mRNA_Ecto-sp13_S_contig5690.16064.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5690.16064.1
Unique NamemRNA_Ecto-sp13_S_contig5690.16064.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5690.16064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5690contigEcto-sp13_S_contig5690:5593..6804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size407
Hectar predicted targeting categorymitochondrion
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.7768512-UTR-Ecto-sp13_S_contig5690:5592..56061681463787.7768512-UTR-Ecto-sp13_S_contig5690:5592..5606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5690 5593..5606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.7879257-CDS-Ecto-sp13_S_contig5690:5606..56691681463787.7879257-CDS-Ecto-sp13_S_contig5690:5606..5669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5690 5607..5669 +
1681463787.7985551-CDS-Ecto-sp13_S_contig5690:6474..68041681463787.7985551-CDS-Ecto-sp13_S_contig5690:6474..6804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5690 6475..6804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5690.16064.1prot_Ecto-sp13_S_contig5690.16064.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5690 5607..6804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5690.16064.1

>prot_Ecto-sp13_S_contig5690.16064.1 ID=prot_Ecto-sp13_S_contig5690.16064.1|Name=mRNA_Ecto-sp13_S_contig5690.16064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MAAAVVKPFVVARAASASLPAPGWTSATTRLGPGTCSYVFVSQLFLSRRP
MRLCSSWRSSRSCGRGGRQAGKGRGCKIQVVGCLFISSDADEGRCIRIRV
GSITCRRATVLAEVFDWDSTNGISFNESRN*
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mRNA from alignment at Ecto-sp13_S_contig5690:5593..6804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5690.16064.1 ID=mRNA_Ecto-sp13_S_contig5690.16064.1|Name=mRNA_Ecto-sp13_S_contig5690.16064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5690:5593..6804+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCCCCGCAGCCATGGCGGCTGCCGTCGTGAAACCTTTCGTGGTGGCT
CGAGCAGCTTCCGCATCGTTACCGGCCCATTCGCGGATGTGCGTTGTTGG
TGTTTTGAATCAGCGAACCGAAAACAGACAGACGTAGTTACCACGTAGAG
TAGGACGGGATAGTTACGAGTGTAGCTCTTGCACGTAGCAAGTGGCCGCG
TGGGTGGTCGAGCTAAACTCTGTTAGATAAAGGCTTACCCATTAGACTAC
TCAGTCAGCCCTCTATCTAACAAAAGATACACTCTCGGCTCGTAGAATCC
CGGGCTGCGTTAAGAAATCTCCGGGGACGGACCCCTTGCCAGGCGCTGCC
GAGTGAAGAACTATGGTGCTTCCCGTAGAGTGATCAGCCCGGGATTCGAC
CCTGTGCGTGTATCCTTTGTTGCCAAATGCTAAACCATTGGTCTAGTCAA
CGTTGACTGGCGCTGACTGCGTAGTCTAATGGGTAAGCCTTTATCTAACA
AAATCTTCCTTCGTCTGCCAATTGGATATCATTCCTCCCTTCCTCTGGCG
CATGTCGTCGTACATCACTGCGGAGATCCTATGAGAAACGTATGGCTACC
GCACAGAAGGCCGCGTGTCTGTCCTTCTTCCGCACCAAGTGATCACTCAC
TCCGTACTCAATGCATCGAGACAGACGCTCTTCACTCCAAACGGAGGGCC
GTTCACGGTGCACGATAAAATACTGCACAACTTGTACATGGTTGGTTCTG
GTCAACCGCTCTTCTTGTTGTTGAAGTCTTAATAATAGAGCACAGATAGA
CCGCCGGAGAGCAACGAACGATAGAACTGACACAAAACTGAAGATCGTTT
TGAACGTCATATCGTGTGGATGCCGAACTCTACCTGGGTGGACGAGCGCG
ACGACAAGGTTGGGACCAGGCACGTGCTCGTACGTCTTCGTGAGCCAGCT
GTTCTTGTCAAGAAGGCCCATGCGGCTTTGCTCTTCCTGGAGGAGTTCTC
GATCCTGCGGCAGGGGTGGTAGACAGGCAGGAAAAGGACGAGGTTGTAAG
ATACAAGTAGTAGGTTGTCTGTTCATTTCGTCCGATGCCGATGAGGGCCG
TTGTATCAGAATACGGGTCGGGTCGATCACGTGCAGGCGTGCGACGGTAT
TGGCGGAAGTATTTGATTGGGACTCGACAAATGGAATAAGCTTCAATGAA
AGTCGAAATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5690:5593..6804+

>mRNA_Ecto-sp13_S_contig5690.16064.1 ID=mRNA_Ecto-sp13_S_contig5690.16064.1|Name=mRNA_Ecto-sp13_S_contig5690.16064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5690:5593..6804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCTGCCGTCGTGAAACCTTTCGTGGTGGCTCGAGCAGCTTCCGC
ATCGTTACCGGCCCCTGGGTGGACGAGCGCGACGACAAGGTTGGGACCAG
GCACGTGCTCGTACGTCTTCGTGAGCCAGCTGTTCTTGTCAAGAAGGCCC
ATGCGGCTTTGCTCTTCCTGGAGGAGTTCTCGATCCTGCGGCAGGGGTGG
TAGACAGGCAGGAAAAGGACGAGGTTGTAAGATACAAGTAGTAGGTTGTC
TGTTCATTTCGTCCGATGCCGATGAGGGCCGTTGTATCAGAATACGGGTC
GGGTCGATCACGTGCAGGCGTGCGACGGTATTGGCGGAAGTATTTGATTG
GGACTCGACAAATGGAATAAGCTTCAATGAAAGTCGAAATTGA
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