mRNA_Ecto-sp13_S_contig56913.16065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56913.16065.1
Unique NamemRNA_Ecto-sp13_S_contig56913.16065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JK51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK51_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.010e-19
Identity = 58/102 (56.86%), Postives = 64/102 (62.75%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNTVAAAAVA--------------AATAERI----AAATRAGTRGWMKYGVEPRRTPSTPV*HLR 253
            APVTEV DEELEEAVGATT PLPVLEELDSQ AG D+SN+ ++                   +  E +     AA  AG RGWMK GVEPRRT STPV HLR
Sbjct:  105 APVTEVCDEELEEAVGATTTPLPVLEELDSQCAGVDMSNSSSSCXXXXXXXXXXXXXSGGDGSWGEGLDDIWTAAMGAGMRGWMKPGVEPRRTLSTPVRHLR 206          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KZ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ21_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.400e-17
Identity = 49/83 (59.04%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    5 PVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNTVAAAAVAAATAERIAAATRAGTRGWMKYGVEPRRTPSTPV*HLR 253
            PVTEV DEELEEAVGA TMPLPVLE+ DS+ AGG+V N+ +                 +G  GWMK GVEPRRT STPV HLR
Sbjct:  172 PVTEVCDEELEEAVGAITMPLPVLEDPDSRCAGGNVINSNSXXXXXXXXXXXXXXXXGSGDEGWMKPGVEPRRTLSTPVRHLR 254          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JWP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.240e-16
Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNTVAAAAVAAATAERIAAATRAGTRGWMKYGVEPRRTPSTPV*HLR 253
            A VTEV DE+LE+AVGAT MPLPVLEE+DSQ A GDVSN+  +           +    +G RGWMK GVEPR T STPV H R
Sbjct:  467 ALVTEVCDEDLEKAVGATIMPLPVLEEVDSQYARGDVSNSSISXXXXXXXXXXXSGGDGSGERGWMKPGVEPRCTLSTPVRHHR 550          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KSZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.320e-14
Identity = 55/132 (41.67%), Postives = 62/132 (46.97%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT----------------------VAAAAVAAATAERIAAATRA--------------------------GTRGWMKYGVEPRRTPSTPV*HLR 253
            APVTEVYDE+LEEAVGATTMPLP LEELDSQ AGG VSN+                      V    + +     +    +A                             GWMK GVEPRRTPSTPV H+R
Sbjct:   34 APVTEVYDEKLEEAVGATTMPLPDLEELDSQCAGGGVSNSXXXXXXXXXXXXXDSGGDGSEDVGLDEIWSGAPTHLFDPGKAEGDVSXXXXXXXXXXXXXXXXXXXXXXXEGWMKPGVEPRRTPSTPVRHVR 165          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JS98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS98_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-13
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
            APVTEV DEELEEAVGATTMPLPVLEELDSQ AGGDVSN+
Sbjct:  129 APVTEVCDEELEEAVGATTMPLPVLEELDSQCAGGDVSNS 168          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JM38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM38_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.000e-11
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
            APVTEV DEELEEAVGATTM LPVLEELDSQ AGGDVSN+
Sbjct:  165 APVTEVCDEELEEAVGATTMTLPVLEELDSQYAGGDVSNS 204          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JW44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW44_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.010e-11
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
            APVT+V DEE+EEAVGAT MPLPVLEELDSQ AGGDVSN+
Sbjct:   68 APVTKVCDEEMEEAVGATIMPLPVLEELDSQCAGGDVSNS 107          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KGB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.060e-11
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
            APVTE  DEELEEAVG TTMPLPVLEELDSQ AGGDVSN+
Sbjct:   85 APVTEECDEELEEAVGPTTMPLPVLEELDSQYAGGDVSNS 124          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JLP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.230e-11
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:    2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
            APVTEV D+ELE+AVGATTMPLPVLEELD Q AGGDVSN+
Sbjct:  126 APVTEVCDDELEDAVGATTMPLPVLEELDIQCAGGDVSNS 165          
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KMT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMT6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.930e-10
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    5 PVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
            PVTEV +EEL+EAVGATTMPLPVLEELDSQ AGG VSN+
Sbjct:  128 PVTEVCNEELKEAVGATTMPLPVLEELDSQCAGGHVSNS 166          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JK51_9PHAE5.010e-1956.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ21_9PHAE3.400e-1759.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP4_9PHAE1.240e-1658.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSZ0_9PHAE4.320e-1441.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS98_9PHAE2.200e-1392.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM38_9PHAE1.000e-1190.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW44_9PHAE1.010e-1185.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGB8_9PHAE3.060e-1187.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP9_9PHAE5.230e-1185.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMT6_9PHAE6.930e-1084.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56913contigEcto-sp13_S_contig56913:2..272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.8283558-UTR-Ecto-sp13_S_contig56913:1..591681463787.8283558-UTR-Ecto-sp13_S_contig56913:1..59Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56913 2..59 +
1681463787.8623588-UTR-Ecto-sp13_S_contig56913:261..2721681463787.8623588-UTR-Ecto-sp13_S_contig56913:261..272Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56913 262..272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.8392534-CDS-Ecto-sp13_S_contig56913:59..1201681463787.8392534-CDS-Ecto-sp13_S_contig56913:59..120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56913 60..120 +
1681463787.8504195-CDS-Ecto-sp13_S_contig56913:136..2611681463787.8504195-CDS-Ecto-sp13_S_contig56913:136..261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56913 137..261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56913.16065.1prot_Ecto-sp13_S_contig56913.16065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56913 60..261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56913.16065.1

>prot_Ecto-sp13_S_contig56913.16065.1 ID=prot_Ecto-sp13_S_contig56913.16065.1|Name=mRNA_Ecto-sp13_S_contig56913.16065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MPLPVLEELDSQRAGGDVSNTVAAAAVAAATAERIAAATRAGTRGWMKYG
VEPRRTPSTPV*
back to top

mRNA from alignment at Ecto-sp13_S_contig56913:2..272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56913.16065.1 ID=mRNA_Ecto-sp13_S_contig56913.16065.1|Name=mRNA_Ecto-sp13_S_contig56913.16065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=271bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56913:2..272+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCACCGGTGACGGAGGTATATGACGAAGAGTTGGAGGAAGCGGTTGGTG CGACAACCATGCCATTGCCAGTCCTGGAGGAGCTTGATAGCCAACGTGCT GGGGGGGACGTGAGCAACAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAG CAGTAGCAGCAGCTACAGCAGAGAGGATAGCGGCGGCGACGCGAGCGGGG ACGAGGGGTTGGATGAAATATGGAGTGGAGCCCCGACGCACCCCTTCGAC CCCGGTATGACATCTTCGCGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56913:2..272+

>mRNA_Ecto-sp13_S_contig56913.16065.1 ID=mRNA_Ecto-sp13_S_contig56913.16065.1|Name=mRNA_Ecto-sp13_S_contig56913.16065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56913:2..272+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCATTGCCAGTCCTGGAGGAGCTTGATAGCCAACGTGCTGGGGGGGA
CGTGAGCAACACAGTAGCAGCAGCAGCAGTAGCAGCAGCTACAGCAGAGA
GGATAGCGGCGGCGACGCGAGCGGGGACGAGGGGTTGGATGAAATATGGA
GTGGAGCCCCGACGCACCCCTTCGACCCCGGTATGA
back to top