mRNA_Ecto-sp13_S_contig57139.16110.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57139.16110.1
Unique NamemRNA_Ecto-sp13_S_contig57139.16110.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig57139.16110.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 7.580e-19
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 LSDATTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDS 132
            LSD TTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDS
Sbjct:   95 LSDPTTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDS 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57139.16110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5P0_ECTSI7.580e-1997.73SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57139contigEcto-sp13_S_contig57139:750..881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.2207675-CDS-Ecto-sp13_S_contig57139:749..8811681463792.2207675-CDS-Ecto-sp13_S_contig57139:749..881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57139 750..881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57139.16110.1prot_Ecto-sp13_S_contig57139.16110.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57139 750..881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57139.16110.1

>prot_Ecto-sp13_S_contig57139.16110.1 ID=prot_Ecto-sp13_S_contig57139.16110.1|Name=mRNA_Ecto-sp13_S_contig57139.16110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
LSDATTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDS
back to top

mRNA from alignment at Ecto-sp13_S_contig57139:750..881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57139.16110.1 ID=mRNA_Ecto-sp13_S_contig57139.16110.1|Name=mRNA_Ecto-sp13_S_contig57139.16110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57139:750..881+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCGGACGCAACGACCGAGGCGCGGAGCCCGCCCTACGAAGTCCTGGA
GACCCCCGACGCCGCCACGCTCATCGTAGACCTTCCGGGGTGCAAGAAGG
AAGACGTCGACGCACAGGTCTCCGAAGACTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57139:750..881+

>mRNA_Ecto-sp13_S_contig57139.16110.1 ID=mRNA_Ecto-sp13_S_contig57139.16110.1|Name=mRNA_Ecto-sp13_S_contig57139.16110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57139:750..881+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCGGACGCAACGACCGAGGCGCGGAGCCCGCCCTACGAAGTCCTGGA
GACCCCCGACGCCGCCACGCTCATCGTAGACCTTCCGGGGTGCAAGAAGG
AAGACGTCGACGCACAGGTCTCCGAAGACTCC
back to top