_contig57172.16116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57172:75..212- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTTGCTCAGGCGTTTCGTGCCATCGACGAAAAAGGCTGCGGATACAT
CGAAACCGCGAAGATGAACGAGCTCCTCGTTAGCAAAGGGACGCCATTCC
GAGCAAAGGAGATCGAGGCCTTCTTAAGCGTTGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57172:75..212-

>mRNA_Ecto-sp13_S_contig57172.16116.1 ID=mRNA_Ecto-sp13_S_contig57172.16116.1|Name=mRNA_Ecto-sp13_S_contig57172.16116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57172:75..212- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTTGCTCAGGCGTTTCGTGCCATCGACGAAAAAGGCTGCGGATACAT
CGAAACCGCGAAGATGAACGAGCTCCTCGTTAGCAAAGGGACGCCATTCC
GAGCAAAGGAGATCGAGGCCTTCTTAAGCGTTGCCAAG
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