mRNA_Ecto-sp13_S_contig5717.16114.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5717.16114.1
Unique NamemRNA_Ecto-sp13_S_contig5717.16114.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5717.16114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5717contigEcto-sp13_S_contig5717:2124..2707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size584
Hectar predicted targeting categorysignal peptide
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.43239-UTR-Ecto-sp13_S_contig5717:2123..21841681463792.43239-UTR-Ecto-sp13_S_contig5717:2123..2184Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5717 2124..2184 +
1681463792.4586475-UTR-Ecto-sp13_S_contig5717:2568..27071681463792.4586475-UTR-Ecto-sp13_S_contig5717:2568..2707Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5717 2569..2707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.445941-CDS-Ecto-sp13_S_contig5717:2184..25681681463792.445941-CDS-Ecto-sp13_S_contig5717:2184..2568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5717 2185..2568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5717.16114.1prot_Ecto-sp13_S_contig5717.16114.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5717 2185..2568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5717.16114.1

>prot_Ecto-sp13_S_contig5717.16114.1 ID=prot_Ecto-sp13_S_contig5717.16114.1|Name=mRNA_Ecto-sp13_S_contig5717.16114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MSSWCRLLLLLRTAASVGCMILRQSSCVFFERLQLRYCCPMSFVARMQQV
SCRGTTCRMLQLLDVILTPRIRCVLPSVALLITCSYWGHGETSMQHAERA
HPRVQTLWPIWAGGVGVRLNGGKNGIP*
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mRNA from alignment at Ecto-sp13_S_contig5717:2124..2707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5717.16114.1 ID=mRNA_Ecto-sp13_S_contig5717.16114.1|Name=mRNA_Ecto-sp13_S_contig5717.16114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=584bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5717:2124..2707+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCATTAGAAATAGCGTGAGCTTGAGCTTTCTCCCCAAAGCGAAAGAGG
CATATTTGTCCATGTCATCGTGGTGCAGGCTACTGCTGCTGCTACGTACG
GCAGCATCCGTGGGGTGCATGATCCTGCGACAATCGTCGTGTGTGTTCTT
TGAACGGCTCCAGCTCCGCTACTGCTGCCCTATGAGCTTTGTAGCACGTA
TGCAACAAGTGTCGTGTCGTGGAACCACGTGCCGGATGTTGCAACTACTA
GATGTCATCCTTACGCCGAGGATCAGGTGTGTGTTGCCGTCGGTAGCTCT
GTTAATTACCTGCTCTTATTGGGGGCATGGAGAGACAAGTATGCAGCACG
CAGAACGCGCACATCCTCGAGTACAAACCCTGTGGCCAATCTGGGCAGGT
GGGGTGGGTGTAAGGCTAAACGGAGGAAAAAACGGTATCCCATGACATGA
GCTGAAACGCCAATGAAAGTCGATACAGCAAACGGTTACTCTTGTTCTGC
CATATCGAGAAAACACGCTTGGCGTCCGAAGGACTACCCGCTCGAGCGAG
TACTCGAGAGGATGAGCTGGGGCCTTCACCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5717:2124..2707+

>mRNA_Ecto-sp13_S_contig5717.16114.1 ID=mRNA_Ecto-sp13_S_contig5717.16114.1|Name=mRNA_Ecto-sp13_S_contig5717.16114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5717:2124..2707+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCGTGGTGCAGGCTACTGCTGCTGCTACGTACGGCAGCATCCGT
GGGGTGCATGATCCTGCGACAATCGTCGTGTGTGTTCTTTGAACGGCTCC
AGCTCCGCTACTGCTGCCCTATGAGCTTTGTAGCACGTATGCAACAAGTG
TCGTGTCGTGGAACCACGTGCCGGATGTTGCAACTACTAGATGTCATCCT
TACGCCGAGGATCAGGTGTGTGTTGCCGTCGGTAGCTCTGTTAATTACCT
GCTCTTATTGGGGGCATGGAGAGACAAGTATGCAGCACGCAGAACGCGCA
CATCCTCGAGTACAAACCCTGTGGCCAATCTGGGCAGGTGGGGTGGGTGT
AAGGCTAAACGGAGGAAAAAACGGTATCCCATGA
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