mRNA_Ecto-sp13_S_contig568.16043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig568.16043.1
Unique NamemRNA_Ecto-sp13_S_contig568.16043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A6H5K2E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E0_9PHAE)

HSP 1 Score: 492 bits (1266), Expect = 3.950e-168
Identity = 253/267 (94.76%), Postives = 257/267 (96.25%), Query Frame = 1 
Query:  556 AQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSAIPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNVFHVLGHGTGAEAALELGRSSGKASPRPPGPEPEAILSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMASRSSDGFARGLAAMKQDRRSKGSAAAAAAGPLACPVLITYGKRDVIGDKTVAGIKQGLSGGDAPVECRRFEESGHLAHLDEREEYVSLVKNYVTFIDDAWSGNSGDTKK 1356
            AQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSA+PSVDAAADSPNLLGTASLVAQTRAVVD+FKVN FHVLGHGTGAEAALELGRS GKASPRPPGPEPEAILSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMA RSSDGFA G+AAM QDRRSKGSAAAAA GPLACPVLITYGKRDVIGDKTV GI QGLSGGDAPVE RRFEESGHLAHLDEREEYVSLVKNYVTFIDDAWSG SG+TKK
Sbjct:    3 AQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSALPSVDAAADSPNLLGTASLVAQTRAVVDFFKVNAFHVLGHGTGAEAALELGRSLGKASPRPPGPEPEAILSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMAGRSSDGFAGGVAAMNQDRRSKGSAAAAA-GPLACPVLITYGKRDVIGDKTVTGITQGLSGGDAPVESRRFEESGHLAHLDEREEYVSLVKNYVTFIDDAWSGKSGETKK 268
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BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: D8LLW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLW3_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 3.240e-147
Identity = 224/232 (96.55%), Postives = 226/232 (97.41%), Query Frame = 1 
Query:  460 MDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSAIPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNVFHVLGHGTGAEAALELGRSSGKASPRPPGPEPEAILSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMASRSSDGFARGLAAMKQDRRSKGSAAAAAAGPLACPVLITYGK 1155
            MDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSA+PSVDAAADSPNLLGTASLVAQTRAVVDYFKVN FHVLGHGT AEAALELGRS GKASPRPPGPEPEA+LSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMA RSSDGFA GLAAMKQDRRSKGSAAAA AGPLACPVLITYGK
Sbjct:    1 MDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSALPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNAFHVLGHGTSAEAALELGRSLGKASPRPPGPEPEAVLSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMAGRSSDGFAGGLAAMKQDRRSKGSAAAAGAGPLACPVLITYGK 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A6H5JXA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA0_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 1.810e-90
Identity = 145/165 (87.88%), Postives = 155/165 (93.94%), Query Frame = 1 
Query:   61 MGRPPQLLQVVAMICLSCLPSVAFTPGAIDMVFLRHRQQRDDCCSRSTARGDHEQQGGSISTSLANKRSCRQDQHSRNTELRAAGGGTSDRGKFLQRVAAGTFAAGVATTAAVTGPDEAGAFCGEPYPYWAYFMDFDEVFIPFKFEGYSGKLFARTVGNGKDQKK 555
            MGRPPQL+Q+VA++CL CL SVAFTPGAI+ VFLR+RQQRDDCCSRSTAR +HEQQGGSISTSLANKRS RQDQHSRNTELRAAGGG SDR +FLQRVAA TFAAG+ATTA VTGP EAGAFCGEPYPYWAYFMDFDEVF+PFKFEGYSGKLFARTVGNGKDQKK
Sbjct:    1 MGRPPQLIQLVAVVCLCCLRSVAFTPGAINNVFLRNRQQRDDCCSRSTARRNHEQQGGSISTSLANKRSYRQDQHSRNTELRAAGGGASDRREFLQRVAARTFAAGLATTAVVTGPGEAGAFCGEPYPYWAYFMDFDEVFVPFKFEGYSGKLFARTVGNGKDQKK 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A7S3XPS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPS5_HETAK)

HSP 1 Score: 173 bits (438), Expect = 4.280e-44
Identity = 108/321 (33.64%), Postives = 172/321 (53.58%), Query Frame = 1 
Query:  415 AGAFCGEPYPYWAYFMDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSAIPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNVFHVLGHGTGAEAALELGRSSGKASPRPPGPE-PEAILSVILASPVLGENEL--SPDFLEALRTPY---------IKDGN----EPPLCLETAMASRSSDGFARGLAAMKQDRRSKGSAAAAAAGPLACPVLITYGKRDVIGDKTVAGIKQGLSGGDAP---VECRRFEESGHLAHLDEREEYVSLVKNYVTFID 1320
            AGA+CG+PYP WAY ++F++  IP++      +L+ R VG+   +K+ +  P++++PGGPGL HDYLETLE  +   R V+LFDP+GTG S   P   A+A SP      SL+ Q   V+    +  +H+  HG  +  ALE  +        P  P+  + +LSV   SP     +L  + D LEA   P+         I  GN    + P+C+E +  +  ++ +   + A+K      G   A+    + CP+++TYG+RD+I + +V   K   +    P   V    +E SGHLAH+DE+E Y+ +V+N++  +D
Sbjct:   74 AGAWCGDPYPAWAYTLNFNDGVIPYQ----GSQLYIRVVGDEYYEKRVKRKPLIVLPGGPGLSHDYLETLEAVSQTQRRVVLFDPLGTGQSGPRPPAAASAGSPR-----SLLDQLNRVISELGLKEYHLFAHGYSSVVALEKLKQLSTQEDNPGKPKGKQTVLSVTFESPFAKGEDLIEAADALEAKGYPWKTSPNIQSKILGGNPDLKKTPVCMEDSYKTSDAEAYGPEIRALK------GWNCASYVDYVKCPMIVTYGRRDLISETSVTEFKDTFTAPAKPGNEVYLSVYENSGHLAHIDEKETYIQMVQNFLDKVD 379
[Close]
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A835YII1_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YII1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.820e-27
Identity = 86/229 (37.55%), Postives = 122/229 (53.28%), Query Frame = 1 
Query:  343 LQRVAAGTFAAGVATTAAVTGPDEAGAFCGEPYPYWAYFMDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSAIPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNVFHVLGHGTGAEAALELGRSSGKASPRPPGPEPEAILSVILASPVLGENELSPD-FLEALRTPYIKDGNEPPLCLETAM 1026
            L + AA    +G    A+ T    A AFCGEPYP WAY +DF+E  +PF+ +G+ G+LF++              P+V++P   GL H YLETLE AA +DR V+L+DP+GTG SSA+P+   AA +        L  Q +AV+ + ++  +H+LGHGTGA                         LSV LASP+L     +PD +  AL + +  DG   P+CL  A+
Sbjct:   15 LLQAAAAAVISGTLAAASTT----AEAFCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFSKRF------------PLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPA--------LERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXXXXX-------XALSVTLASPLLRG---TPDGYAAALLSAF--DGRAVPVCLAEAV 206
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BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A4D9CNP1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNP1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.520e-22
Identity = 103/341 (30.21%), Postives = 158/341 (46.33%), Query Frame = 1 
Query:  364 TFAAGVATTAAVTG--PDEAGAFCGEPYPYWAYFMDFDEVFIPFKFEGY--SGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSS-AIPSVDAAADSP---------NLLGTASLVAQTRAVVDYFKVNVFHVLGHGTGAEAALE--LGRSSGKASPRPPGPEPEAIL----SVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMASRSSDGFARGLAAMKQ----DRRSKGSAAAAAAGPLACPVLITYGK----RDVIGDKTVAGIKQGLSGG--DAPVECRRFEESGHLAHLDEREEYVSLV 1296
            T A  V   A+V G  P +A A+CG+PYP WAY + F++  IP    G   S  LF R VG+ + +K     P++++PGGPGL HDY ETLE     DR V+ FDPVGTG SS ++P   A AD P             +A L  Q R ++ + +++ +HV   G     AL+     +   +SP  P P P ++     S+ LA P +     +P    +L + Y   G   PLC+  ++A     G        +     +R+ +G       G    P+ ++YG        + +  V  ++  +  G  +  V  ++F     L H+DE E YV  +
Sbjct:   36 TKAGSVLLGASVLGNAPRKAQAWCGKPYPPWAYRLRFNDGLIPVSLPGMAASADLFLRVVGDEQKEKDQGLAPILLVPGGPGLAHDYTETLEALVYGDRRVVSFDPVGTGQSSRSLPP--ALADGPPGGAETAEWKQAWSALLQEQLREILRFLEIDSYHVWAQGAACLPALQHTAAFAPPSSSPSSPSPSPTSLARGVKSLTLADPFV----FAPG-TRSLPSLYSDRGAAVPLCVTESVAGVKGGGXXXXXXXREDRVHYERQWEGLPELGKVGSR--PIFLSYGSTGDGEGSLDEAAVGRLRSRVEEGGREGGVVVKKF--GSRLPHVDEPEAYVDWL 365
[Close]
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A7S2RFF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFF4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.540e-22
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:  370 AAGVATTAAVTG--PDEAGAFCGEPYPYWAYFMDFDEVFIPFKFEGYSG-KLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSS 690
            A G +  AA  G  P  A AFCGEP+P WAY++ ++E  + F+    S   L+ R  G    +KKAQ  PV++IPGGPGLPHDY ETLEG    DR V+ FDP+GTG S+
Sbjct:    3 ALGASFAAAALGLLPGVASAFCGEPFPSWAYYIVYNEGLLAFQGPSQSSLDLYLRESGTQDAEKKAQVRPVLLIPGGPGLPHDYFETLEGLVKTDRRVVEFDPIGTGQST 112
[Close]
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A7S2UVU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVU9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.950e-17
Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = 1 
Query:  481 IPFKFEGYSGK-LFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSAIPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNVFHVLGHGTGAEAALELGRSSGKASPRPPGPEPEAILSVILASPVLGENELSPDFLE 963
            IP+   G   + +F R VG  + +KK + +P+V++PGGPGL H+YLET+E     +R V+ FDP+G G SS      +A+         +L +Q  AV D+ ++  +H+  HG G   ALE      K   R    + E + S++LASP     +   DF+E
Sbjct:    3 IPYTANGQKDQQIFIRVVGAERREKKLKLSPLVVVPGGPGLSHNYLETVEAVGQTERRVVFFDPIGAGLSSKPQDSQSASIE-------ALASQIAAVTDFLELKEYHIYAHGFGTLVALERLDQIQKGKGR----KGERVKSIVLASPA----KSGEDFIE 149
[Close]
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: A0A0M0JTV8_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JTV8_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.040e-16
Identity = 102/340 (30.00%), Postives = 151/340 (44.41%), Query Frame = 1 
Query:  406 PDEAGAFCGEPYPYWAYFMDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSAIPSVDAAADSPNLLGTASLVA-QTRAVVDYFKVNVF------HVLGHGTGAEAALELGRSSGKASPRPPGPEPEAILSVILASPVLGENEL---------------SPDFLEAL--------RTPYIKD---GNEPPLCLETAMASRSSDGFARGLAAMKQDRRSKGSAAAAAAGPLACPVLITYGKRDVIGDKTVAGIKQGLSGGDAPVECRRFEESGHLAHLDEREEYVSLVKNYVTFIDDA 1326
            PD A A+CGEP P WA+++ +D+  +PF+++G S ++  R VG+   ++KA   PVV+I G PG  +DYLETLE   + DR V +    GT          A  D P +L TA   A Q RAV    K          H++ HG GA  AL +  SS          +   + S+ L SP    ++L                P  + AL        R   I +   G   PL L  ++   +S   A G A  ++   ++ +AA+ A      PVL+  G     GDK +    +  S   + V    F  S HL  +DE E ++ ++   V F+D A
Sbjct:   27 PDRAAAWCGEPVPSWAFYLQWDQTALPFEYQGASAQVRYRVVGDIVRERKAGVPPVVVI-GTPGFGYDYLETLEALTVSDRRVAMVILAGTA---------AGEDLPPVLRTADACAEQIRAVCRALKPAALGGKPAVHLVAHGLGAVPALRVLASSAA--------DAIGVRSLTLISPWGALSDLRDEARAAISAATDIPGPQLMSALLPTVEARARASCIAEAAAGGGGPLLLAPSLYMDASAALA-GPALAERLAAAQPTAASGAISAGRIPVLLATG-----GDKDLVDASR-WSELPSTVTRATFAGSAHLPFVDESESFLYML---VDFLDKA 338
[Close]
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Match: W7TG89_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG89_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.560e-16
Identity = 68/211 (32.23%), Postives = 100/211 (47.39%), Query Frame = 1 
Query:  433 EPYPYWAYFMDFDEVFIPFKFEGYSGK--LFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSS-AIPSVDAAADSP---------NLLGTASLVAQTRAVVDYFKVNVFHVLGHGTGAEAALELGRSSGKASPRPPGPEPEAILSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMA 1029
            +PYP WAY + F++  IP    G      LF R VG+ + +K     P++++PGGPGL HDY ETLE     DR V+ FDPVGTG SS ++P   A AD P             +A L  Q R ++ + +++  HV   G     AL+   +    S  P        L+  + S  L +  +      +L + Y   G   PLC+  ++A
Sbjct:   51 QPYPPWAYRLRFNDGLIPVSLPGMPAPADLFLRVVGDEQKEKDQGLAPILLVPGGPGLAHDYTETLEALVYGDRRVVSFDPVGTGQSSRSLPP--ALADGPPGGAETAEWKQAWSALLQEQLREILRFLEIDSHHVWAQGAACLPALQHTAAFAPPSSAPSXXXXXXALARGVKSLTLADPFVFAPGARSLPSLYSDRGAAVPLCVTESVA 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig568.16043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2E0_9PHAE3.950e-16894.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLW3_ECTSI3.240e-14796.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXA0_9PHAE1.810e-9087.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XPS5_HETAK4.280e-4433.64Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835YII1_9STRA3.820e-2737.55Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A4D9CNP1_9STRA1.520e-2230.21Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2RFF4_9STRA2.540e-2250.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2UVU9_9STRA7.950e-1734.57Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0M0JTV8_9EUKA1.040e-1630.00Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
W7TG89_9STRA3.560e-1632.23Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig568contigEcto-sp13_S_contig568:2206..7342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score440.7
Seed ortholog evalue8.2e-121
Seed eggNOG ortholog2880.D8LLW3
Model size2140
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG OGs2E7EQ@1,2SE0Z@2759
Ec32 ortholog descriptionAlpha/beta hydrolase fold-1
Ec32 orthologEc-14_001920.1
Cds size1299
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig568.16043.1prot_Ecto-sp13_S_contig568.16043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig568 2987..7282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.9181576-UTR-Ecto-sp13_S_contig568:2205..29861681463785.9181576-UTR-Ecto-sp13_S_contig568:2205..2986Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig568 2206..2986 -
1681463785.9898653-UTR-Ecto-sp13_S_contig568:7282..73421681463785.9898653-UTR-Ecto-sp13_S_contig568:7282..7342Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig568 7283..7342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.9288445-CDS-Ecto-sp13_S_contig568:2986..30551681463785.9288445-CDS-Ecto-sp13_S_contig568:2986..3055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig568 2987..3055 -
1681463785.9392755-CDS-Ecto-sp13_S_contig568:3622..37581681463785.9392755-CDS-Ecto-sp13_S_contig568:3622..3758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig568 3623..3758 -
1681463785.9491339-CDS-Ecto-sp13_S_contig568:4393..45481681463785.9491339-CDS-Ecto-sp13_S_contig568:4393..4548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig568 4394..4548 -
1681463785.9586284-CDS-Ecto-sp13_S_contig568:5264..55041681463785.9586284-CDS-Ecto-sp13_S_contig568:5264..5504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig568 5265..5504 -
1681463785.969088-CDS-Ecto-sp13_S_contig568:5872..60761681463785.969088-CDS-Ecto-sp13_S_contig568:5872..6076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig568 5873..6076 -
1681463785.9793239-CDS-Ecto-sp13_S_contig568:6787..72821681463785.9793239-CDS-Ecto-sp13_S_contig568:6787..7282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig568 6788..7282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig568.16043.1

>prot_Ecto-sp13_S_contig568.16043.1 ID=prot_Ecto-sp13_S_contig568.16043.1|Name=mRNA_Ecto-sp13_S_contig568.16043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=433bp
MGRPPQLLQVVAMICLSCLPSVAFTPGAIDMVFLRHRQQRDDCCSRSTAR
GDHEQQGGSISTSLANKRSCRQDQHSRNTELRAAGGGTSDRGKFLQRVAA
GTFAAGVATTAAVTGPDEAGAFCGEPYPYWAYFMDFDEVFIPFKFEGYSG
KLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLL
FDPVGTGNSSAIPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNVFHVLG
HGTGAEAALELGRSSGKASPRPPGPEPEAILSVILASPVLGENELSPDFL
EALRTPYIKDGNEPPLCLETAMASRSSDGFARGLAAMKQDRRSKGSAAAA
AAGPLACPVLITYGKRDVIGDKTVAGIKQGLSGGDAPVECRRFEESGHLA
HLDEREEYVSLVKNYVTFIDDAWSGNSGDTKK*
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mRNA from alignment at Ecto-sp13_S_contig568:2206..7342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig568.16043.1 ID=mRNA_Ecto-sp13_S_contig568.16043.1|Name=mRNA_Ecto-sp13_S_contig568.16043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig568:2206..7342- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGCCGAACGAGGTGCTGCGGCACCTCGCACACCACACACAGACGCTGC
ACCACACACCATGGGCCGTCCACCTCAGCTGCTTCAAGTGGTTGCGATGA
TTTGCCTCTCTTGCTTGCCATCGGTTGCGTTCACGCCCGGGGCTATCGAC
ATGGTGTTCCTTCGACACCGGCAGCAGCGGGACGACTGCTGTTCACGTTC
AACCGCCCGCGGTGATCATGAACAGCAGGGAGGGAGTATCAGCACTTCGC
TTGCCAACAAGCGCAGCTGTCGACAGGACCAGCACTCCCGTAACACAGAG
CTGAGAGCCGCAGGGGGCGGCACAAGCGACAGAGGGAAGTTCTTGCAGCG
GGTTGCAGCGGGAACTTTCGCTGCAGGCGTAGCCACGACAGCTGCTGTTA
CTGGGCCGGACGAAGCGGGGGCGTTTTGCGGCGAACCCTACCCGTACTGG
GCCTACTTCATGGACTTCGACGAGGTCTTTATCCCTTTCAAGTTCGAGGG
GTACTCCGGAAAGCTGTTTGCAAGGACTGTCGGGAACGGCAAGGACCAAA
AAAAGGTGCGAAGCATCACACAACATTCAATGCACTTGCTATAATATAAA
GTGCTGCTGTTGGCTAAATGTGACAGATCTCCGCATGATTTCGTTACATA
TGACGGACTACTGTGTGTCCGGTCCAGTGCAGTCGCATTTTTTCCTCTGC
CGGTCGGTCTGTTCAACCTCCTGGTAAGGTACGCTAAGGTTATTGCTGTA
CTGGGGTTCCAATGTCGTCGGCTCAAAAATAATCTCTCTGTGCAGTTGCT
GCTTTATCGTTTGTCACATCCAAATCTATCATAAACGACATTTTCACATA
GGAGAGGTGCAGTGCACAGCAGACGGTCGTGATCGAAGGTGGATTGCCAA
AAGACGTGCACCCTCACTCCCGAGCCACGGTGTGAGTGAGGCTGCAGAAG
CAGCAGCAAACACGCTGTACAACCGCCACCCAGCCCCCACCTCCCCTCCT
TGTCGCCAACGATCACCACCACCCAGAGCGTTCGCACCATGGCACATCCT
ACCGCCAACCCTACCGTCGAAATGTACGCTGTTCGGAGAACCTTGTAGAA
ATACGAGTTGATGTTCATACACACTATGAAAAAAGTGCTCATCTATCCTG
GACTCTCATCTACTGTCGAGGAGGAAGAGCTAAACTTGTTGCTGTCTGTG
AGAAAAAAAAGGAAACAGTCTCAACACCACACCACCAAAAAAACAAACAC
ACACACACATATGCAGGCACAGCACAACCCCGTTGTCATCATCCCGGGGG
GGCCAGGATTACCCCACGACTACCTCGAGACGCTGGAGGGGGCGGCGATG
GAGGACCGGGTGGTGCTGCTCTTCGACCCCGTGGGCACGGGCAACTCGTC
GGCCATTCCGTCCGTCGACGCCGCGGCGGACTCGCCCAACCTTCTTGGCA
CTGCGTCCCTCGTCGCGCAGGTGATGCTCGGTGAAATGTCAGTCACTGAG
AAAAATATGTACTCACAGCAACTATTTTTCAGGCCACGCGCGACGACGAG
AGAATCCGACTGGCGGATTTTATTGGGGCGATTTTTCGGAGCTTTCTGGA
ACTCCTTGGCGTAATCAGCTACAACACAGTACTATTGAGCCGTAGCTCCA
TCAAAGCAGAGTCGCAAAGTAGGAAAATTGATGGTCCTTGCGCGAATGTT
TTGTTCTCTTGGCTACCATCCTTGTTTCGCCCCGCTTGTCATACCCCCAC
CTCCCACCCACCCCGCCCCGCCATGCCCCTGTTTCTTCTTCTGCGCGCGC
CACGCCCTTTCTGCTCGTTCGCTTTCCGACCAGAACAGACCCGTGCGGTC
GTTGACTACTTCAAGGTCAACGTGTTCCATGTGCTAGGACACGGCACCGG
CGCAGAGGCCGCCCTAGAGCTCGGCAGGAGCTCGGGCAAGGCCTCCCCCC
GCCCCCCGGGGCCTGAGCCAGAAGCGATCCTGTCGGTGATCCTGGCTAGC
CCGGTGTTGGGCGAAAACGAGCTGTCGCCTGACTTCCTAGAAGCGCTCAG
GACTCCTTACATCAAGGATGGGAACGAGGTCGGTGTTGATCTTGCGGTCC
AGACTGAAATTGTTTGGCACTCGGCGCTTTTTTATTGATACACCCCCGTA
TTTCGGCAATAATGGGCGTGCGCTCTGACGCATTCAGAATTTACCACGAC
GACAGTAGTAGTTGTTTGCGCTTCTTAATTCCGGTTGCACAGCTGCAGTC
AGGCGATGATGCCTGGCTAAAGTTTCGTCAATAGAGGAGAATTCCAGCAG
CGGGACTCGAAAGACGGAAGTCTTTGGCCTCCATGCGGTTCGAACAAATA
GCGTCGACGGGCAGAAACCCTCGTTGAGCACAAGACGACACACGCAACGC
TCGTCTCCCATCCCTCCTCCCGTTGTTCTTGCCACGACAGAGGTGTTTGT
GCGCCGATCGCTTCGCCCTTGTAGCTGATACGTCCTAGACAAGCTGGAGG
AAAGATGGGGCAGCAAAAAAACACATTCGAAATCGAAAGAGCTACCTCCT
GCGTGACCGTCCTCTTGTTTACCCCGCCAGATACGTCAGAAATATGCACC
GAAAGGCGTGTACACCGGCACCGGAACAGACTCGACGAACGCACACACCG
TTGTTGTTGAATGACAGAATGGGTGTCTCAAGCCTGCCTTTTTTTTGCTC
ACGAAACACACACCTTTGTTGTTGAATCGCAACACGTGTGTTTCGAAGCC
GGCTCATTTTTTCTTCACTTCTTCCGTCGCATCCCCCCCCCCAGCCTCCT
CTGTGTCTTGAAACCGCGATGGCCAGCCGGAGCTCGGACGGGTTCGCCAG
GGGGCTCGCTGCGATGAAGCAAGACAGGAGATCGAAGGGCTCGGCGGCAG
CAGCAGCGGCGGGGCCGCTGGCGTGCCCGGTGCTCATCACCTACGGGAAG
TGAGATACTTATAAGACAAACGAGCATCATTGCAAATGTTCACATCTAGA
TTGTTAGTAGACGTGCTGAGAGCTTACGGTGCTTTGAACCATTTCTGCCC
AGAAGACAAAAGAAAAAAACTAGTAGGGGTTTTAAGTACGACGAACAAGC
GTAATTGCTATTGAGACTTTTTTTAAAGACGAACAAAATTTTGTTCTGTT
TCTGATCTGGGACGAAGCTATGTTTAGGGGACCACGGGCACGCAGTGTCT
GCTGTTCGGTTGACGTTGTGCAGTACGGTACGGTTGTCGCATGCACGGTA
CGGTTCGCGGTTCTTGAGTACCGTAACAGCAGTGTGGGCGAACACATAGG
TTTGCCATCGTTCGATTTCGTACAATCGATTGCTGCGCCACCAAGAGGGT
GCTATCGAACTCCGACTGACACTCCCAAGAAAAGCTAGCTCTCGACGAGA
TTATTTTTTACACACCACCCTTTCTTCGGTATTGGCAGCCAAGCCGCCAA
AGCCTCATGGTTGTTCTGCTGTGCCCCCCCCCCCCCCGGGGCGTCCTCGC
CTTTCCCTTTTTCTACTTTCCGCCTGGGGTTTGAAAAACGCGGTGCATTG
TCACTCGTCGGACTGCATTGAACCTCCATGACAGGCGGGATGTCATCGGC
GACAAGACCGTCGCTGGCATCAAGCAGGGGTTGTCGGGAGGGGACGCTCC
CGTCGAGTGTAGGCGCTTCGAAGAAAGCGGCCACCTGGCGCATCTGGACG
AGAGAGAGGAGTACGTCTCGGTGAGCAAGAAGTACATGAATGGGTACGCT
TACACCGCCGTATTGTATGACCGGAGGCACAGCAGTATCTGACGTCCACC
CGCACTACCCTCTGGCGGGTCCACTCTTTTTTTTTTTTTCCAACGGACCC
CCCGCCACCGTAAAGGGGGGTGGAGGTGTGTCCGGGGGGTCGGGGTTAGC
ATCCTGTACGGTGCGAGCTATACTTCGTCAGGTTGCAGGAGGGTTGTAAC
TATGACTTGGTGATGGTTTTGATACGGTGCGCTGGATGAATGGATGTGTG
TGTAGCAATACAGGCGAGGTTTGCGCTCTGTACGAAACAGGGGTTGTGAA
GATCGACTGAACGCGCCAATCCTACCTCTTTCTTCTTTTTTTTCACTTTC
GATCGTTGGGGCTGGATGCATGAATCTCTCTACCCACAACGTCCGTACAT
GAAACCCCCAAGTCCCCCCCCCTGCTTTTCTTGGTATGGGTTGTCTGGTG
TACGGGTTATTGTTACCAATATATGTGATCTCATACTCCGCCCCCCCGGC
GCCATCGTTTCGTCGGTCTCCCGGACAAAAACAACAGCTGGTGAAGAACT
ACGTGACCTTCATCGACGACGCTTGGTCGGGCAACAGCGGCGACACAAAA
AAATGACCGACACACCATAGCGCCACTACCAAGGTGTTAGATAGCCACTA
GCGTTACTTGATGTGCCAACCTCCCGCCCTCCCACCCGCTGGTCCATCGG
TTTTTGCCGACGGTCAGGGCCGGCGGCAAACGGGGGGGTGTTCGGAACGC
CTGTAACACATGAGACGGGGTTTCCTGTTAGTCTCTGGTTGGCAGCGCAA
GTAGCCGCCGCGGCATGCACCTGGTATGTGGTAGTGTTGGTGCTGATTTC
GCGATGAGTGTGGTAAAGGTTTCTATTGTAGGGTCATTCACATGAGCAGT
CCGTTCCTCGGGGTCGAGCGGGGTGATGGGTTGGTTTCTACGTGGTGGGT
TGGATTTGAATGTTCTATCGGCGTAGGGGTGGTTTACCAAGGAGAGGTGC
GCCGTGGAGGTTGCGGTTCTTCCTAGGAGTCTGCCGTTAACGATGTTGGT
GTAGGTGCGGCTGTCAATTGGCACCGGGGTTGGTATTGTTGTAGTAGGTG
GGCAAATTAGAAAGTGCTGTATTCAATTTAACACCTCATCACCCACAGCA
GTAGACGTGCCTTTCATTTTTCATGGCCATAGACCATTAGAGCCCTGTTA
ATAGTGAGACTTTGAGCCTCTGCCCAAACCCGACGTTTCTCATCTCTGGG
CCGCAAGTGCATCACAGCGGTCACAACGGGAAATCCCGCCCTTTTCTGTG
TGCATGACCTTTGTTGTGATGCTGGTGGTGGTGAAAACAAACATATACTA
CACAGATCACCACGGGTCCATTTACCTGCGTCGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig568:2206..7342-

>mRNA_Ecto-sp13_S_contig568.16043.1 ID=mRNA_Ecto-sp13_S_contig568.16043.1|Name=mRNA_Ecto-sp13_S_contig568.16043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1299bp|location=Sequence derived from alignment at Ecto-sp13_S_contig568:2206..7342- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCGTCCACCTCAGCTGCTTCAAGTGGTTGCGATGATTTGCCTCTC
TTGCTTGCCATCGGTTGCGTTCACGCCCGGGGCTATCGACATGGTGTTCC
TTCGACACCGGCAGCAGCGGGACGACTGCTGTTCACGTTCAACCGCCCGC
GGTGATCATGAACAGCAGGGAGGGAGTATCAGCACTTCGCTTGCCAACAA
GCGCAGCTGTCGACAGGACCAGCACTCCCGTAACACAGAGCTGAGAGCCG
CAGGGGGCGGCACAAGCGACAGAGGGAAGTTCTTGCAGCGGGTTGCAGCG
GGAACTTTCGCTGCAGGCGTAGCCACGACAGCTGCTGTTACTGGGCCGGA
CGAAGCGGGGGCGTTTTGCGGCGAACCCTACCCGTACTGGGCCTACTTCA
TGGACTTCGACGAGGTCTTTATCCCTTTCAAGTTCGAGGGGTACTCCGGA
AAGCTGTTTGCAAGGACTGTCGGGAACGGCAAGGACCAAAAAAAGGCACA
GCACAACCCCGTTGTCATCATCCCGGGGGGGCCAGGATTACCCCACGACT
ACCTCGAGACGCTGGAGGGGGCGGCGATGGAGGACCGGGTGGTGCTGCTC
TTCGACCCCGTGGGCACGGGCAACTCGTCGGCCATTCCGTCCGTCGACGC
CGCGGCGGACTCGCCCAACCTTCTTGGCACTGCGTCCCTCGTCGCGCAGA
CCCGTGCGGTCGTTGACTACTTCAAGGTCAACGTGTTCCATGTGCTAGGA
CACGGCACCGGCGCAGAGGCCGCCCTAGAGCTCGGCAGGAGCTCGGGCAA
GGCCTCCCCCCGCCCCCCGGGGCCTGAGCCAGAAGCGATCCTGTCGGTGA
TCCTGGCTAGCCCGGTGTTGGGCGAAAACGAGCTGTCGCCTGACTTCCTA
GAAGCGCTCAGGACTCCTTACATCAAGGATGGGAACGAGCCTCCTCTGTG
TCTTGAAACCGCGATGGCCAGCCGGAGCTCGGACGGGTTCGCCAGGGGGC
TCGCTGCGATGAAGCAAGACAGGAGATCGAAGGGCTCGGCGGCAGCAGCA
GCGGCGGGGCCGCTGGCGTGCCCGGTGCTCATCACCTACGGGAAGCGGGA
TGTCATCGGCGACAAGACCGTCGCTGGCATCAAGCAGGGGTTGTCGGGAG
GGGACGCTCCCGTCGAGTGTAGGCGCTTCGAAGAAAGCGGCCACCTGGCG
CATCTGGACGAGAGAGAGGAGTACGTCTCGCTGGTGAAGAACTACGTGAC
CTTCATCGACGACGCTTGGTCGGGCAACAGCGGCGACACAAAAAAATGA
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