mRNA_Ecto-sp13_S_contig5686.16055.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5686.16055.1
Unique NamemRNA_Ecto-sp13_S_contig5686.16055.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: D8LBQ4_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBQ4_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 3.710e-76
Identity = 129/174 (74.14%), Postives = 134/174 (77.01%), Query Frame = 1
Query:    1 SGGSHTESGGXXXXXXXXXXXGVVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYRETPYAPRLRPPTGGGGAAGTXXXXXXXXXXXXXXXXXXXGLSG--TKQRVDYPYGKVGRY 516
            SGGSH  SG            GVVESSRK+RRRPLEFVVGAGQV+KGIDRSIRQMLHGERAR+FVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPY+ETPYAPRLRPPTGG G AG                    G+ G  TKQ VDYPYGKVGRY
Sbjct:  423 SGGSHAVSGYGSSGNDGGGDAGVVESSRKHRRRPLEFVVGAGQVVKGIDRSIRQMLHGERARVFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYKETPYAPRLRPPTGGDGTAGAGGVGTAHGST---------GVDGGPTKQPVDYPYGKVGRY 587          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A836CB63_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB63_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.680e-33
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query:   67 VVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYRETPY 354
            VVES+RK RR   EFV+GAG VI+G+DR + +M  GERARI V+A Y YG++G PP IPP AALVFDVNL+ FWPRPRW+KPL+Q    PY ETPY
Sbjct:  351 VVESTRKTRRCAFEFVLGAGAVIRGLDRGVARMAFGERARITVSAEYAYGERGFPPIIPPGAALVFDVNLIRFWPRPRWRKPLIQATG-PYTETPY 445          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A7S3US58_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US58_HETAK)

HSP 1 Score: 100 bits (248), Expect = 7.030e-22
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   70 VESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPRWQKPLVQVLSEPYRETPYAP 360
            ++S++  R+RP EFV+G GQVIKG +R++  M  GER++  ++A Y YG++G  P IPP + LVFD  LL FW RP W KPL+Q       E PY P
Sbjct:  153 IDSTKHKRKRPFEFVIGEGQVIKGFERAVAGMSLGERSKFTISAEYAYGEEGMIPNIPPGSKLVFDATLLAFWARPLWLKPLIQQPG--LSEKPYEP 247          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A0V0QJW8_PSEPJ (Peptidylprolyl isomerase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QJW8_PSEPJ)

HSP 1 Score: 78.2 bits (191), Expect = 4.260e-15
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
            S ++R +P +F +GAGQVIKG D  + QM  GERA I     + YG++G+P  IPP+A LVFDV LL F
Sbjct:   40 SSRDRNQPFQFTLGAGQVIKGWDEGVAQMSQGERATITCPYTHAYGEQGYPGVIPPKATLVFDVELLSF 108          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: B8BR35_THAPS (Peptidylprolyl isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR35_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 7.360e-15
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
            S ++R +P +F +G GQVIKG D     M  GE AR+ + + YGYGD+GHPPTIP +A L+FDV LL F
Sbjct:   53 SSRDRGKPFKFTIGTGQVIKGWDEGFASMKVGEVARLVIKSEYGYGDRGHPPTIPAKATLIFDVELLGF 121          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A3M6VB60_9STRA (Peptidylprolyl isomerase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB60_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.740e-15
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
            S +NR  P +F +GAG+VI+G D  +  M  G+ A++ ++  Y YG++GHPP IPP+A L+F+V LL F
Sbjct:   37 SNQNREHPFQFKLGAGEVIRGWDEGVAMMSKGQIAKLTLSHEYAYGERGHPPVIPPKATLIFEVELLSF 105          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: M4BZY2_HYAAE (Peptidylprolyl isomerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZY2_HYAAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-14
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   64 GVVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
            GV   S ++R RP +F +GAGQVI+G D  + +M  G+ A++ ++  Y YG+ G+PP IPP+A L+F+V LL F
Sbjct:   34 GVKFDSSRDRGRPFQFKLGAGQVIRGWDEGVAKMSTGQIAKLTLSHEYAYGESGYPPVIPPKATLIFEVELLSF 107          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A5A8E9C9_CAFRO (Peptidylprolyl isomerase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E9C9_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 2.570e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   70 VESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
            ++SSR +R+ PLEF VG GQVI G+D ++++M  G+RA++ + A   YG +G+PP IPP AALV DV L+ F
Sbjct:   69 IDSSR-DRKVPLEFRVGLGQVIPGLDVAMKRMSRGQRAKLTIPAAMAYGARGYPPIIPPGAALVMDVELISF 139          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: H3G8A5_PHYRM (Peptidylprolyl isomerase n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3G8A5_PHYRM)

HSP 1 Score: 75.9 bits (185), Expect = 3.150e-14
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   79 SRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDF 285
            S ++R RP +F +GAGQVI+G D  + +M  G+ A++ +   Y YG++G+PP IPPRA L+F+V LL F
Sbjct:   39 SSRDRGRPFQFELGAGQVIRGWDEGVAKMSKGQVAKLTLPHDYAYGERGYPPVIPPRATLIFEVELLSF 107          
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Match: A0A0B7FP28_THACB (Peptidylprolyl isomerase n=2 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FP28_THACB)

HSP 1 Score: 78.2 bits (191), Expect = 4.490e-14
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   64 GVVESSRKNRRRPLEFVVGAGQVIKGIDRSIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLD 282
            G    S + R  P EF +GAGQVI+G D+ ++ M  GER +I +   Y YG +G+PPTIPP A LVFDV LLD
Sbjct:  133 GKTFDSSRERGAPFEFKLGAGQVIRGWDQGLQGMGIGERRKITLPPAYAYGPRGYPPTIPPNATLVFDVELLD 205          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5686.16055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBQ4_ECTSI3.710e-7674.14Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CB63_9STRA8.680e-3365.63Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S3US58_HETAK7.030e-2248.45Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A0V0QJW8_PSEPJ4.260e-1552.17Peptidylprolyl isomerase n=1 Tax=Pseudocohnilembus... [more]
B8BR35_THAPS7.360e-1553.62Peptidylprolyl isomerase n=1 Tax=Thalassiosira pse... [more]
A0A3M6VB60_9STRA7.740e-1546.38Peptidylprolyl isomerase n=1 Tax=Peronospora effus... [more]
M4BZY2_HYAAE1.600e-1445.95Peptidylprolyl isomerase n=1 Tax=Hyaloperonospora ... [more]
A0A5A8E9C9_CAFRO2.570e-1451.39Peptidylprolyl isomerase n=2 Tax=Cafeteria roenber... [more]
H3G8A5_PHYRM3.150e-1447.83Peptidylprolyl isomerase n=13 Tax=Peronosporaceae ... [more]
A0A0B7FP28_THACB4.490e-1452.05Peptidylprolyl isomerase n=2 Tax=Thanatephorus cuc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5686contigEcto-sp13_S_contig5686:5901..6580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score251.1
Seed ortholog evalue3.7e-64
Seed eggNOG ortholog2880.D8LBQ4
Model size682
KEGG koko:K09572
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-27_003120.1
EC5.2.1.8
Cds size519
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.1384041-CDS-Ecto-sp13_S_contig5686:5900..64191681463787.1384041-CDS-Ecto-sp13_S_contig5686:5900..6419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5686 5901..6419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.1501918-UTR-Ecto-sp13_S_contig5686:6419..65801681463787.1501918-UTR-Ecto-sp13_S_contig5686:6419..6580Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5686 6420..6580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5686.16055.1prot_Ecto-sp13_S_contig5686.16055.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5686 5901..6419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5686.16055.1

>prot_Ecto-sp13_S_contig5686.16055.1 ID=prot_Ecto-sp13_S_contig5686.16055.1|Name=mRNA_Ecto-sp13_S_contig5686.16055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
SGGSHTESGGSSSGNDGGGDAGVVESSRKNRRRPLEFVVGAGQVIKGIDR
SIRQMLHGERARIFVTALYGYGDKGHPPTIPPRAALVFDVNLLDFWPRPR
WQKPLVQVLSEPYRETPYAPRLRPPTGGGGAAGTGGAGTADGSTGVDGGP
AVDGLSGTKQRVDYPYGKVGRY*
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mRNA from alignment at Ecto-sp13_S_contig5686:5901..6580+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5686.16055.1 ID=mRNA_Ecto-sp13_S_contig5686.16055.1|Name=mRNA_Ecto-sp13_S_contig5686.16055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5686:5901..6580+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGCGGCTCCCACACAGAAAGCGGTGGTAGCAGCAGCGGAAACGATGG CGGTGGCGACGCCGGTGTTGTAGAGAGTTCTCGTAAGAACAGGCGACGGC CGCTCGAGTTTGTCGTCGGGGCGGGGCAGGTGATAAAGGGAATCGACCGC TCGATCCGGCAGATGCTGCACGGGGAGCGGGCGAGGATTTTCGTGACGGC CCTGTACGGCTACGGAGACAAGGGGCATCCGCCGACGATCCCACCACGGG CAGCCCTCGTGTTCGACGTGAACTTGTTGGACTTCTGGCCCCGGCCGAGG TGGCAGAAGCCGCTTGTGCAGGTGCTGTCCGAGCCGTACAGGGAAACGCC GTACGCACCGCGCTTGCGCCCACCGACAGGGGGTGGTGGTGCTGCAGGTA CCGGAGGGGCGGGCACCGCAGATGGTAGCACCGGTGTCGATGGTGGTCCC GCCGTGGATGGATTGTCAGGGACCAAGCAACGTGTAGACTATCCTTACGG CAAGGTTGGGAGATACTAAATAGGTATCGTCGTGTTCTCGACGTGCGTTT GTAGAAATGATGGCCCGTGACTTAGTAACGGCGGCGTTGATTGCCATGCC GTCCTGTGTACATGTGTGTTTACGAAGGACCCCCCGTATTCCATTTTCTC CCGCCTTTCCTGTATAAATAAGTTTGCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5686:5901..6580+

>mRNA_Ecto-sp13_S_contig5686.16055.1 ID=mRNA_Ecto-sp13_S_contig5686.16055.1|Name=mRNA_Ecto-sp13_S_contig5686.16055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5686:5901..6580+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGCGGCTCCCACACAGAAAGCGGTGGTAGCAGCAGCGGAAACGATGG
CGGTGGCGACGCCGGTGTTGTAGAGAGTTCTCGTAAGAACAGGCGACGGC
CGCTCGAGTTTGTCGTCGGGGCGGGGCAGGTGATAAAGGGAATCGACCGC
TCGATCCGGCAGATGCTGCACGGGGAGCGGGCGAGGATTTTCGTGACGGC
CCTGTACGGCTACGGAGACAAGGGGCATCCGCCGACGATCCCACCACGGG
CAGCCCTCGTGTTCGACGTGAACTTGTTGGACTTCTGGCCCCGGCCGAGG
TGGCAGAAGCCGCTTGTGCAGGTGCTGTCCGAGCCGTACAGGGAAACGCC
GTACGCACCGCGCTTGCGCCCACCGACAGGGGGTGGTGGTGCTGCAGGTA
CCGGAGGGGCGGGCACCGCAGATGGTAGCACCGGTGTCGATGGTGGTCCC
GCCGTGGATGGATTGTCAGGGACCAAGCAACGTGTAGACTATCCTTACGG
CAAGGTTGGGAGATACTAA
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