mRNA_Ecto-sp13_S_contig5679.16041.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5679.16041.1
Unique NamemRNA_Ecto-sp13_S_contig5679.16041.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A0A6H5J8S6_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S6_9PHAE)

HSP 1 Score: 808 bits (2086), Expect = 8.490e-289
Identity = 512/619 (82.71%), Postives = 525/619 (84.81%), Query Frame = 3 
Query:    9 MNKPPQQTSTSRGSGSSGDRNQAEGGRELVLPVGGRGAATAVGAAAXXXXXXXXXAGGRVAGGGXXXXTRXXXXXXXXXAPASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEESCEFKHPNFRKGQRHLLGLIRRKAHSTSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSAGVRHHDSRTVAAQETTGSVDRIAVELRAMCNRVTHLEAEIGLIKHRHNHLRAESQALLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELSELPYLGLHPEDHEQDQHHHXXXXXXXXXXXXXXXXXXXXXYTDERGPTPMPEEPPAHFRGSSLGGERFVAGGAAGDGDPTARGGGVGAARYSRSGTALASVVAAALASNASEEDGEAAGPLHDPPRPRLGGPGRETAWGGMAPNVDLSSRSRGLASATFSGPAAGGSGHGAAEFGRSGNVSCNGSEEGAARLSSDAAAASHSSRAPPVDDRGRSTTAVARAAEPAVAAARGGSLPQGSSPRCNYLYSVRGEREQVEAGRGVVRAEKRPMRGGGEGDTPGERGGGGGQDGADQSGSVARGKRRAV 1865
            MNKPP QT TSRG GSSG RNQAEGGR LV+PVG  GAATAVGAAA    XXXXX         XXXX  XXXXXXXXXAPASFLDKLWNILNEPHLSKHITWN+DGDGI++N+PAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDE+SCEFKH NFRKGQRHLLGLIRRK HS SAS XXXXXXXXXXXXXXXXXXXXXX            SPSAG+RHHDS +V AQET GSVDRIAVELRAMCNRVTHLEAEIGLIKHRHNHLRAESQ LLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELSELPYLGL PEDHEQ                 XXXXXXXXX  D RGPTPMPEE PAHFRG S GGERFVAG AA DGDPTARGGGVGAA YSRSG ALASV+AAAL SNASEEDGEA G LHDPPRPRLGGPGR TAWGGMAPN+DLSS SRGLA+ATFSGPA GGSG+GAAEFG SGN SCNGSEEGAA LSSDAAAASH SRAPPVDDRGRST  VARAAEPA  AA GGS PQGSSPR NYLYSVRGEREQVEAGRGVVR EKRP RG GEG TPGE GGGGGQ+GAD SGSVAR KRRAV
Sbjct:    1 MNKPPPQTPTSRGGGSSGGRNQAEGGRNLVVPVGSGGAATAVGAAAAPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPASFLDKLWNILNEPHLSKHITWNKDGDGILINYPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLGLIRRKGHSMSASNXXXXXXXXXXXXXXXXXXXXXXG-----------SPSAGIRHHDSHSVTAQETKGSVDRIAVELRAMCNRVTHLEAEIGLIKHRHNHLRAESQVLLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELSELPYLGLRPEDHEQ-----------------XXXXXXXXXXXDARGPTPMPEERPAHFRGRSFGGERFVAGDAAEDGDPTARGGGVGAAGYSRSGAALASVIAAALVSNASEEDGEADGALHDPPRPRLGGPGRGTAWGGMAPNIDLSSPSRGLATATFSGPATGGSGNGAAEFGGSGNASCNGSEEGAAWLSSDAAAASHGSRAPPVDDRGRSTAPVARAAEPA--AAGGGSRPQGSSPRSNYLYSVRGEREQVEAGRGVVRTEKRPNRGSGEGGTPGEWGGGGGQNGADHSGSVARSKRRAV 589
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: D7FT89_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT89_ECTSI)

HSP 1 Score: 721 bits (1860), Expect = 9.470e-255
Identity = 465/629 (73.93%), Postives = 480/629 (76.31%), Query Frame = 3 
Query:    9 MNKPPQQTSTSRGSGSSGDRNQAEGGRELVLPVGGRGAATAVGAAAXXXXXXXXXAGGRVAGGGXXXXTRXXXXXXXXXAPASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEESCEFKHPNFRKGQRHLLGLIRRKAHSTSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSAGVRHHDSRTVAAQETTGSVDRIAVELRAMCNRVTHLEAEIGLIKHRHNHLRAESQALLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELSELPYLGLHPEDHEQDQHHHXXXXXXXXXXXXXXXXXXXXXYTDERGPTPMPEEPPAHFRGSSLGGERFVAGGAAGDGDPTARGGGVGAARYSRSGTALASVVAAALASNASEEDGEAAGP--------LHDPPRPRLGGPGRETAWGGMAPNVDLSSRSRGLASATFSGPAAGGSGHGAAEFGRSGNVSCNGSEEGAARLSSDAAAASHSSRAPPVDDRGRSTTAVARAAEPAVAAARGG--SLPQGSSPRCNYLYSVRGEREQVEAGRGVVRAEKRPMRGGGEGDTPGERGGGGGQDGADQSGSVARGKRRAV 1865
            MNKPP+QTSTSRG GSSGD+ QAEG R LV  +GG GAATAVGAAA    XXXXXAGGR     XXXX  XXXXXXXXXAPASFL+KLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEESCEF+H NFRKGQRHLLGLIRRKAHSTS                                                  VAAQET GSVDRIAVELRAMCNRVTHLEAE+G+IKHRHNHLR ES+ALLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELS LP + LHPEDHEQ+QH        XXXXXXXXXXXXXX YTDERGP PMPEEPPAHFRGS LGGERF AGGAA  GDPTARGGGVGAARYSRSG ALASVVAAALASNASEED              LHDPPRPRLGGPGRETAWGGMAPNVDLSS SRGLA+ATFSGPAA GSG GAAEFG         SEEGAARLSSDAAAAS  SRAPPVDDRGRSTTAVAR              SLPQGSSPRC+YLY+VRG REQVEAGRG          G GEG TPGERG    Q+GAD SG+VARGKRRAV
Sbjct:    1 MNKPPRQTSTSRGGGSSGDKKQAEGDRNLVKHIGGGGAATAVGAAAAPTPXXXXXAGGRXXXXXXXXXXXXXXXXXXXXAPASFLNKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEESCEFQHQNFRKGQRHLLGLIRRKAHSTS--------------------------------------------------VAAQETKGSVDRIAVELRAMCNRVTHLEAEMGMIKHRHNHLRVESRALLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELSGLPSVVLHPEDHEQEQH--------XXXXXXXXXXXXXXQYTDERGPIPMPEEPPAHFRGSDLGGERFGAGGAAEVGDPTARGGGVGAARYSRSGAALASVVAAALASNASEEDXXXXXXXXXXXXXALHDPPRPRLGGPGRETAWGGMAPNVDLSSPSRGLATATFSGPAAAGSGTGAAEFGXXXXXXXXXSEEGAARLSSDAAAASKGSRAPPVDDRGRSTTAVARXXXXXXXXXXXXXXSLPQGSSPRCSYLYAVRGGREQVEAGRGGXXXXXXXXXGSGEGGTPGERGXXXXQNGADHSGTVARGKRRAV 571
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A0A316V749_9BASI (Winged helix DNA-binding domain-containing protein (Fragment) n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V749_9BASI)

HSP 1 Score: 105 bits (261), Expect = 2.070e-23
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 3 
Query:  255 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEES----CEFKHPNFRKGQRHLLGLIRRK 545
            SF+ KL+++L +  + + I W   G    V +PA+FAK VLP ++KH+N+QSFVRQLN+YGFHK  H   G  E      EFKHPNFR+G+ HLL  I+RK
Sbjct:    1 SFVSKLYSMLEDDTIEEMIAWGPSGTTFSVANPAEFAKVVLPNWFKHSNWQSFVRQLNMYGFHKVNHTYQGTPEEEIQVWEFKHPNFRRGEVHLLSEIKRK 101
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A0A7S2G5V1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G5V1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.200e-22
Identity = 53/105 (50.48%), Postives = 77/105 (73.33%), Query Frame = 3 
Query:  249 PASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEESCEFKHPNFRKGQRHLLGLIRRKAHSTSA 563
            PA+FL+KL++IL +   S+HI W+ +G  I++     FAK+VLPK++KH+N+QSFVRQLN+Y F KTRHD +      EF+ PNF++G+R++L  I+RK   TSA
Sbjct:   93 PAAFLEKLYDILEDTIYSEHICWSMEGQSILIKKVDSFAKSVLPKFFKHSNFQSFVRQLNMYAFSKTRHDPNW----REFRQPNFQRGKRNMLKFIKRKTSDTSA 193
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: W5ND25_LEPOC (HSF_DOMAIN domain-containing protein n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5ND25_LEPOC)

HSP 1 Score: 107 bits (267), Expect = 4.100e-22
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 3 
Query:  246 APASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDG----DEESCEFKHPNFRKGQRHLLGLIRRKAHSTS 560
            A  +FL KLW ++ +P  +  I+W+++G    V++  +FAK +LP Y+KHNN  SFVRQLN+YGFHK  H D G     EES EF+HP+F+ GQ HLL  I+RK  S S
Sbjct:   18 AVPAFLSKLWTLVEDPSTNDLISWSRNGSCFQVSNERRFAKEILPLYFKHNNMASFVRQLNMYGFHKMAHADAGLPRDREESVEFRHPHFQCGQLHLLDRIKRKVVSIS 126
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A0A834EEH4_9CHIR (Heat shock transcription factor 2 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834EEH4_9CHIR)

HSP 1 Score: 102 bits (255), Expect = 5.810e-22
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 3 
Query:  255 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDG-----DEESCEFKHPNFRKGQRHLLGLIRRKAHST 557
            +FL KLW ++ E H ++ ITW+Q+G   +V    +FAK +LPKY+KHNN  SFVRQLN+YGF K  H D G      +   EF+HP F++GQ  LL  I+RK  S+
Sbjct:    9 AFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSS 114
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A0A8C1G7L3_CYPCA (Si:dkey-18a10.3 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1G7L3_CYPCA)

HSP 1 Score: 101 bits (251), Expect = 1.440e-21
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = 3 
Query:  255 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEESCEFKHPNFRKGQRHLLGLIRRK 545
            +F+ KLW ++  P     I W+QDG   +V    +F+K VLP Y+KH+N  SFVRQLN+YGFHK  H D      D   +  EF+H NF++ Q HLLGLIRRK
Sbjct:   15 AFVSKLWALVEAPSTDNLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVDCVEFQHENFQRAQPHLLGLIRRK 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A0A672NZZ5_SINGR (Si:dkey-18a10.3 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NZZ5_SINGR)

HSP 1 Score: 101 bits (252), Expect = 1.560e-21
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 3 
Query:  255 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDG-----DEESC-EFKHPNFRKGQRHLLGLIRRK 545
            +F+ KLW ++  P  +  I W+QDG   +V    +F+K VLP Y+KH+N  SFVRQLN+YGFHK  H D G      + +C EF+H NF++ Q HLLGLIRRK
Sbjct:   15 AFVSKLWTLVEAPSTNDLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVNCVEFQHENFQRAQPHLLGLIRRK 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A0A2K6G5E4_PROCO (HSF_DOMAIN domain-containing protein n=1 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6G5E4_PROCO)

HSP 1 Score: 102 bits (255), Expect = 2.120e-21
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 3 
Query:  255 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDG-----DEESCEFKHPNFRKGQRHLLGLIRRKAHST 557
            +FL KLW ++ E H ++ ITW+Q+G   +V    +FAK +LPKY+KHNN  SFVRQLN+YGF K  H D G      +   EF+HP F++GQ  LL  I+RK  S+
Sbjct:    9 AFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSS 114
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BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Match: A7RMH2_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RMH2_NEMVE)

HSP 1 Score: 102 bits (253), Expect = 2.910e-21
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 3 
Query:  255 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDG----DEESCEFKHPNFRKGQRHLLGLIRRKA 548
            +FL KLW ++ +P    HI+WN+ G G +V+  A FA+ +LPKY+KHNN+ SFVRQLN+YGF K    + G    D +  EF +PNF+ GQ  LL  ++RKA
Sbjct:   17 AFLVKLWKLVEDPQYDMHISWNRIGSGFLVHDQATFAREILPKYFKHNNFASFVRQLNMYGFRKVIGAEQGGLRSDNDVWEFHNPNFQCGQPQLLENVKRKA 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5679.16041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8S6_9PHAE8.490e-28982.71HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D7FT89_ECTSI9.470e-25573.93Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
A0A316V749_9BASI2.070e-2350.50Winged helix DNA-binding domain-containing protein... [more]
A0A7S2G5V1_9STRA1.200e-2250.48Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
W5ND25_LEPOC4.100e-2249.54HSF_DOMAIN domain-containing protein n=2 Tax=Lepis... [more]
A0A834EEH4_9CHIR5.810e-2248.11Heat shock transcription factor 2 n=1 Tax=Phyllost... [more]
A0A8C1G7L3_CYPCA1.440e-2148.54Si:dkey-18a10.3 n=1 Tax=Cyprinus carpio TaxID=7962... [more]
A0A672NZZ5_SINGR1.560e-2149.51Si:dkey-18a10.3 n=1 Tax=Sinocyclocheilus grahami T... [more]
A0A2K6G5E4_PROCO2.120e-2148.11HSF_DOMAIN domain-containing protein n=1 Tax=Propi... [more]
A7RMH2_NEMVE2.910e-2148.04Predicted protein n=1 Tax=Nematostella vectensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5679contigEcto-sp13_S_contig5679:281..5984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score109.4
Seed ortholog evalue6.2e-21
Seed eggNOG ortholog7918.ENSLOCP00000018534
Model size1868
KEGG koko:K09414
KEGG Pathwayko04212,ko05134,map04212,map05134
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Si dkey-18a10.3
EggNOG OGs3A0U4@33154,3BPZU@33208,3D6M1@33213,48EEJ@7711,49ASP@7742,4A7H4@7898,COG5169@1,KOG0627@2759
Ec32 ortholog descriptionHeat shock transcription factor
Ec32 orthologEc-06_003680.1
Cds size1860
COG Functional cat.K
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5679.16041.1prot_Ecto-sp13_S_contig5679.16041.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5679 289..5984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.7654135-UTR-Ecto-sp13_S_contig5679:280..2881681463785.7654135-UTR-Ecto-sp13_S_contig5679:280..288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5679 281..288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.7787647-CDS-Ecto-sp13_S_contig5679:288..3601681463785.7787647-CDS-Ecto-sp13_S_contig5679:288..360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 289..360 +
1681463785.7890658-CDS-Ecto-sp13_S_contig5679:1928..21711681463785.7890658-CDS-Ecto-sp13_S_contig5679:1928..2171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 1929..2171 +
1681463785.7990708-CDS-Ecto-sp13_S_contig5679:2472..25711681463785.7990708-CDS-Ecto-sp13_S_contig5679:2472..2571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 2473..2571 +
1681463785.8089695-CDS-Ecto-sp13_S_contig5679:3332..36201681463785.8089695-CDS-Ecto-sp13_S_contig5679:3332..3620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 3333..3620 +
1681463785.8197432-CDS-Ecto-sp13_S_contig5679:3769..38441681463785.8197432-CDS-Ecto-sp13_S_contig5679:3769..3844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 3770..3844 +
1681463785.82996-CDS-Ecto-sp13_S_contig5679:4537..46751681463785.82996-CDS-Ecto-sp13_S_contig5679:4537..4675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 4538..4675 +
1681463785.8399086-CDS-Ecto-sp13_S_contig5679:5039..59841681463785.8399086-CDS-Ecto-sp13_S_contig5679:5039..5984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 5040..5984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5679.16041.1

>prot_Ecto-sp13_S_contig5679.16041.1 ID=prot_Ecto-sp13_S_contig5679.16041.1|Name=mRNA_Ecto-sp13_S_contig5679.16041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=620bp
MNKPPQQTSTSRGSGSSGDRNQAEGGRELVLPVGGRGAATAVGAAAAPTP
APAPAAGGRVAGGGGGGGTRGGKRGGEAGAPASFLDKLWNILNEPHLSKH
ITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHD
DDGDEESCEFKHPNFRKGQRHLLGLIRRKAHSTSASNSGSSNNNNNNNNN
NSNNNSSNNNSNSSSSHHNSASPSAGVRHHDSRTVAAQETTGSVDRIAVE
LRAMCNRVTHLEAEIGLIKHRHNHLRAESQALLRLLLSEGGRRLEEKALA
VLGQLPHTSGEAELSELPYLGLHPEDHEQDQHHHQHHQHQHHHHYQHHQH
DQHYQYTDERGPTPMPEEPPAHFRGSSLGGERFVAGGAAGDGDPTARGGG
VGAARYSRSGTALASVVAAALASNASEEDGEAAGPLHDPPRPRLGGPGRE
TAWGGMAPNVDLSSRSRGLASATFSGPAAGGSGHGAAEFGRSGNVSCNGS
EEGAARLSSDAAAASHSSRAPPVDDRGRSTTAVARAAEPAVAAARGGSLP
QGSSPRCNYLYSVRGEREQVEAGRGVVRAEKRPMRGGGEGDTPGERGGGG
GQDGADQSGSVARGKRRAV*
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mRNA from alignment at Ecto-sp13_S_contig5679:281..5984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5679.16041.1 ID=mRNA_Ecto-sp13_S_contig5679.16041.1|Name=mRNA_Ecto-sp13_S_contig5679.16041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5704bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5679:281..5984+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAAAAATATGAACAAGCCGCCGCAGCAAACATCAACTAGCCGTGGCAGT
GGCTCTTCGGGCGACAGGAATCAGGCGGAGGTGAGAGACAGAGAGCTACA
CTGCTTGTGTGCGTCTTGCTTAGGGAGTAGCAGTCAACGAGAGCGCGTCA
CCGGTTCATCATCAATGCTGCGGCTTGCGCCTATACAAACACATGAATCA
CGTACCCACAACGCGGCGAAATAGAACGGGGAACGGATAATGAATGACAC
CCGATCGTCTCTGCGTCACTCACACAATCCCCCGAGATGCCCAGGCCGAA
GTAGCCGGTGAGCTTTGGCGAATACGTGACGAGTGAGCCTTACGCCTAGC
TGAGATTGATAGAAATCTTATCGACTCAGTTCTATTCACGGTGCAGGAAC
TCGATTCGATCGCCCGCCGGCATTCATCATCGGTTGTGAATACTGCTGTG
TAGAGCGGAAGCACCTTTCGAAAGCACGTTGTCCGACCTTCTATCTACTT
CTAGAAGGAACGAGAGGATCTATTGATGCATCGGTATCTAGGGTCAGCTT
GTTACCTGGTGAAGGGAAAAGCTTGTCGCACAAATTCCCGCCCAATCTCA
TTTTCATATTGTAATTTACTGCGCATCGAGGTTTTCTCGTCACAGCTATT
GGTAGAAGCAACAGCGTTCGTGCTGGTGCCATGGTAGCATCTCTGAAGCG
GTGCATTTTTACCTCCGACTGAAATTTTGTGCCCCCTAACTTCATCTTCG
TTCGGAATGCGGCTGCCGCCGAGATTGAGGCACACGATCGACCATTCGAC
ACTATTGACAGCACGAAACAGTTGTGCCCAAACTGGCACTGTTGACAGCA
GCCCTTCAATACCGGCACCGGCACTATTGCTGGGTTGGTGTAGTGCGTGC
GCTATTGCTGGGTTGGTGTAGTGCGTGCGCTCTGTACTGTACAAAATACC
AGTAGCAATCTAAGGCGGTACGGCAGCGGTAGACAACACCCCGCCATCCC
CACAGAAGTGATTTTCGCACGTCTGTGTTACGTCACAGCAAGAGTCATCA
CCGTACTGTGTGTCTTCGTTTCTCTGTCGACCTTCGAATCTTCTGTATGC
GAAACTCTCCAGAAGGAGATCTGTTTTGCTTCCATAGACCGCGTTGAGCC
CTGCTTCTGTGCTGTCGTCCCTCCTACTTACTACTGCTGTACGTTGCTAC
ACTCGCTGTCATTTCCCAAGCCGAGATCCTTCCATGTCCACCAACACGTG
TAGTTTAACGGCCTCAAGGGCCTGATTGCCTCCCCTTACGCCTTTTCCAA
TGCCGCCACTCGACGTTGGTGCAAAATGACATGCACACTTGACAGCGCTC
GTGTGATCGTCTGCTCTTTTTTCTGTGTCTCTCCTCCATGCGGCCAAAGT
ATAGCCCTTCAACAAATTATTTTGTGTTGTCTCGGCCCCGTCGCTCCTTT
CTTGGCGCTGACGATCACACACACGTCACACGGAGAGCAGAGCGACACTA
GAACTCTCTCTCTTCAAACCTAGCCCCTGTTTTCTGTCGACAATGTTGTG
TCCTTGTGTTGGCACAGTTGTCGAGTGAGACTTTGGTGCGACCGTCGTTC
ACTACTATTCATCCACATGTAGCATTCATGTTCCTGTTCCCGCCCCAGGG
AGGCCGGGAGCTTGTTCTGCCCGTTGGAGGTAGAGGGGCGGCAACCGCAG
TGGGGGCGGCGGCAGCACCAACACCGGCGCCGGCACCGGCGGCAGGTGGG
AGAGTAGCCGGCGGTGGCGGCGGAGGCGGCACGAGGGGGGGTAAGCGCGG
CGGGGAGGCCGGAGCGCCGGCGTCTTTCTTGGACAAGCTGTGGAACATTC
TCAACGAGCCGCACCTGTCGAAGCACATCACTTGGAACCAGGTGCATTTT
ATTTGTTTTTTTCTGGTAAATTGCTACGTTTGTGATAGCACGCGTGTCTT
CGCAAAAGGGTGTTTTTTGCGTGATGTCCGTGCCCGTGTGTGGCGTCCAC
TTATGCACATAAAATCGTGTCGGGCATTACGGTCCATGTGCGTGTACGGC
GTGTTCAAGTAATTGCTGCAACCTACAGGCATGCGCGTCCGTACGCGCAC
TCGCGTGTATTACACATCAGTTGTGCGCGTGTTTCGCGTTTCCTGTCTCG
TGCTCTTCACCGCCGCCGCGGCTGTTGTCGACTCGACGGCAGGATGGCGA
CGGCATCGTGGTCAATCACCCAGCCCAGTTCGCTAAGGCCGTGCTGCCGA
AGTACTACAAGCACAATAACTACCAGTCCTTCGTCCGCCAGGTGGGTGGC
TTGATCGTAGCCTCTGAGCCAGCTTGGCCAACCCATGGTAGCATTGCAAA
GAAGAGGTGCTCGCTGGCTTCATCCAACACTTGGCCAAAACCTTTTCTTG
TGCGAAACGGCCTCGCGTTACTCTAGGCGGCGGCCCGGCGTCATGTCAGG
GGCTGCTGTAGGCTGAGCTGTACACAGGTTTGCCTTGAATCGGAACAACC
ACGAGGGACGAGGGTTTCAAACAAGGGTTTCAGCAGCACCGGGTCGTGTT
TGGATTGTTTGCGCACACTTACATGTCTGTCCTAGTCTACACCGGGCTAT
TTTCTTCGGGTGACGCTGGCTTTGGTTACGCTGAACGTTTCGCAGTTCTC
GGTGAACGAAGAAATTAATGGTTGGTCGTCGCAGTTTCTGCTGCAGCGCC
TGCTGGTCATGCTCCAAGCAGAGCATTTGGATGCGTCGACGAGATAGGGC
GCTCCATCTATAAACAAAAACCGGTAATGGTTGATCGCGTGCTTGCCTGC
TAATTGCTGCCAAGATTATGAGTTGCCCCTGAAGACTGTCTCGCTCTGAG
CTCTCAGGTTGCGCGTGAATATTTTGTCAAGTTTTACCTAGAGCTTAGTG
AACAGTAGAGCTGCAGGAGAGAAAGGTGGGCAGCCGGGCATTGGCTAGGT
CGACTTATGAGGGCAACTTCTTTTGCTCGATCTGTGATGGAGCCAATTGG
CGGTGTGCGTGGCTACCTCTGAGATTGACCTGTCCGTCGTGCGTCTGCGC
AGCTCAACATCTACGGCTTTCATAAGACGCGGCACGACGATGACGGCGAC
GAGGAATCGTGCGAGTTCAAGCACCCGAACTTCAGGAAAGGACAGCGACA
CCTCCTGGGCCTGATCCGCCGGAAGGCTCACAGCACAAGCGCTAGCAACA
GCGGCAGCAGCAACAACAACAACAACAACAACAACAACAACAGCAACAAC
AACAGCAGCAACAACAACAGTAACAGCAGCAGCAGCCATCACAACAGTGC
CAGCCCCTCGGCTGGCGTCAGACACCACGATAGCCGCACCGTGAGTGTTT
TGGCTTGCCTGCGGAAGCGTTGTTTTGCGCGTTGTTCACGAGGGTTCAGG
AGAGAAAAATTCACTGCTGAATAGACGCACCGATTTCTGGCCCCGATACA
GGAGCGAACCTGTTGTGCCATTTCTTTCCTTTCGTCCAGGTGGCGGCCCA
GGAAACAACGGGAAGCGTGGATCGCATCGCCGTCGAGCTTCGGGCCATGT
GTAACAGAGTGACGGTGAGGCTAGTCGTAGGGTCTATCTAAGTCTGGCGC
CCGCTATAGAGCGGGTGGAATTGGCTGGCACGGATGGAAATTATATAACG
GTTAATTCATTGAATAATGTGGGTGCCCTGTACAGGGCGCGTGAATCGGT
CTGGCGCATACCCGCCTTACAGAGGGCCTACCACTGTGTTGTTTTTTTGT
TCCTCCCTGCTACTGTCATGTATTGTCACCGCCCACGGTATCGTTCACCA
GCCCCAAACTACGGCCTCGCTTCCTTAGTCGCAGAAGCTCGATCCGATGT
CACTACCAGCGATGATCCACCAAGTCCTCACCTTAGTTGAACTCAAGTAC
AATAATTAGACTGGGGTGCGCAGGTTGTCCGGCAAGCTTGGTCGAGTTTC
CAGCTTTGCTCGGTGCCAGGCTCGGCGAGCCATGTTTTTTCTGCAGAAAA
TGGATGTGACGTATCAACGCTTGCCCGGTTCGTGTATGCGTCGAGGGTCG
GCAAGAATGGACGAGATGTAGATATTTTCCGTTCTAGTGCCGAACCAAGT
TTTTGGAAGAGCCCGACACCACTGGGTGCGGTCGTCTACGGTGCCCCTTA
GCACGCGACATACGCACACGATTTTTGGCAACAGCCACACTCGCTCATGA
ATGATGTCCGCTCGGCTGCTGTTTTGGGGGCTTTCCCCACGCGCGCGCGT
CGTACAGCACCTGGAGGCCGAGATAGGCCTGATCAAGCACCGCCACAACC
ACCTCCGAGCCGAGAGCCAGGCGTTGTTGCGGCTTCTCCTGTCGGAAGGG
GGGCGGCGGCTAGAGGAAAAGGCTTTGGCGGTGCTTGGACAGTTGGTGAG
AGCCTTCATAAAAAAAATGGGTTCCCGGTGAAGCTCCGAAAAAATTTCGA
TCGCCGCCCGCCAATACTGGTTTCACGTTTTGATTGGATCGTTGTTGGTT
GGACGAAGTGGTTGGTTCGGTTCCATGGGACGCTTGGCGGAAGTCGTGGT
TTAACCTGGAACGTGCTTGAATGCTCGTTTGTGCGCTTCGGGGTAAACAC
GTCTCAGGTTGACGGGTGGTCCATCGATTGGTCTGTCGGGTTGACTTCGC
ACCCCGTCCTCCTCATCACACACCAGTTTTGAACACAGGCATCAAACCTC
CGGTACCTCCCCACCCGCTCCCCCTTTTGAACCGGCACCTTGTCCCGCCG
CTGTCGAAGCCCCACACATCGGGCGAGGCAGAGCTGTCGGAGCTGCCGTA
CCTCGGACTTCACCCGGAGGACCACGAACAAGACCAGCATCACCACCAAC
ACCACCAACACCAACATCACCACCACTACCAACATCACCAACACGACCAA
CACTACCAATACACGGACGAGAGAGGGCCAACGCCGATGCCGGAGGAACC
GCCCGCGCATTTCCGCGGCAGCAGCCTCGGCGGCGAGCGTTTCGTGGCGG
GAGGCGCGGCAGGAGACGGAGACCCCACGGCGAGAGGAGGAGGGGTGGGT
GCCGCGAGGTACTCCAGGAGCGGTACGGCGCTCGCGAGCGTCGTCGCAGC
CGCCCTGGCTAGCAATGCGAGCGAGGAGGACGGCGAGGCTGCTGGGCCCC
TCCACGACCCGCCCCGACCGCGTCTCGGCGGTCCGGGGCGGGAGACAGCT
TGGGGAGGGATGGCGCCGAACGTCGACCTCTCGTCGCGAAGCCGCGGTTT
GGCCTCTGCGACGTTTTCTGGCCCGGCCGCCGGTGGCTCAGGACACGGAG
CTGCTGAGTTTGGCCGCTCTGGCAATGTTAGCTGCAATGGCAGCGAGGAG
GGTGCGGCGCGGTTATCCTCGGACGCGGCAGCCGCAAGCCACAGTTCTCG
CGCACCTCCGGTCGACGATCGGGGCCGTTCAACGACAGCTGTAGCACGGG
CGGCAGAACCGGCGGTGGCGGCGGCGCGAGGGGGCTCACTTCCACAAGGC
TCTTCACCGCGATGTAATTACTTGTACTCGGTTCGTGGGGAAAGAGAACA
GGTGGAGGCAGGGAGAGGGGTAGTGAGGGCGGAGAAACGACCAATGAGGG
GCGGTGGGGAAGGGGACACCCCCGGAGAAAGGGGTGGCGGGGGAGGGCAG
GACGGAGCGGATCAATCGGGAAGTGTGGCAAGGGGTAAACGAAGAGCTGT
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5679:281..5984+

>mRNA_Ecto-sp13_S_contig5679.16041.1 ID=mRNA_Ecto-sp13_S_contig5679.16041.1|Name=mRNA_Ecto-sp13_S_contig5679.16041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1860bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5679:281..5984+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAAGCCGCCGCAGCAAACATCAACTAGCCGTGGCAGTGGCTCTTC
GGGCGACAGGAATCAGGCGGAGGGAGGCCGGGAGCTTGTTCTGCCCGTTG
GAGGTAGAGGGGCGGCAACCGCAGTGGGGGCGGCGGCAGCACCAACACCG
GCGCCGGCACCGGCGGCAGGTGGGAGAGTAGCCGGCGGTGGCGGCGGAGG
CGGCACGAGGGGGGGTAAGCGCGGCGGGGAGGCCGGAGCGCCGGCGTCTT
TCTTGGACAAGCTGTGGAACATTCTCAACGAGCCGCACCTGTCGAAGCAC
ATCACTTGGAACCAGGATGGCGACGGCATCGTGGTCAATCACCCAGCCCA
GTTCGCTAAGGCCGTGCTGCCGAAGTACTACAAGCACAATAACTACCAGT
CCTTCGTCCGCCAGCTCAACATCTACGGCTTTCATAAGACGCGGCACGAC
GATGACGGCGACGAGGAATCGTGCGAGTTCAAGCACCCGAACTTCAGGAA
AGGACAGCGACACCTCCTGGGCCTGATCCGCCGGAAGGCTCACAGCACAA
GCGCTAGCAACAGCGGCAGCAGCAACAACAACAACAACAACAACAACAAC
AACAGCAACAACAACAGCAGCAACAACAACAGTAACAGCAGCAGCAGCCA
TCACAACAGTGCCAGCCCCTCGGCTGGCGTCAGACACCACGATAGCCGCA
CCGTGGCGGCCCAGGAAACAACGGGAAGCGTGGATCGCATCGCCGTCGAG
CTTCGGGCCATGTGTAACAGAGTGACGCACCTGGAGGCCGAGATAGGCCT
GATCAAGCACCGCCACAACCACCTCCGAGCCGAGAGCCAGGCGTTGTTGC
GGCTTCTCCTGTCGGAAGGGGGGCGGCGGCTAGAGGAAAAGGCTTTGGCG
GTGCTTGGACAGTTGCCCCACACATCGGGCGAGGCAGAGCTGTCGGAGCT
GCCGTACCTCGGACTTCACCCGGAGGACCACGAACAAGACCAGCATCACC
ACCAACACCACCAACACCAACATCACCACCACTACCAACATCACCAACAC
GACCAACACTACCAATACACGGACGAGAGAGGGCCAACGCCGATGCCGGA
GGAACCGCCCGCGCATTTCCGCGGCAGCAGCCTCGGCGGCGAGCGTTTCG
TGGCGGGAGGCGCGGCAGGAGACGGAGACCCCACGGCGAGAGGAGGAGGG
GTGGGTGCCGCGAGGTACTCCAGGAGCGGTACGGCGCTCGCGAGCGTCGT
CGCAGCCGCCCTGGCTAGCAATGCGAGCGAGGAGGACGGCGAGGCTGCTG
GGCCCCTCCACGACCCGCCCCGACCGCGTCTCGGCGGTCCGGGGCGGGAG
ACAGCTTGGGGAGGGATGGCGCCGAACGTCGACCTCTCGTCGCGAAGCCG
CGGTTTGGCCTCTGCGACGTTTTCTGGCCCGGCCGCCGGTGGCTCAGGAC
ACGGAGCTGCTGAGTTTGGCCGCTCTGGCAATGTTAGCTGCAATGGCAGC
GAGGAGGGTGCGGCGCGGTTATCCTCGGACGCGGCAGCCGCAAGCCACAG
TTCTCGCGCACCTCCGGTCGACGATCGGGGCCGTTCAACGACAGCTGTAG
CACGGGCGGCAGAACCGGCGGTGGCGGCGGCGCGAGGGGGCTCACTTCCA
CAAGGCTCTTCACCGCGATGTAATTACTTGTACTCGGTTCGTGGGGAAAG
AGAACAGGTGGAGGCAGGGAGAGGGGTAGTGAGGGCGGAGAAACGACCAA
TGAGGGGCGGTGGGGAAGGGGACACCCCCGGAGAAAGGGGTGGCGGGGGA
GGGCAGGACGGAGCGGATCAATCGGGAAGTGTGGCAAGGGGTAAACGAAG
AGCTGTGTGA
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