mRNA_Ecto-sp13_S_contig56913.16065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JK51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK51_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 5.010e-19 Identity = 58/102 (56.86%), Postives = 64/102 (62.75%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNTVAAAAVA--------------AATAERI----AAATRAGTRGWMKYGVEPRRTPSTPV*HLR 253
APVTEV DEELEEAVGATT PLPVLEELDSQ AG D+SN+ ++ + E + AA AG RGWMK GVEPRRT STPV HLR
Sbjct: 105 APVTEVCDEELEEAVGATTTPLPVLEELDSQCAGVDMSNSSSSCXXXXXXXXXXXXXSGGDGSWGEGLDDIWTAAMGAGMRGWMKPGVEPRRTLSTPVRHLR 206
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KZ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ21_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.400e-17 Identity = 49/83 (59.04%), Postives = 55/83 (66.27%), Query Frame = 2
Query: 5 PVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNTVAAAAVAAATAERIAAATRAGTRGWMKYGVEPRRTPSTPV*HLR 253
PVTEV DEELEEAVGA TMPLPVLE+ DS+ AGG+V N+ + +G GWMK GVEPRRT STPV HLR
Sbjct: 172 PVTEVCDEELEEAVGAITMPLPVLEDPDSRCAGGNVINSNSXXXXXXXXXXXXXXXXGSGDEGWMKPGVEPRRTLSTPVRHLR 254
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JWP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP4_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.240e-16 Identity = 49/84 (58.33%), Postives = 56/84 (66.67%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNTVAAAAVAAATAERIAAATRAGTRGWMKYGVEPRRTPSTPV*HLR 253
A VTEV DE+LE+AVGAT MPLPVLEE+DSQ A GDVSN+ + + +G RGWMK GVEPR T STPV H R
Sbjct: 467 ALVTEVCDEDLEKAVGATIMPLPVLEEVDSQYARGDVSNSSISXXXXXXXXXXXSGGDGSGERGWMKPGVEPRCTLSTPVRHHR 550
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KSZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ0_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 4.320e-14 Identity = 55/132 (41.67%), Postives = 62/132 (46.97%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT----------------------VAAAAVAAATAERIAAATRA--------------------------GTRGWMKYGVEPRRTPSTPV*HLR 253
APVTEVYDE+LEEAVGATTMPLP LEELDSQ AGG VSN+ V + + + +A GWMK GVEPRRTPSTPV H+R
Sbjct: 34 APVTEVYDEKLEEAVGATTMPLPDLEELDSQCAGGGVSNSXXXXXXXXXXXXXDSGGDGSEDVGLDEIWSGAPTHLFDPGKAEGDVSXXXXXXXXXXXXXXXXXXXXXXXEGWMKPGVEPRRTPSTPVRHVR 165
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JS98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS98_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.200e-13 Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
APVTEV DEELEEAVGATTMPLPVLEELDSQ AGGDVSN+
Sbjct: 129 APVTEVCDEELEEAVGATTMPLPVLEELDSQCAGGDVSNS 168
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JM38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM38_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.000e-11 Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
APVTEV DEELEEAVGATTM LPVLEELDSQ AGGDVSN+
Sbjct: 165 APVTEVCDEELEEAVGATTMTLPVLEELDSQYAGGDVSNS 204
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JW44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW44_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.010e-11 Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
APVT+V DEE+EEAVGAT MPLPVLEELDSQ AGGDVSN+
Sbjct: 68 APVTKVCDEEMEEAVGATIMPLPVLEELDSQCAGGDVSNS 107
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KGB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB8_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 3.060e-11 Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
APVTE DEELEEAVG TTMPLPVLEELDSQ AGGDVSN+
Sbjct: 85 APVTEECDEELEEAVGPTTMPLPVLEELDSQYAGGDVSNS 124
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5JLP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP9_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 5.230e-11 Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query: 2 APVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
APVTEV D+ELE+AVGATTMPLPVLEELD Q AGGDVSN+
Sbjct: 126 APVTEVCDDELEDAVGATTMPLPVLEELDIQCAGGDVSNS 165
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Match: A0A6H5KMT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMT6_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 6.930e-10 Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query: 5 PVTEVYDEELEEAVGATTMPLPVLEELDSQRAGGDVSNT 121
PVTEV +EEL+EAVGATTMPLPVLEELDSQ AGG VSN+
Sbjct: 128 PVTEVCNEELKEAVGATTMPLPVLEELDSQCAGGHVSNS 166 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56913.16065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig56913.16065.1 >prot_Ecto-sp13_S_contig56913.16065.1 ID=prot_Ecto-sp13_S_contig56913.16065.1|Name=mRNA_Ecto-sp13_S_contig56913.16065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp MPLPVLEELDSQRAGGDVSNTVAAAAVAAATAERIAAATRAGTRGWMKYGback to top mRNA from alignment at Ecto-sp13_S_contig56913:2..272+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig56913.16065.1 ID=mRNA_Ecto-sp13_S_contig56913.16065.1|Name=mRNA_Ecto-sp13_S_contig56913.16065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=271bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56913:2..272+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56913:2..272+ >mRNA_Ecto-sp13_S_contig56913.16065.1 ID=mRNA_Ecto-sp13_S_contig56913.16065.1|Name=mRNA_Ecto-sp13_S_contig56913.16065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56913:2..272+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |