mRNA_Ecto-sp13_S_contig57126.16108.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57126.16108.1
Unique NamemRNA_Ecto-sp13_S_contig57126.16108.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: D8LE27_ECTSI (Autophagy-related protein 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE27_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.720e-42
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1
Query:   25 VLQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVAS 261
            +LQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVAS
Sbjct: 2025 LLQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVAS 2103          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A835YJZ3_9STRA (Autophagy-related protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.400e-25
Identity = 47/78 (60.26%), Postives = 66/78 (84.62%), Query Frame = 1
Query:   22 AVLQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRV 255
            A L+SWV+D+T +QLHKFLAGT AVRPLV +G+G+ADLVL+P++QY+RDG++LRG+RKGT      +  ETL+TS+++
Sbjct:  162 ACLESWVRDVTGSQLHKFLAGTAAVRPLVNVGRGMADLVLVPLKQYKRDGKILRGIRKGTAQCAGRVLAETLNTSYKL 239          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A1V9ZLL8_9STRA (Autophagy-related protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLL8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.810e-21
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   28 LQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            L SWVQDI+ +Q+HK LA    +R +  +G G ADL+LLP+ QY +D RV+RGLRKG +SFL+++TIETL+T+ RVA
Sbjct: 1685 LLSWVQDISRHQIHKCLASVVPMRSITNIGAGAADLILLPMAQYGKDRRVVRGLRKGAKSFLKSVTIETLNTASRVA 1761          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A067CPJ1_SAPPC (CP-type G domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CPJ1_SAPPC)

HSP 1 Score: 95.1 bits (235), Expect = 6.830e-21
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   28 LQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            L SWVQDI+ +Q+HK LA    +R +  +G G ADL+LLP+ QY +D RV+RGLRKG +SFL+++TIETL+T+ RVA
Sbjct: 1695 LLSWVQDISRHQIHKCLASVVPMRSITNIGAGAADLILLPMAQYGKDRRVVRGLRKGAKSFLKSVTIETLNTASRVA 1771          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A1V9ZZI2_9STRA (Autophagy-related protein 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZI2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.220e-20
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   16 LAAVLQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            L   +  WV+DI+ +Q+HK LA    +R +  +G G ADL+LLP+ QY +D RV+RGLRKG +SFL+++TIETL+T+ RVA
Sbjct: 1725 LQQTMVRWVEDISRHQIHKCLASVVPMRSITNIGAGAADLILLPMAQYGKDRRVVRGLRKGAKSFLKSVTIETLNTASRVA 1805          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A3F2RU62_9STRA (Autophagy-related protein 2 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU62_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   25 VLQSWVQDITTNQLHKFLAGTTA--VRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            VL SWVQDI+ +Q+HK +A  +   +RP V +G G ADL+LLP++ Y RD R++RGL+KG  SFL+++TIETL+T+ +VA
Sbjct: 1253 VLISWVQDISRHQIHKCVASVSMPPLRPFVNIGAGAADLILLPIEHYGRDRRLVRGLKKGASSFLKSVTIETLNTASKVA 1332          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: M4BBC8_HYAAE (Autophagy-related protein 2 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BBC8_HYAAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.520e-19
Identity = 43/80 (53.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   25 VLQSWVQDITTNQLHKFLAGTTA--VRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            VL SWVQDI+  Q+HK +A  +   +RP V +G G ADL+LLP++ Y RD R++RG++KG  SFLR++TIETL+T+ +VA
Sbjct: 1208 VLVSWVQDISRRQIHKCVASVSMPPLRPFVNIGAGAADLILLPMEHYGRDRRLVRGMKKGASSFLRSVTIETLNTASKVA 1287          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A6G0WUQ4_9STRA (Autophagy-related protein 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUQ4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.090e-19
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   37 WVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            WVQDI+ +Q+HK LA    +R +  +G G ADL+LLP+ QY +D RV+RGLRKG  SFLR++TIETL+T+ ++A
Sbjct: 1653 WVQDISRHQIHKCLASVVPMRSITNIGAGAADLILLPMAQYGKDRRVVRGLRKGATSFLRSVTIETLNTASKLA 1726          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A418DBW1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DBW1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.330e-19
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   28 LQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            L  WVQDI+ +Q+HK LA    +R L  +G G ADL+LLP+ QY +D RV+RGLRKG  SFL+++TIETL+T+ ++A
Sbjct:  287 LVHWVQDISRHQIHKCLASVVPMRSLSNIGAGAADLILLPMAQYGKDRRVVRGLRKGATSFLKSVTIETLNTASKLA 363          
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Match: A0A662Y9D1_9STRA (Autophagy-related protein 2 (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y9D1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.810e-19
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   25 VLQSWVQDITTNQLHKFLAGTTA--VRPLVTMGKGVADLVLLPVQQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVA 258
            VL SWVQDI+ +Q+HK +A  +   +RP   +G G ADL+LLP++ Y RD R++RGL+KG  SFL+++TIETL T+ +VA
Sbjct:   54 VLLSWVQDISRHQIHKCVASVSMPPLRPFANIGAGAADLILLPMEHYGRDRRLVRGLKKGASSFLKSVTIETLTTASKVA 133          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57126.16108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE27_ECTSI1.720e-4298.73Autophagy-related protein 2 n=2 Tax=Ectocarpus Tax... [more]
A0A835YJZ3_9STRA1.400e-2560.26Autophagy-related protein 2 n=1 Tax=Tribonema minu... [more]
A0A1V9ZLL8_9STRA6.810e-2157.14Autophagy-related protein n=1 Tax=Achlya hypogyna ... [more]
A0A067CPJ1_SAPPC6.830e-2157.14CP-type G domain-containing protein n=1 Tax=Saprol... [more]
A0A1V9ZZI2_9STRA8.220e-2051.85Autophagy-related protein 2 n=1 Tax=Thraustotheca ... [more]
A0A3F2RU62_9STRA1.120e-1953.75Autophagy-related protein 2 n=4 Tax=Phytophthora k... [more]
M4BBC8_HYAAE1.520e-1953.75Autophagy-related protein 2 n=1 Tax=Hyaloperonospo... [more]
A0A6G0WUQ4_9STRA2.090e-1955.41Autophagy-related protein 2 n=1 Tax=Aphanomyces eu... [more]
A0A418DBW1_9STRA2.330e-1954.55Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A662Y9D1_9STRA2.810e-1952.50Autophagy-related protein 2 (Fragment) n=2 Tax=Not... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57126contigEcto-sp13_S_contig57126:180..881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score156.4
Seed ortholog evalue6.2e-36
Seed eggNOG ortholog2880.D8LE27
Model size261
KEGG koko:K17906
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG2993@1,KOG2993@2759
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.105776-CDS-Ecto-sp13_S_contig57126:179..2841681463792.105776-CDS-Ecto-sp13_S_contig57126:179..284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57126 180..284 +
1681463792.1188705-CDS-Ecto-sp13_S_contig57126:725..8811681463792.1188705-CDS-Ecto-sp13_S_contig57126:725..881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57126 726..881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57126.16108.1prot_Ecto-sp13_S_contig57126.16108.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57126 180..881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57126.16108.1

>prot_Ecto-sp13_S_contig57126.16108.1 ID=prot_Ecto-sp13_S_contig57126.16108.1|Name=mRNA_Ecto-sp13_S_contig57126.16108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MRSHALAAVLQSWVQDITTNQLHKFLAGTTAVRPLVTMGKGVADLVLLPV
QQYRRDGRVLRGLRKGTQSFLRAITIETLHTSHRVAS
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mRNA from alignment at Ecto-sp13_S_contig57126:180..881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57126.16108.1 ID=mRNA_Ecto-sp13_S_contig57126.16108.1|Name=mRNA_Ecto-sp13_S_contig57126.16108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57126:180..881+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTCTCATGCTTTGGCGGCCGTTTTGCAGTCGTGGGTGCAAGACAT CACCACCAACCAACTGCACAAGTTCCTTGCCGGGACTACGGCCGTCCGCC CGCTGGTGAGTACGCTAAACCTACACCTACGTTTCAATTACGCTGCGGTA GTGAGCACTGGTTTGCACACGCCCTAGGAGAAGTGGTGCTGCTGTACGTA TCGGTGAATGTCGTCAGTCGCGTTTTCTCCGAGCCCAAGCGCTAGGTGCG TTTTGCGCGTTTTTCCGCAGGGTTTCTTCGAAGTGCGTGAGCATGTCCCC GCGCGGGAGGATTTGGAGGGCGAAGGACAGGATATTTTCACTTTGTTTTC GAAACTCAACTCTAGTGCACGCGAAAGATTCGCAGTACTCTGGGCCGTCT TGTTTAGAACGAATCACCGGTCAAGGCGGTAAGAGCCTAGGCACGAGAGG AGTTCTTTCTGCATGGGCGTCTTCTTGAGAGCGTGAGAAACGTGTGCGCT CATCATCAAACGGGTTGCATACGCCTTATTGAACACACCTGCCCAGGTTA CCATGGGCAAGGGTGTGGCCGACCTCGTACTTCTGCCCGTGCAGCAGTAT CGGCGCGACGGGCGAGTGTTGCGGGGCTTGCGTAAGGGCACCCAGTCTTT CCTTCGAGCGATCACGATCGAAACTCTGCACACCTCGCACCGCGTCGCGA GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57126:180..881+

>mRNA_Ecto-sp13_S_contig57126.16108.1 ID=mRNA_Ecto-sp13_S_contig57126.16108.1|Name=mRNA_Ecto-sp13_S_contig57126.16108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57126:180..881+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTCTCATGCTTTGGCGGCCGTTTTGCAGTCGTGGGTGCAAGACAT
CACCACCAACCAACTGCACAAGTTCCTTGCCGGGACTACGGCCGTCCGCC
CGCTGGTTACCATGGGCAAGGGTGTGGCCGACCTCGTACTTCTGCCCGTG
CAGCAGTATCGGCGCGACGGGCGAGTGTTGCGGGGCTTGCGTAAGGGCAC
CCAGTCTTTCCTTCGAGCGATCACGATCGAAACTCTGCACACCTCGCACC
GCGTCGCGAGC
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