mRNA_Ecto-sp13_S_contig56858.16054.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56858.16054.1
Unique NamemRNA_Ecto-sp13_S_contig56858.16054.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56858.16054.1 vs. uniprot
Match: D7FZE6_ECTSI (Eukaryotic translation initiation factor 3 subunit L n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZE6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.030e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 WPEAEVIANQCSNDELFLCFYRELRNRHMFATTNV 105
            WPEAEVIANQCSNDELFLCFYRELRNRHMFATTNV
Sbjct:   88 WPEAEVIANQCSNDELFLCFYRELRNRHMFATTNV 122
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BLAST of mRNA_Ecto-sp13_S_contig56858.16054.1 vs. uniprot
Match: A0A835YSE4_9STRA (Eukaryotic translation initiation factor 3 subunit L n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE4_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 6.710e-5
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:    1 WPEAEVIANQCSNDELFLCFYRELRNRHM 87
            WP A+VI+NQC  D++FL FY E+R RHM
Sbjct:   58 WPAADVISNQCGEDQIFLQFYSEMRLRHM 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56858.16054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZE6_ECTSI1.030e-16100.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A835YSE4_9STRA6.710e-562.07Eukaryotic translation initiation factor 3 subunit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56858contigEcto-sp13_S_contig56858:30..158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score80.1
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog2880.D7FZE6
Preferred nameEIF3L
Model size129
KEGG koko:K15029
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016032,GO:0019080,GO:0019081,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0051704,GO:0070013,GO:0071704,GO:0075525,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG3677@1,KOG3677@2759
Cds size129
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.1080182-CDS-Ecto-sp13_S_contig56858:29..1581681463787.1080182-CDS-Ecto-sp13_S_contig56858:29..158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56858 30..158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56858.16054.1prot_Ecto-sp13_S_contig56858.16054.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56858 30..158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56858.16054.1

>prot_Ecto-sp13_S_contig56858.16054.1 ID=prot_Ecto-sp13_S_contig56858.16054.1|Name=mRNA_Ecto-sp13_S_contig56858.16054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
WPEAEVIANQCSNDELFLCFYRELRNRHMFATTNVSPNPPAPC
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mRNA from alignment at Ecto-sp13_S_contig56858:30..158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56858.16054.1 ID=mRNA_Ecto-sp13_S_contig56858.16054.1|Name=mRNA_Ecto-sp13_S_contig56858.16054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56858:30..158+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCTGAGGCAGAGGTGATCGCGAACCAGTGCTCCAACGACGAGCTGTT
CCTGTGCTTCTACAGAGAACTGCGCAACAGGCACATGTTTGCCACCACTA
ATGTGAGTCCCAATCCTCCCGCCCCGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56858:30..158+

>mRNA_Ecto-sp13_S_contig56858.16054.1 ID=mRNA_Ecto-sp13_S_contig56858.16054.1|Name=mRNA_Ecto-sp13_S_contig56858.16054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56858:30..158+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCTGAGGCAGAGGTGATCGCGAACCAGTGCTCCAACGACGAGCTGTT
CCTGTGCTTCTACAGAGAACTGCGCAACAGGCACATGTTTGCCACCACTA
ATGTGAGTCCCAATCCTCCCGCCCCGTGC
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