mRNA_Ecto-sp13_S_contig5686.16055.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: D8LBQ4_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBQ4_ECTSI) HSP 1 Score: 249 bits (636), Expect = 3.710e-76 Identity = 129/174 (74.14%), Postives = 134/174 (77.01%), Query Frame = 1
Query: 1 SGGSHTESGGXXXXXXXXXXXGVVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYRETPYAPRLRPPTGGGGAAGTXXXXXXXXXXXXXXXXXXXGLSG--TKQRVDYPYGKVGRY 516
SGGSH SG GVVESSRK+RRRPLEFVVGAGQV+KGIDRSIRQMLHGERAR+FVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPY+ETPYAPRLRPPTGG G AG G+ G TKQ VDYPYGKVGRY
Sbjct: 423 SGGSHAVSGYGSSGNDGGGDAGVVESSRKHRRRPLEFVVGAGQVVKGIDRSIRQMLHGERARVFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYKETPYAPRLRPPTGGDGTAGAGGVGTAHGST---------GVDGGPTKQPVDYPYGKVGRY 587
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A836CB63_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB63_9STRA) HSP 1 Score: 133 bits (334), Expect = 8.680e-33 Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query: 67 VVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYRETPY 354
VVES+RK RR EFV+GAG VI+G+DR + +M GERARI V+A Y YG++G PP IPP AALVFDVNL+ FWPRPRW+KPL+Q PY ETPY
Sbjct: 351 VVESTRKTRRCAFEFVLGAGAVIRGLDRGVARMAFGERARITVSAEYAYGERGFPPIIPPGAALVFDVNLIRFWPRPRWRKPLIQATG-PYTETPY 445
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A7S3US58_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US58_HETAK) HSP 1 Score: 100 bits (248), Expect = 7.030e-22 Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1
Query: 70 VESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYRETPYAP 360
++S++ R+RP EFV+G GQVIKG +R++ M GER++ ++A Y YG++G P IPP + LVFD LL FW RP W KPL+Q E PY P
Sbjct: 153 IDSTKHKRKRPFEFVIGEGQVIKGFERAVAGMSLGERSKFTISAEYAYGEEGMIPNIPPGSKLVFDATLLAFWARPLWLKPLIQQPG--LSEKPYEP 247
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A0V0QJW8_PSEPJ (Peptidylprolyl isomerase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QJW8_PSEPJ) HSP 1 Score: 78.2 bits (191), Expect = 4.260e-15 Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
S ++R +P +F +GAGQVIKG D + QM GERA I + YG++G+P IPP+A LVFDV LL F
Sbjct: 40 SSRDRNQPFQFTLGAGQVIKGWDEGVAQMSQGERATITCPYTHAYGEQGYPGVIPPKATLVFDVELLSF 108
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: B8BR35_THAPS (Peptidylprolyl isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR35_THAPS) HSP 1 Score: 83.2 bits (204), Expect = 7.360e-15 Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
S ++R +P +F +G GQVIKG D M GE AR+ + + YGYGD+GHPPTIP +A L+FDV LL F
Sbjct: 53 SSRDRGKPFKFTIGTGQVIKGWDEGFASMKVGEVARLVIKSEYGYGDRGHPPTIPAKATLIFDVELLGF 121
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A3M6VB60_9STRA (Peptidylprolyl isomerase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB60_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 7.740e-15 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
S +NR P +F +GAG+VI+G D + M G+ A++ ++ Y YG++GHPP IPP+A L+F+V LL F
Sbjct: 37 SNQNREHPFQFKLGAGEVIRGWDEGVAMMSKGQIAKLTLSHEYAYGERGHPPVIPPKATLIFEVELLSF 105
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: M4BZY2_HYAAE (Peptidylprolyl isomerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZY2_HYAAE) HSP 1 Score: 76.6 bits (187), Expect = 1.600e-14 Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 64 GVVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
GV S ++R RP +F +GAGQVI+G D + +M G+ A++ ++ Y YG+ G+PP IPP+A L+F+V LL F
Sbjct: 34 GVKFDSSRDRGRPFQFKLGAGQVIRGWDEGVAKMSTGQIAKLTLSHEYAYGESGYPPVIPPKATLIFEVELLSF 107
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A5A8E9C9_CAFRO (Peptidylprolyl isomerase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9C9_CAFRO) HSP 1 Score: 77.0 bits (188), Expect = 2.570e-14 Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 70 VESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
++SSR +R+ PLEF VG GQVI G+D ++++M G+RA++ + A YG +G+PP IPP AALV DV L+ F
Sbjct: 69 IDSSR-DRKVPLEFRVGLGQVIPGLDVAMKRMSRGQRAKLTIPAAMAYGARGYPPIIPPGAALVMDVELISF 139
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: H3G8A5_PHYRM (Peptidylprolyl isomerase n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3G8A5_PHYRM) HSP 1 Score: 75.9 bits (185), Expect = 3.150e-14 Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
S ++R RP +F +GAGQVI+G D + +M G+ A++ + Y YG++G+PP IPPRA L+F+V LL F
Sbjct: 39 SSRDRGRPFQFELGAGQVIRGWDEGVAKMSKGQVAKLTLPHDYAYGERGYPPVIPPRATLIFEVELLSF 107
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A0B7FP28_THACB (Peptidylprolyl isomerase n=2 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FP28_THACB) HSP 1 Score: 78.2 bits (191), Expect = 4.490e-14 Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 64 GVVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLD 282
G S + R P EF +GAGQVI+G D+ ++ M GER +I + Y YG +G+PPTIPP A LVFDV LLD
Sbjct: 133 GKTFDSSRERGAPFEFKLGAGQVIRGWDQGLQGMGIGERRKITLPPAYAYGPRGYPPTIPPNATLVFDVELLD 205 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5686.16055.1 >prot_Ecto-sp13_S_contig5686.16055.1 ID=prot_Ecto-sp13_S_contig5686.16055.1|Name=mRNA_Ecto-sp13_S_contig5686.16055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp SGGSHTESGGSSSGNDGGGDAGVVESSRKNRRRPLEFVVGAGQVIKGIDRback to top mRNA from alignment at Ecto-sp13_S_contig5686:5901..6580+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5686.16055.1 ID=mRNA_Ecto-sp13_S_contig5686.16055.1|Name=mRNA_Ecto-sp13_S_contig5686.16055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5686:5901..6580+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5686:5901..6580+ >mRNA_Ecto-sp13_S_contig5686.16055.1 ID=mRNA_Ecto-sp13_S_contig5686.16055.1|Name=mRNA_Ecto-sp13_S_contig5686.16055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5686:5901..6580+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |