mRNA_Ecto-sp13_S_contig57086.16092.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57086.16092.1
Unique NamemRNA_Ecto-sp13_S_contig57086.16092.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: D7G0P8_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.050e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR
Sbjct:  277 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 325
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: A0A259M7B5_9GAMM (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Marinobacter sp. 34-60-7 TaxID=1970395 RepID=A0A259M7B5_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 3.500e-16
Identity = 35/49 (71.43%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            Q+TGQPSVLYYADTIF+DVG+D+ AS+ ++ FKL+ATLCA F VDK+GR
Sbjct:  378 QITGQPSVLYYADTIFKDVGVDAVASIGISLFKLLATLCATFNVDKYGR 426
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: A0A7S2UXZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXZ9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.840e-16
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            QVTGQPSVLYYADTIF+DVGLDS ASVL   FKLVATL AV TVD  GR
Sbjct:  305 QVTGQPSVLYYADTIFKDVGLDSVASVLTGTFKLVATLYAVATVDSQGR 353
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: A0A836CC74_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC74_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.340e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            Q+TGQPSVLYYAD+IF DVGL S +S+ + AFKL+ATL AVFT DK GR
Sbjct:  273 QITGQPSVLYYADSIFADVGLSSLSSIFIGAFKLLATLTAVFTADKRGR 321
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: A0A835ZBD5_9STRA (General substrate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.350e-15
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 VTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            VTGQPSVLYYA+TIF DVGL S+ASVL+ AFKL ATL AV + DKHGR
Sbjct:  279 VTGQPSVLYYANTIFADVGLSSAASVLIGAFKLFATLGAVLSADKHGR 326
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: A0A7S3K2Y6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2Y6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.120e-15
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            Q+TGQPSVLYYAD+IFED G+ + A+V V  FKL+ATL AVFT+DK+GR
Sbjct:  288 QLTGQPSVLYYADSIFEDAGIGAIATVFVGIFKLIATLLAVFTIDKYGR 336
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: A0A8J2WU70_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WU70_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.740e-12
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            Q TGQPSVLYYA  IF+  G+ + ASV V  FKLVATL AV TVDKHGR
Sbjct:  302 QFTGQPSVLYYAGAIFDAAGVGAVASVAVGVFKLVATLGAVATVDKHGR 350
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: A0A7S2FR46_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FR46_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            QVTGQPS+LYYA+TIF++ G+ S A+VL   FKL ATL +V  VDK+GR
Sbjct:  290 QVTGQPSILYYANTIFKEAGMSSYAAVLTGVFKLFATLGSVVLVDKYGR 338
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: B7FX34_PHATC (TRD4 (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FX34_PHATC)

HSP 1 Score: 65.9 bits (159), Expect = 2.730e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            Q+TGQPSVL YA  IF D GL  SA VL+A FKL+ATL A  TV+K+GR
Sbjct:  289 QITGQPSVLSYATPIFRDAGLSDSAPVLLALFKLLATLSAAVTVEKYGR 337
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BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Match: F0Y6Q9_AURAN (General sugar transporter n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q9_AURAN)

HSP 1 Score: 65.1 bits (157), Expect = 5.110e-11
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR 147
            Q+TGQPSVLYYA TIF+  G+ + A+V V  FKL ATL AV TVD+ GR
Sbjct:  283 QLTGQPSVLYYASTIFDAAGIGTVATVFVGVFKLFATLFAVVTVDRRGR 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57086.16092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0P8_ECTSI2.050e-23100.00MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A259M7B5_9GAMM3.500e-1671.43ABC transmembrane type-1 domain-containing protein... [more]
A0A7S2UXZ9_9STRA4.840e-1681.63Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CC74_9STRA4.340e-1571.43Major facilitator superfamily domain-containing pr... [more]
A0A835ZBD5_9STRA4.350e-1577.08General substrate transporter n=1 Tax=Tribonema mi... [more]
A0A7S3K2Y6_9STRA8.120e-1569.39Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2WU70_9STRA5.740e-1269.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2FR46_9STRA1.070e-1163.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B7FX34_PHATC2.730e-1165.31TRD4 (Fragment) n=2 Tax=Phaeodactylum tricornutum ... [more]
F0Y6Q9_AURAN5.110e-1163.27General sugar transporter n=1 Tax=Aureococcus anop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57086contigEcto-sp13_S_contig57086:668..817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score99.4
Seed ortholog evalue5.1e-19
Seed eggNOG ortholog2880.D7G0P8
Preferred nameVGT1
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005351,GO:0005353,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0007275,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009705,GO:0009791,GO:0009845,GO:0009909,GO:0009911,GO:0009941,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0015755,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034219,GO:0034220,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051119,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0055085,GO:0065007,GO:0071702,GO:0090351,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:1902600,GO:1904659,GO:2000026,GO:2000241,GO:2000243
Exons1
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
Cds size150
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.91052-CDS-Ecto-sp13_S_contig57086:667..8171681463790.91052-CDS-Ecto-sp13_S_contig57086:667..817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57086 668..817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57086.16092.1prot_Ecto-sp13_S_contig57086.16092.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57086 668..817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57086.16092.1

>prot_Ecto-sp13_S_contig57086.16092.1 ID=prot_Ecto-sp13_S_contig57086.16092.1|Name=mRNA_Ecto-sp13_S_contig57086.16092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
QVTGQPSVLYYADTIFEDVGLDSSASVLVAAFKLVATLCAVFTVDKHGR*
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mRNA from alignment at Ecto-sp13_S_contig57086:668..817-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57086.16092.1 ID=mRNA_Ecto-sp13_S_contig57086.16092.1|Name=mRNA_Ecto-sp13_S_contig57086.16092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57086:668..817- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACCGGTCAGCCCAGCGTCCTCTACTACGCGGACACGATTTTCGA
GGACGTTGGCCTGGACAGCAGCGCTTCGGTCCTTGTCGCTGCCTTCAAGC
TCGTCGCCACGCTCTGTGCGGTGTTCACGGTGGACAAGCACGGGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57086:668..817-

>mRNA_Ecto-sp13_S_contig57086.16092.1 ID=mRNA_Ecto-sp13_S_contig57086.16092.1|Name=mRNA_Ecto-sp13_S_contig57086.16092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57086:668..817- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACCGGTCAGCCCAGCGTCCTCTACTACGCGGACACGATTTTCGA
GGACGTTGGCCTGGACAGCAGCGCTTCGGTCCTTGTCGCTGCCTTCAAGC
TCGTCGCCACGCTCTGTGCGGTGTTCACGGTGGACAAGCACGGGAGGTGA
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