mRNA_Ecto-sp13_S_contig5693.16068.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5693.16068.1
Unique NamemRNA_Ecto-sp13_S_contig5693.16068.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5693.16068.1 vs. uniprot
Match: A0A6H5KTY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.470e-17
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 2 
Query:  428 MRLRPGFLKPQASPRTTSNASTLPTNDDGRGRDYGPAAAGGEGKRHSR 571
            MRLRPGFLKPQ SPRTTSNA TLPTNDDGRG DYGPAAAGG GKRHS+
Sbjct:    1 MRLRPGFLKPQTSPRTTSNAGTLPTNDDGRGIDYGPAAAGGVGKRHSK 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5693.16068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTY4_9PHAE8.470e-1789.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5693contigEcto-sp13_S_contig5693:1077..5547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size571
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.9724631-CDS-Ecto-sp13_S_contig5693:1076..12201681463787.9724631-CDS-Ecto-sp13_S_contig5693:1076..1220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5693 1077..1220 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.9841254-UTR-Ecto-sp13_S_contig5693:1220..12501681463787.9841254-UTR-Ecto-sp13_S_contig5693:1220..1250Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5693 1221..1250 -
1681463787.9957118-UTR-Ecto-sp13_S_contig5693:5150..55471681463787.9957118-UTR-Ecto-sp13_S_contig5693:5150..5547Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5693 5151..5547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5693.16068.1prot_Ecto-sp13_S_contig5693.16068.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5693 1077..1220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5693.16068.1

>prot_Ecto-sp13_S_contig5693.16068.1 ID=prot_Ecto-sp13_S_contig5693.16068.1|Name=mRNA_Ecto-sp13_S_contig5693.16068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MRLRPGFLKPQASPRTTSNASTLPTNDDGRGRDYGPAAAGGEGKRHSR
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mRNA from alignment at Ecto-sp13_S_contig5693:1077..5547-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5693.16068.1 ID=mRNA_Ecto-sp13_S_contig5693.16068.1|Name=mRNA_Ecto-sp13_S_contig5693.16068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5693:1077..5547- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACAGGTTACCCTACAGCCGTTATACTGGGTAATCATCGGACCACGG
ACCACGCGCGCTTCGTGGTGTTCCTATGCTCCCGGGATCGTTGTAAGGGG
CTGTGGAGTAGTGACGGAGGCTTGCGCCGTCTCGAAAGCTCGGTCCTACA
GGCGGGGGGACAATTGCTACGCGCCCTCGGGACTCGGGGTGTTTTTGTGA
GGAGAGGAGCAACAACAAGCACTCGACAGCACCGCCAACCACGGAAGGGG
CCGGCCAACTCTCTCTCTCAAGTCGACGGAACTTTGGGTTTTTGCCTGAG
CAAATAGTCATCGGGCCAGGGTAGGATCAGAGCCAGCGGCAGCACCACTG
GCAGCAGCGGCAGGGCATCATCATCATCGCAAGCTGGCACCCCGCAGGTC
AGGGTCGTCTTCCGTCTGTCGTCACAAATGTGAAGCTCTGGGTACTGACT
GAGGTGGCGGTGAAATGTTGCCGCGCTCAATCAACATCAACATACCGCTT
CCCTTTCCGCCAACCAACACTCACTACGCATCTTCGCAAGCAGCGGCTGC
AGTCAAGCAGGGTGCAGAACCATTGGAAATCCGTTGTATCCACCCTTGAC
ACTAGCGAAGCCGCGCCTTGCCGTGCCCGCTCCGCAGCTGGTGCGGTAGC
AATTTTTGATCTACGCACACATGACACACTCAAACAACTGCAAGTGAGTC
AGCACTGACAAAGTGTGGGGAAAGTTGTGTTGTGTGTTTTTGCGCACGAG
TAGCATGTGTATCGTGCCGCTACCCGGGTAGATCTGATACAGGAAGGCCG
GCCTTTATGTAGCTATTTTTTTGTCTTGCATCCCGGCTGCATCCATGGCA
TATGTACACAAAGTACGTGCGTGCATGACATGGCGCCACACGGCAGCAAT
CCTCCGTGTTTGTGCTCTTGCGGCCATGCATCCTTTGGCATACACACTTG
GACAGCACTAGATGCGCACCAGAAGCGCACGACACAGCAGACTCTGCTTT
GGCTGTCCTTGTCGTCCACATCGCATTGGTCTTACGTACAACCTTCAATA
ACTACTCCGAATTGTCCCTTTGTTTCTCGTCGACCTTGCCGAATATTTAC
TCGCCTATCGATCTAAAATCCGAAAGATACTACTCCTACAAATATGTACT
TGTATGATGGCTGAATCCCCATCCTTCCGCTGTACGCCGCCACAAGTGTA
TTGTTGAAAATAATTTCATTTAAGCATATATGCGTACGATTGTTTGGATG
CGAACTGCTGCCGCTGTCCTCTGGAAAGGTGACCGGGGGGGGGGGTAGAG
GGGGGTCGGTGTTACTGCGGCTTTCCATCAATAGCCCAGCAGCGCCGTGT
ACCAAAAGCCTTGGTTCCTCTTCGGCATCGTATTGCTATATATGAGCAGG
TCGTTTTCGTCTCGTTTAGAGCCTGTATGTGCGGGGAAAATGTAAATTTC
TTCCCATTTCCGTCTTCTGTTGTTTGCTAAACAGAGAAGCATCAACTACG
CGCCCCTTCGTCTCGTCATGAAACACCGTTAAAATTTTGAAGTAACACAT
AGCGAAAGGAGTGTGATTACTCGTACTTCAACCCGTTGTTTTTTGCGGGC
GATCGTCCCCCCGGACGTCGTCTACTCTCCGACCACAACAATATGCATGT
GTCTCACGTGATGCTCGCGTTTCTGTATTTTTCAACACCCAGTATACTGC
TGGATGGATGTGAGGACAACTAGTGTAACCAGATACTTCTGTAGTAACCA
GAGCAGTTGTGGGATAGGTGGTGGAACCGGAACTAAACTAAGAACGACAT
TATATTTCTCTCGGGTTTGTAGCTGGACGGACTGCATCATCAGCAAATAA
CCGCCCCTTCCACGGCGTTTTGCTGTCCGAGTACATCACTTACCAATTCT
CGGTGGGGGCTCAATTTATTCCACAGAAGGGCGGGCTGTGATGGAAGAGG
TGAGCGCTATTTCTCCAAAGCTCTCGACGAGTGCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCCCTCTCTGCTAAAGATTTTTCTACAGTCGACCCTCT
TTTTTCCCCGAAAGAACCCGCGCCTCATTCACTCGGTTTTGGACACACCG
CCGCATAGCGATGCATACAACACAGCATGTCTTCACCCACGGCTCTACGG
TTGGAATTCCCGCGTACGCAGACGTACGTTCTTGCGCACACGCTCTCGCG
CAGTCTAATAGGATGCGAGCTTGCAATATGCACATCAGGAGAGCAAACGA
AATGCTCTATTTAGTCTCCCCCCCCCCCAGGCGTAGAGCCTGATATTTGA
GACTGCGGGGGCTTTTTTGAGAGAGCAGGACTTCTGCTGTGCCAGTGCCA
ACCCGGAGTTCCGGCGTTCGTTGCAACTGAGTTCTGCTGCCACAAAAAGC
AGAGAGAGGTTATCCAATCAGTTTGCGTCATTTTAGAAAATGTTTGTGGT
ACCACACAATCACAGAAAGGGCTTTGTTGCCACAGCCTCCCCAAGCCTAG
ACTACAGCAGTACAGAATTCGCCACCTATTATGTTAGTCGACGGTTCGTC
AGTGCACAACTGAGCACTGAGCACCTGTTCTTAGTTGTAAGATGTTGGAT
TTGTGAAGGCTCAAGTCGTCCCTAACTGCTACCATCTAGGTGCCGCCTTC
TTTTCTGTAGTTTCGAGTCCCACTAGAGAACCGTTTTGATTTATTCGGGC
AGAACGAGCGCTCTTGAAGCGACGGGTAGGCCTCAGGGGTGATTGGGTAG
TCTCGAACGCAACAAACGATGTGGAGGGTAAAAATAAAATGCGCGTGTCT
GTCTGTCCGTCTCCGTCCATCCCCACCTCCACGCCCAATTTGGCGGTAAC
TTACCCATGAACAGCTGACCGCACCCCCCCGGCGAAACAAAATACCATGT
GCAGACATGTACATGCATAGATATCCACATGATGTGCTAAAAAAAATGCT
ACAGTTTGTATATAACACTTTCTAATGTGTGGAGCTGCTTGTGTCGTATC
ATACTTGCAAACGCCAGAAAGGGCAAGTATGTTAGTGTCGTAGAAGTGTT
AGTTTATATCCATGTGTAGAGAGAACGGAACAGTTGTATGTTGTATTTAT
GTGAAGACAACGACAACAATGTTTGCACCAACCATTGGTTTCGATTCGAC
CCAGCAGCGAAGGGACTTCTGTTTTTCGGTCAACAACAACGGGCGGAGAC
TGTTGTCATTCCGCTACTACAATGTTCCGAGGGTAGGACTGGCGGGAGGG
CGGGAGGGCGGCTTTTTGTGCGGTTTGACGTGATTGTTTTGAGGCAAAAC
AAGAGAGGTGCGAGAGGGGTCCAAAAAGAGCGTTGACCTACAGCGGCACT
GCTGCTTGTAGAGCGGGAGCGAGCGGTTTCCGCGAACAGATGGTCCGGCC
ACCCTCGTGTGTCCAGCAAGAAACCGTCTATCCAGAAAGCCCACGCGAAG
TGACCAGTTCTGTCTCAACTTTTGCGATCCCTCGAATGTTCATGGTGTCC
GATGATCTGTGTTATTATATCTGACGTGTCTGTCGTCATCGGCCCTTTAC
TCGTACGTGTCCGTAAGTCATGGAACCTAACTTCGCCGTTATACTCACCA
TCCACCACCGGCGCGCTGTTTTTGACCGATCGGTTCCTGTTTTGAGAGAA
TATGCATAAGTGTACGTAAACCTGTACGATCGATGTACAGAAAAAAGACT
ACCCGTTCTCACCAAACGGATTTGAACCTGCCCGGCCTCATGAATCCTAC
ACTCTTCCGACACGATAGGTGTTCATAATTTAGGGCGCGTAGGACGCGTC
ATGGATCCCCCGCTCTTCCAAAGCTTGTCGGCCGTCCGTACGTGTACGTA
CATATGAATCCTACTGCTGTACCTTCCAATCATCCACGGCAATCATACAA
AAGCAGTTCCTTGGAACAATCCGGAAAGATGACCCCGCTGCAGAGAGTGA
GACAACTAGTTTGTTCCTTCAGATAATCATTGTTTCACACCGTTTCACCG
GCGCTGCTCGGGCCAGTGGTAGGCACTCTTCAACCGGCACCATTGAGGGC
CCCCTACTACCGTAATAAGCCGCCTTTGGCAAACTGCGTACGTATATGCC
TTAGAAGGAACGATTGTCTATCCGTGATTGGCCCTGTGGAATCAAAATTC
TCCGTCCGTCCTCTCGAGGATGCGAGGTCAAAATCGTCTGACCGCTTCAA
GCATCATGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAC
CCCCCAACTACCACCCCCGGCGCCTCCCCCTTTCACTCTTCGTCCAGCGT
ACCCGGGAGGGCTCCCGGGAGGAACCAATGCGCCTGCGACCCGGGTTCTT
GAAGCCTCAGGCCTCCCCCCGCACAACGTCCAACGCCAGCACCCTCCCGA
CGAATGATGACGGGCGAGGGCGCGACTACGGTCCGGCAGCAGCCGGCGGG
GAGGGCAAGAGGCACAGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5693:1077..5547-

>mRNA_Ecto-sp13_S_contig5693.16068.1 ID=mRNA_Ecto-sp13_S_contig5693.16068.1|Name=mRNA_Ecto-sp13_S_contig5693.16068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5693:1077..5547- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTGCGACCCGGGTTCTTGAAGCCTCAGGCCTCCCCCCGCACAAC
GTCCAACGCCAGCACCCTCCCGACGAATGATGACGGGCGAGGGCGCGACT
ACGGTCCGGCAGCAGCCGGCGGGGAGGGCAAGAGGCACAGCAGG
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