mRNA_Ecto-sp13_S_contig5692.16066.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig5692.16066.1
Unique Name	mRNA_Ecto-sp13_S_contig5692.16066.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5L5C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C8_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 8.790e-67
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 315
            +RKQAERGNAIFRYWQNGLRET+PATEFAGKGW+VDPRGKGS  DELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGC NRCTLR
Sbjct:   98 LRKQAERGNAIFRYWQNGLRETIPATEFAGKGWTVDPRGKGSVGDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCSNRCTLR 202

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.230e-64
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 315
            +RKQAERGNAIFRYWQNGLR TMPATEFAGKGWSVDPRGKGSD DELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR
Sbjct:  786 LRKQAERGNAIFRYWQNGLRATMPATEFAGKGWSVDPRGKGSDGDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 890

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.380e-64
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 315
            +RKQAERGNAIFRYWQNGLR TMPATEFAGKGWSVDPRGKGSD DELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR
Sbjct: 1805 LRKQAERGNAIFRYWQNGLRATMPATEFAGKGWSVDPRGKGSDGDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 1909

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5JME2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME2_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.190e-63
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 315
            +RKQAERGNAIFRYWQNGLR+TMP TEFAG+GWSVDPRGKGSD DELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR
Sbjct:  753 LRKQAERGNAIFRYWQNGLRKTMPLTEFAGEGWSVDPRGKGSDGDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 857

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5JR25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR25_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 7.100e-61
Identity = 95/105 (90.48%), Postives = 100/105 (95.24%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 315
            +RKQAERGNAIF+YWQ+ LRETMPATEFAG+GWSVDPRGKGSD DELTKENCVL+LSEYAYIAPDRKTV LACG NPDTALC RCRCKNKKCSLACGCRNRCTLR
Sbjct:  274 LRKQAERGNAIFQYWQHDLRETMPATEFAGQGWSVDPRGKGSDGDELTKENCVLELSEYAYIAPDRKTVKLACGFNPDTALCTRCRCKNKKCSLACGCRNRCTLR 378

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.350e-55
Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 315
            +R QAERGNAIFRYWQNGLRETMPATEFAGKGW VDPRGKGS+ DELT  NCVL LSEY+YI PDRKTVTLACGCNP+  LCNRCRCK++KCSLACGCR  CTLR
Sbjct:  316 LRMQAERGNAIFRYWQNGLRETMPATEFAGKGWGVDPRGKGSNGDELTAGNCVLRLSEYSYIGPDRKTVTLACGCNPEMYLCNRCRCKDRKCSLACGCRGLCTLR 420

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.310e-53
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 1

Query:    7 KQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTLR 315
            KQAERGNAIFRYWQNGLRE MP TEFA +GW VDPRGKGSD DEL  ENCVL LSEY+YI P+RKTVTLACGCNPDTALCNRCRCK++KCSLACG  +RCTLR
Sbjct:  415 KQAERGNAIFRYWQNGLREAMPTTEFAYEGWGVDPRGKGSDSDELIAENCVLWLSEYSYIGPNRKTVTLACGCNPDTALCNRCRCKDRKCSLACGRISRCTLR 517

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5JW66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW66_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.190e-48
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCN 249
            +RKQ ERGNAIFRYW+NGLRETMPATEFAGKGWSVD RGKGSD DELTKENCVLDLSEYA+IAPDRKT TLACGCNPDTALCN
Sbjct:  117 LRKQRERGNAIFRYWKNGLRETMPATEFAGKGWSVDSRGKGSDGDELTKENCVLDLSEYAFIAPDRKTATLACGCNPDTALCN 199

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5JT11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT11_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.040e-47
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRNRCTL 312
            +RKQAER NAIFRYWQNGLRE MPATEFAGKGWSVDP+GK +D  ELT +NCVLDLSE++YI PDRKT+TLACGCNP+T LCNRCR K++KCSL    R RCTL
Sbjct:  808 LRKQAERSNAIFRYWQNGLREAMPATEFAGKGWSVDPQGKRNDGVELTVKNCVLDLSEFSYIGPDRKTITLACGCNPETTLCNRCRWKDRKCSLXXXXRGRCTL 911

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BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Match: A0A6H5JT24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT24_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 5.070e-40
Identity = 71/84 (84.52%), Postives = 74/84 (88.10%), Query Frame = 1

Query:    1 MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKENCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNR 252
            +RKQ ERGNAIFRY QNGLRETMP TEFAGKGW V+ RGKGSD DELT ENCVL LSEY+YI PDRKTVTLA GCNPDTALCNR
Sbjct:  532 LRKQEERGNAIFRYCQNGLRETMPTTEFAGKGWGVEIRGKGSDSDELTAENCVLWLSEYSYIGPDRKTVTLAFGCNPDTALCNR 615

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig5692.16066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23


Match Name	E-value	Identity	Description
A0A6H5L5C8_9PHAE	8.790e-67	94.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KTG2_9PHAE	3.230e-64	97.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6D9_9PHAE	5.380e-64	97.14	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JME2_9PHAE	1.190e-63	95.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR25_9PHAE	7.100e-61	90.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0U7_9PHAE	1.350e-55	83.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJH5_9PHAE	3.310e-53	83.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JW66_9PHAE	1.190e-48	91.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT11_9PHAE	1.040e-47	76.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT24_9PHAE	5.070e-40	84.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig5692	contig	Ecto-sp13_S_contig5692:7580..7894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	316
Hectar predicted targeting category	other localisation
Exons	1
Cds size	315

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463787.8902404-CDS-Ecto-sp13_S_contig5692:7579..7894	1681463787.8902404-CDS-Ecto-sp13_S_contig5692:7579..7894	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig5692 7580..7894 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig5692.16066.1	prot_Ecto-sp13_S_contig5692.16066.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig5692 7580..7894 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig5692:7580..7894+
coding sequence from alignment at Ecto-sp13_S_contig5692:7580..7894+

protein sequence of mRNA_Ecto-sp13_S_contig5692.16066.1

>prot_Ecto-sp13_S_contig5692.16066.1 ID=prot_Ecto-sp13_S_contig5692.16066.1|Name=mRNA_Ecto-sp13_S_contig5692.16066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MRKQAERGNAIFRYWQNGLRETMPATEFAGKGWSVDPRGKGSDCDELTKE
NCVLDLSEYAYIAPDRKTVTLACGCNPDTALCNRCRCKNKKCSLACGCRN
RCTLR

mRNA from alignment at Ecto-sp13_S_contig5692:7580..7894+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig5692.16066.1 ID=mRNA_Ecto-sp13_S_contig5692.16066.1|Name=mRNA_Ecto-sp13_S_contig5692.16066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5692:7580..7894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAAGCAGGCAGAACGAGGTAACGCCATCTTCCGGTACTGGCAGAA
TGGCCTGAGGGAGACCATGCCGGCGACAGAGTTTGCCGGCAAAGGATGGA
GCGTCGACCCACGAGGAAAGGGGAGCGACTGCGACGAACTCACGAAGGAG
AACTGCGTGCTTGACCTGTCCGAGTATGCTTACATCGCCCCTGACCGAAA
GACAGTCACGCTAGCGTGTGGTTGCAATCCGGACACGGCCCTGTGCAACA
GGTGCAGGTGCAAGAACAAGAAGTGCTCGCTCGCTTGCGGCTGCAGAAAT
CGTTGCACCCTACGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5692:7580..7894+

>mRNA_Ecto-sp13_S_contig5692.16066.1 ID=mRNA_Ecto-sp13_S_contig5692.16066.1|Name=mRNA_Ecto-sp13_S_contig5692.16066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5692:7580..7894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAAGCAGGCAGAACGAGGTAACGCCATCTTCCGGTACTGGCAGAA
TGGCCTGAGGGAGACCATGCCGGCGACAGAGTTTGCCGGCAAAGGATGGA
GCGTCGACCCACGAGGAAAGGGGAGCGACTGCGACGAACTCACGAAGGAG
AACTGCGTGCTTGACCTGTCCGAGTATGCTTACATCGCCCCTGACCGAAA
GACAGTCACGCTAGCGTGTGGTTGCAATCCGGACACGGCCCTGTGCAACA
GGTGCAGGTGCAAGAACAAGAAGTGCTCGCTCGCTTGCGGCTGCAGAAAT
CGTTGCACCCTACGG