mRNA_Ecto-sp13_S_contig5705.16088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5705.16088.1
Unique NamemRNA_Ecto-sp13_S_contig5705.16088.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5705.16088.1 vs. uniprot
Match: A0A6H5KTD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD5_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.120e-33
Identity = 65/69 (94.20%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:  109 MEVETGIDGNISNAQKKLGGRVTATYKKISKTAGARPRMISDAVRHDLMDGIGHFISQGSMSFSSFRDV 315
            MEVETGIDG+ISNAQK+LGGRVTATY+KISKTAG+RPRMISDAVRHDLMDGIGHFISQGSMSFSSFRDV
Sbjct:    1 MEVETGIDGDISNAQKQLGGRVTATYRKISKTAGSRPRMISDAVRHDLMDGIGHFISQGSMSFSSFRDV 69
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BLAST of mRNA_Ecto-sp13_S_contig5705.16088.1 vs. uniprot
Match: D7G2A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.280e-32
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:  109 MEVETGIDGNISNAQKKLGGRVTATYKKISKTAGARPRMISDAVRHDLMDGIGHFISQGSMSFSSFRDV 315
            MEVETGI+G++SNAQK+LGGRVTATY+KISKTAGARPRMISDAVRHDLMDGIG FISQGSMSFSSFRDV
Sbjct:    1 MEVETGINGDVSNAQKQLGGRVTATYRKISKTAGARPRMISDAVRHDLMDGIGQFISQGSMSFSSFRDV 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5705.16088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTD5_9PHAE1.120e-3394.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2A2_ECTSI3.280e-3291.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5705contigEcto-sp13_S_contig5705:6736..7525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size316
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.6772509-CDS-Ecto-sp13_S_contig5705:6735..70171681463790.6772509-CDS-Ecto-sp13_S_contig5705:6735..7017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5705 6736..7017 +
1681463790.689365-CDS-Ecto-sp13_S_contig5705:7492..75251681463790.689365-CDS-Ecto-sp13_S_contig5705:7492..7525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5705 7493..7525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5705.16088.1prot_Ecto-sp13_S_contig5705.16088.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5705 6736..7525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5705.16088.1

>prot_Ecto-sp13_S_contig5705.16088.1 ID=prot_Ecto-sp13_S_contig5705.16088.1|Name=mRNA_Ecto-sp13_S_contig5705.16088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
SFVLSSRAQHYCTRYATPCIEARHCRIGFIVVRGDGMEVETGIDGNISNA
QKKLGGRVTATYKKISKTAGARPRMISDAVRHDLMDGIGHFISQGSMSFS
SFRDV
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mRNA from alignment at Ecto-sp13_S_contig5705:6736..7525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5705.16088.1 ID=mRNA_Ecto-sp13_S_contig5705.16088.1|Name=mRNA_Ecto-sp13_S_contig5705.16088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=790bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5705:6736..7525+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTTTGTGCTTTCCTCGCGCGCTCAACACTACTGTACCCGCTACGCCAC
CCCGTGCATTGAGGCCCGACATTGTAGGATTGGGTTCATTGTTGTAAGAG
GTGACGGAATGGAAGTGGAGACCGGAATCGATGGGAATATCAGCAATGCT
CAGAAGAAGCTTGGCGGCCGGGTGACCGCCACCTACAAAAAGATCTCCAA
GACGGCCGGTGCGAGACCACGAATGATTAGCGACGCCGTTCGTCATGATT
TAATGGATGGAATCGGGCACTTCATCTCGCAGGTGTGTCGAATTATAGCT
GGAAGAATGTGAACAAAAGAAAAAAATCACAAATTCTTAAACAAGTCATT
GCCATGTATCAGACCGCGTGTGCCACCTCATGAGGTTTGCGCGATTGCAG
CTGCAAGGGCGCCAGGATATCGTACCAGAGTATGAGCTTGGCGTTCCTTC
TCTCGATTCACAGACCTCAACCTAGATCGAACGATTCTGCTCAACAACGG
AGCTGCAGAGGTCGCATTGCCAAAATCCCGTTCCACCCGATACTACAGCA
GTATCCTGCGTGGCCCCAATCTACAGATAGAATCCGATCAGAACTCCGCC
ATTATTGCGGCGGTGTTTTCCCGTTACCACTGATTATGTAGCGTCGATTC
CTCACAGCCGGTTGGTACAGCAGTCGAATATTTTCGAAAGGAAAAGTGTG
GATAATCACAAGAACGCCGCTGCCTTTACTTGTCTGCGTGCTGACCGTCG
CCGACAGGGTAGTATGAGCTTCTCGAGTTTCCGCGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5705:6736..7525+

>mRNA_Ecto-sp13_S_contig5705.16088.1 ID=mRNA_Ecto-sp13_S_contig5705.16088.1|Name=mRNA_Ecto-sp13_S_contig5705.16088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5705:6736..7525+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTTTGTGCTTTCCTCGCGCGCTCAACACTACTGTACCCGCTACGCCAC
CCCGTGCATTGAGGCCCGACATTGTAGGATTGGGTTCATTGTTGTAAGAG
GTGACGGAATGGAAGTGGAGACCGGAATCGATGGGAATATCAGCAATGCT
CAGAAGAAGCTTGGCGGCCGGGTGACCGCCACCTACAAAAAGATCTCCAA
GACGGCCGGTGCGAGACCACGAATGATTAGCGACGCCGTTCGTCATGATT
TAATGGATGGAATCGGGCACTTCATCTCGCAGGGTAGTATGAGCTTCTCG
AGTTTCCGCGACGTG
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