mRNA_Ecto-sp13_S_contig57170.16115.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57170.16115.1
Unique NamemRNA_Ecto-sp13_S_contig57170.16115.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1
Query:   34 KPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            K QVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQ+
Sbjct: 1778 KIQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQM 1825          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: UPI000B8F5B21 (activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=UPI000B8F5B21)

HSP 1 Score: 85.9 bits (211), Expect = 2.100e-20
Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 1
Query:   34 KPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            K QVL+ TSTLAWGVNFPAHLVVVKGTE++DGKS+RYVD+PITD+LQ+
Sbjct:   22 KIQVLIATSTLAWGVNFPAHLVVVKGTEYYDGKSRRYVDYPITDVLQM 69          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: A0A1Y1IBL7_KLENI (DEAD/DEAH box helicase domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBL7_KLENI)

HSP 1 Score: 91.3 bits (225), Expect = 4.670e-20
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:   28 HRKPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            + K Q+LVCTSTLAWGVNFPAHLVVVKGTE++DGKS+RYVDFPITD+LQ+
Sbjct: 1663 NNKIQILVCTSTLAWGVNFPAHLVVVKGTEYYDGKSKRYVDFPITDVLQM 1712          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: A0A7S3UTV5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTV5_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 8.630e-20
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1
Query:   34 KPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            K QVLVCTSTLAWGVNFPAHLVVVKGTEFFDGK  RYVDFPITD+LQ+
Sbjct:  481 KLQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKQGRYVDFPITDVLQM 528          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: A0A8J2A7V8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2A7V8_9DINO)

HSP 1 Score: 83.6 bits (205), Expect = 1.180e-19
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   34 KPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            K  +L+ TSTLAWGVNFPAHLVVVKGTEFFDG ++RYVDFPITD+LQ+
Sbjct:   11 KIMILIATSTLAWGVNFPAHLVVVKGTEFFDGATKRYVDFPITDVLQM 58          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: A0A2G9GIP9_9LAMI (DNA helicase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GIP9_9LAMI)

HSP 1 Score: 90.1 bits (222), Expect = 1.180e-19
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   28 HRKPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            + K QVLVCTSTLAWGVN PAHLV++KGTE+FDGKS+RYVDFPITD+LQ+
Sbjct:  165 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYFDGKSKRYVDFPITDILQM 214          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: W7TU71_9STRA (Activating signal cointegrator 1 complex subunit 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU71_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.190e-19
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1
Query:   34 KPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            K QVLVCTSTLAWGVNFPAHLVV+KGTE+FDGK+ RYVDFP+TD+LQ+
Sbjct: 1695 KIQVLVCTSTLAWGVNFPAHLVVIKGTEYFDGKTSRYVDFPVTDILQM 1742          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: A0A4W5KUY3_9TELE (Uncharacterized protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5KUY3_9TELE)

HSP 1 Score: 83.6 bits (205), Expect = 1.540e-19
Identity = 35/46 (76.09%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   40 QVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            Q+L+ TSTLAWGVNFPAHLV+VKGTE++DGK++RYVD+PITD+LQ+
Sbjct:   25 QILIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQM 70          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: A0A833QWK0_9POAL (Activating signal cointegrator 1 complex subunit 3 isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QWK0_9POAL)

HSP 1 Score: 89.7 bits (221), Expect = 1.630e-19
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   28 HRKPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            + K Q+LVCTSTLAWGVN PAHLV++KGTEFFDGK++RYVDFPITD+LQ+
Sbjct: 1551 NNKIQILVCTSTLAWGVNLPAHLVIIKGTEFFDGKTKRYVDFPITDILQM 1600          
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Match: A0A438HM85_VITVI (DExH-box ATP-dependent RNA helicase DExH14 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HM85_VITVI)

HSP 1 Score: 89.0 bits (219), Expect = 1.640e-19
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   28 HRKPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVDFPITDLLQV 177
            + K QVLVCTSTLAWGVN PAHLV++KGTEF+DGK++RYVDFPITD+LQ+
Sbjct:  100 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEFYDGKAKRYVDFPITDILQM 149          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57170.16115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI1.110e-2195.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000B8F5B212.100e-2081.25activating signal cointegrator 1 complex subunit 3... [more]
A0A1Y1IBL7_KLENI4.670e-2082.00DEAD/DEAH box helicase domain containing protein n... [more]
A0A7S3UTV5_HETAK8.630e-2089.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2A7V8_9DINO1.180e-1979.17Hypothetical protein (Fragment) n=1 Tax=Amoebophry... [more]
A0A2G9GIP9_9LAMI1.180e-1980.00DNA helicase n=1 Tax=Handroanthus impetiginosus Ta... [more]
W7TU71_9STRA1.190e-1983.33Activating signal cointegrator 1 complex subunit 3... [more]
A0A4W5KUY3_9TELE1.540e-1976.09Uncharacterized protein n=1 Tax=Hucho hucho TaxID=... [more]
A0A833QWK0_9POAL1.630e-1978.00Activating signal cointegrator 1 complex subunit 3... [more]
A0A438HM85_VITVI1.640e-1978.00DExH-box ATP-dependent RNA helicase DExH14 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57170contigEcto-sp13_S_contig57170:708..884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score98.6
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FN81
Model size177
KEGG koko:K12854,ko:K18663
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12,3.6.4.13
Cds size177
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.4961812-CDS-Ecto-sp13_S_contig57170:707..8841681463792.4961812-CDS-Ecto-sp13_S_contig57170:707..884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57170 708..884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57170.16115.1prot_Ecto-sp13_S_contig57170.16115.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57170 708..884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57170.16115.1

>prot_Ecto-sp13_S_contig57170.16115.1 ID=prot_Ecto-sp13_S_contig57170.16115.1|Name=mRNA_Ecto-sp13_S_contig57170.16115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MITTTTTPPHRKPQVLVCTSTLAWGVNFPAHLVVVKGTEFFDGKSQRYVD
FPITDLLQV
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mRNA from alignment at Ecto-sp13_S_contig57170:708..884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57170.16115.1 ID=mRNA_Ecto-sp13_S_contig57170.16115.1|Name=mRNA_Ecto-sp13_S_contig57170.16115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57170:708..884+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAACCACAACCACGACGCCGCCACACCGCAAACCCCAGGTGCTGGT CTGCACGTCCACCCTCGCGTGGGGAGTGAACTTCCCGGCTCACCTGGTGG TGGTCAAGGGGACCGAGTTCTTCGACGGAAAGAGTCAGCGCTACGTCGAC TTCCCCATCACTGACCTCCTCCAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57170:708..884+

>mRNA_Ecto-sp13_S_contig57170.16115.1 ID=mRNA_Ecto-sp13_S_contig57170.16115.1|Name=mRNA_Ecto-sp13_S_contig57170.16115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57170:708..884+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAACCACAACCACGACGCCGCCACACCGCAAACCCCAGGTGCTGGT
CTGCACGTCCACCCTCGCGTGGGGAGTGAACTTCCCGGCTCACCTGGTGG
TGGTCAAGGGGACCGAGTTCTTCGACGGAAAGAGTCAGCGCTACGTCGAC
TTCCCCATCACTGACCTCCTCCAGGTT
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