mRNA_Ecto-sp13_S_contig5693.16067.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5693.16067.1
Unique NamemRNA_Ecto-sp13_S_contig5693.16067.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5693.16067.1 vs. uniprot
Match: A0A6H5KTY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY4_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 3.660e-84
Identity = 197/254 (77.56%), Postives = 207/254 (81.50%), Query Frame = -1 
Query:    9 GSGGSYRRRAASTPVIRSGGDRDRPPSRWSRRRRSDGVEVGEDDTLAPSDVFVVAAVDLEFEGLGVFPGRGESFGSPLGGGGDGSGAEIDPXXXXXXXXXXXXXXXXXXXXXXXXXECVLGRPSEESWSDGLSADPLGVRRGGDFFAGDSPAVSPAPAHDGGVFQGGEEAAAAAKRRHGADRVGVKAPDASPDLKGETGDSEGEDXXXXXXXXXXXXXXXXSRRQPXEGARGEDEGRWWSPLPQQPDDEDTPPW 770
            GSGGSYRRRAASTPV RSGGDRDRPPSRWSRRRRSD VEVGE DTLAPSDVFVVAAVDLEFEGLGVFPGRGESFGSP+G            XXXXXXXXXXXXXXXXXXXXXXXX   VLGRPSEESW+ GLSADPLGVRRGGDFF G SPAVSPA A DG V  GG+EAAAAAKRRH A+RV +KAP ASPDL+G+TG+SEGE+      XXXXXXXXXX     X  A  E EGRWW PLP+QPDDEDTP W
Sbjct:  117 GSGGSYRRRAASTPVTRSGGDRDRPPSRWSRRRRSDAVEVGE-DTLAPSDVFVVAAVDLEFEGLGVFPGRGESFGSPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG-VLGRPSEESWTGGLSADPLGVRRGGDFFPGGSPAVSPAAAFDGEVVIGGKEAAAAAKRRHCANRVCLKAPTASPDLEGKTGESEGEEDGAHSGXXXXXXXXXXXXXXXXXRAGSEGEGRWWLPLPRQPDDEDTPAW 368
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5693.16067.1 vs. uniprot
Match: D7G5I5_ECTSI (Regulator of G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I5_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.690e-44
Identity = 107/142 (75.35%), Postives = 110/142 (77.46%), Query Frame = -1 
Query:    3 VLGRPSEESWSDGLSADPLGVRRGGDFFAGDSPAVSPAPAHDGGVFQGGEEAAAAAK--RRHGADRVGVKAPDASPDLKGETGDSEGEDXXXXXXXXXXXXXXXX-SRRQPXE-GARGEDEGRWWSPLPQQPDDEDTPPWWS 416
            VLGRPSE+SWSDGLSADPLGVRRGGDFF GDSPAVSPA AHDG                RRHGADRVG+KAPDASPDL+GETG SEG  XXXXXXXXXXXX     S RQP E GA GE EGRWWSPLPQQPDDEDTP WWS
Sbjct:   22 VLGRPSEKSWSDGLSADPLGVRRGGDFFPGDSPAVSPAAAHDGXXXXXXXXXXXXXXXXRRHGADRVGLKAPDASPDLEGETGKSEGXXXXXXXXXXXXXXSVRWWSLRQPSEEGAGGEGEGRWWSPLPQQPDDEDTPAWWS 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5693.16067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTY4_9PHAE3.660e-8477.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5I5_ECTSI3.690e-4475.35Regulator of G protein n=1 Tax=Ectocarpus siliculo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5693contigEcto-sp13_S_contig5693:39..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size771
Hectar predicted targeting categoryother localisation
Exons1
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.9216237-CDS-Ecto-sp13_S_contig5693:38..7941681463787.9216237-CDS-Ecto-sp13_S_contig5693:38..794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5693 39..794 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.933242-UTR-Ecto-sp13_S_contig5693:794..8081681463787.933242-UTR-Ecto-sp13_S_contig5693:794..808Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5693 795..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5693.16067.1prot_Ecto-sp13_S_contig5693.16067.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5693 39..794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5693.16067.1

>prot_Ecto-sp13_S_contig5693.16067.1 ID=prot_Ecto-sp13_S_contig5693.16067.1|Name=mRNA_Ecto-sp13_S_contig5693.16067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
PDHHGGVSSSSGCWGNGDHQRPSSSPLAPSGGCLRDHHLTLPPPPPPLGA
SSSSPSESPVSPFKSGEASGAFTPTRSAPCRRFAAAAASSPPWKTPPSWA
GAGETAGLSPAKKSPPLRTPSGSADSPSLHDSSLGLPRTHSSSSSSSSSD
APFPSPLLLSISSSSSGSISAPLPSPPPPNGDPKLSPRPGNTPRPSNSKS
TAATTKTSEGARVSSSPTSTPSLLRLRLQRDGGLSRSPPLRMTGVLAARR
R*
back to top

mRNA from alignment at Ecto-sp13_S_contig5693:39..808+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5693.16067.1 ID=mRNA_Ecto-sp13_S_contig5693.16067.1|Name=mRNA_Ecto-sp13_S_contig5693.16067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=770bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5693:39..808+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGACCACCATGGGGGGGTGTCCTCGTCATCCGGCTGCTGGGGCAACGG
CGACCACCAGCGGCCTTCGTCCTCGCCCCTCGCTCCTTCCGGCGGCTGCC
TCCGAGACCACCACCTGACGCTGCCGCCGCCGCCGCCACCGCTGGGGGCG
TCATCGTCTTCTCCTTCAGAGTCCCCCGTCTCCCCCTTCAAGTCCGGCGA
AGCGTCTGGTGCCTTCACGCCAACGCGATCGGCACCATGCCGGCGCTTCG
CCGCCGCCGCGGCCTCTTCGCCCCCTTGGAAGACTCCGCCGTCGTGGGCG
GGAGCGGGGGAAACCGCGGGGCTATCTCCCGCGAAGAAATCGCCCCCCCT
CCGCACCCCCAGCGGGTCCGCCGATAGCCCGTCGCTCCACGACTCCTCGC
TAGGCCTGCCCAGAACGCATTCTTCCTCTTCTTCTTCCTCTTCGTCGGAC
GCCCCGTTCCCGTCCCCCCTCCTTCTCTCCATCAGCTCCTCATCGTCCGG
GTCGATCTCCGCCCCACTACCATCGCCGCCGCCGCCTAACGGCGACCCGA
AGCTCTCCCCGCGGCCGGGGAACACGCCCAGGCCCTCGAACTCCAAGTCC
ACGGCCGCCACGACGAAGACATCGGAAGGCGCTAGGGTGTCGTCCTCTCC
TACCTCGACGCCGTCGCTTCTCCGCCTCCGGCTCCAGCGCGACGGCGGCC
TGTCGCGATCGCCGCCGCTGCGGATGACGGGGGTGCTGGCCGCTCGCCGC
CGGTAGCTGCCCCCGCTGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5693:39..808+

>mRNA_Ecto-sp13_S_contig5693.16067.1 ID=mRNA_Ecto-sp13_S_contig5693.16067.1|Name=mRNA_Ecto-sp13_S_contig5693.16067.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5693:39..808+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGACCACCATGGGGGGGTGTCCTCGTCATCCGGCTGCTGGGGCAACGG
CGACCACCAGCGGCCTTCGTCCTCGCCCCTCGCTCCTTCCGGCGGCTGCC
TCCGAGACCACCACCTGACGCTGCCGCCGCCGCCGCCACCGCTGGGGGCG
TCATCGTCTTCTCCTTCAGAGTCCCCCGTCTCCCCCTTCAAGTCCGGCGA
AGCGTCTGGTGCCTTCACGCCAACGCGATCGGCACCATGCCGGCGCTTCG
CCGCCGCCGCGGCCTCTTCGCCCCCTTGGAAGACTCCGCCGTCGTGGGCG
GGAGCGGGGGAAACCGCGGGGCTATCTCCCGCGAAGAAATCGCCCCCCCT
CCGCACCCCCAGCGGGTCCGCCGATAGCCCGTCGCTCCACGACTCCTCGC
TAGGCCTGCCCAGAACGCATTCTTCCTCTTCTTCTTCCTCTTCGTCGGAC
GCCCCGTTCCCGTCCCCCCTCCTTCTCTCCATCAGCTCCTCATCGTCCGG
GTCGATCTCCGCCCCACTACCATCGCCGCCGCCGCCTAACGGCGACCCGA
AGCTCTCCCCGCGGCCGGGGAACACGCCCAGGCCCTCGAACTCCAAGTCC
ACGGCCGCCACGACGAAGACATCGGAAGGCGCTAGGGTGTCGTCCTCTCC
TACCTCGACGCCGTCGCTTCTCCGCCTCCGGCTCCAGCGCGACGGCGGCC
TGTCGCGATCGCCGCCGCTGCGGATGACGGGGGTGCTGGCCGCTCGCCGC
CGGTAG
back to top