mRNA_Ecto-sp13_S_contig5678.16040.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5678.16040.1
Unique NamemRNA_Ecto-sp13_S_contig5678.16040.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: D8LMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH3_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 5.780e-70
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 294
            DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR
Sbjct:  472 DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 569          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: A0A6H5JCA5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA5_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.500e-66
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 294
            DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCD CHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR
Sbjct: 1444 DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDVCHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 1541          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: A0A3P3Y9U2_PLABS (RING-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y9U2_PLABS)

HSP 1 Score: 115 bits (288), Expect = 5.950e-30
Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    4 IKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGIC 291
            +  ++++C  C AGSG   C +HG E++E+KC +CC  +A++FCGG  HFC  CH  GF A+ +PC   + C+F G+HP +A+NG+ EY+LGC  C
Sbjct:  128 VNAADVVCSSC-AGSGRVKCKQHGLEYLEYKCRYCCTGIAAFFCGGTTHFCTRCHTFGFNARAQPCPEDSTCVFYGKHPSRARNGKDEYLLGCAAC 222          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: L1JRQ4_GUITC (RING-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRQ4_GUITC)

HSP 1 Score: 76.3 bits (186), Expect = 3.200e-14
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    4 IKPSELLCGKCSA---GSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACH---LHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 294
             K  +L+CG CSA   G+G  +C +HG +++E+KC +CC  +A++FC G  HFC++CH     G   +P+  +    C    +H         E+  GC +CR
Sbjct:  263 FKREDLICGSCSASKLGNGRKTCKQHGDQYVEYKCRFCC-SIATFFCFGSTHFCESCHKGWTEGSNQRPQSLV--KPCTCSEKHAKNCSTAAGEHCFGCSLCR 362          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: A0A7S3MHU1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MHU1_9SPIT)

HSP 1 Score: 73.2 bits (178), Expect = 4.780e-14
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    1 DIKPSELLCGKC----SAGSGGASCSEHGQEFMEHKCYWCCRKVASYFC-GGVMHFCDACHLHGFAAKPKP---CLGGAHCLFG-GQHPDKAKNG-EHEYVLGCGICR 294
            ++K  +LLC KC    S   G   C EHG EF++ KC +CC  VA +FC GG   FC  CH +  A+  +    C GG  C  G   HP  +K+  E ++ LGC +CR
Sbjct:   23 ELKREDLLCKKCQSKRSLDWGVTDCEEHGNEFIDWKCMFCC-SVALFFCAGGQYTFCTPCHNNAMASDLETKTECEGGLDCPLGLKSHPKASKSAAESKFALGCSLCR 129          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: J9IHP5_9SPIT (RING-type domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IHP5_9SPIT)

HSP 1 Score: 72.4 bits (176), Expect = 9.100e-13
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    7 KPSELLCGKCSA---GSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 294
            K  +LLC  C+A   G+    C+ HG+EF+E+KC +CC  +AS+FC G   FCD CH       PK C   + C F G HP    NG+  +  GC +C+
Sbjct:  296 KREDLLCVYCTALKLGNQFQPCNNHGEEFIEYKCQFCC-DIASWFCWGATRFCDPCHNIATFNIPKICNPNS-CKFNGNHPP---NGQ-PHSFGCKLCK 388          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: I7M9A5_TETTS (E3 ubiquitin-protein ligase MYCBP2, putative n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M9A5_TETTS)

HSP 1 Score: 71.6 bits (174), Expect = 1.800e-12
Identity = 42/104 (40.38%), Postives = 53/104 (50.96%), Query Frame = 1
Query:    1 DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACH-----LHGFAAKPKP-CLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 294
            D +P +L+C  C        C +HG EF+E KC +CC  +A +FC G  HFC+ CH     L     K  P C G   C F G+H     NG+ E  LGC ICR
Sbjct:  588 DFQPKDLICPNCCE-IPVEKCKQHGTEFIEFKCRYCC-SIAVWFCFGTTHFCEPCHNNVSNLQRMKPKDYPICKGKKGCPFQGEHNP---NGQ-ETPLGCSICR 685          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: J9J756_9SPIT (RING-type domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9J756_9SPIT)

HSP 1 Score: 67.8 bits (164), Expect = 4.020e-11
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 1
Query:    7 KPSELLCGKCSAGSGG---ASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 294
            K  ++LC  C+A   G   A C  HG+++M HKC +CC + AS+FC G   FCD CH       PK C     C   G HP    NG   +  GC +C+
Sbjct:  461 KKEDILCVYCTAVKSGNKFAPCKTHGEDYMGHKCQFCC-ETASWFCWGATRFCDPCHNVAAQNLPKICNPET-CQLKGNHPP---NGT-PFSFGCKLCK 553          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: J9IA98_9SPIT (RING-type domain-containing protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IA98_9SPIT)

HSP 1 Score: 65.1 bits (157), Expect = 3.560e-10
Identity = 37/98 (37.76%), Postives = 48/98 (48.98%), Query Frame = 1
Query:    7 KPSELLCGKCSAGSGG---ASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGIC 291
            K  ++LC  C A   G   A C  HG+++M HKC +CC + A +FC G + FCD CH       PK C     C   G HP    NG   +  GC +C
Sbjct:  465 KKEDILCVYCKAKKHGNQFAPCETHGEDYMGHKCQFCC-ETAIFFCWGTVRFCDPCHSIATQNVPKICNPQT-CQMKGNHPP---NGT-PHSFGCKLC 556          
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Match: J9IWV8_9SPIT (RING-type domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IWV8_9SPIT)

HSP 1 Score: 64.3 bits (155), Expect = 6.630e-10
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    7 KPSELLCGKCSA---GSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMHFCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR 294
            K  ++LC  C A   G+  A C  HG+++M HKC +CC + A +FC G   FCD CH       PK C     C   G HP    NG   +  GC +C+
Sbjct:  447 KKEDILCVYCKATKFGNQFAPCETHGEDYMGHKCQFCC-ETARWFCWGATRFCDPCHNIATQNIPKICNPET-CQMKGDHPP---NGT-PHSFGCKLCK 539          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5678.16040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LMH3_ECTSI5.780e-70100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCA5_9PHAE1.500e-6698.98RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A3P3Y9U2_PLABS5.950e-3045.83RING-type domain-containing protein n=1 Tax=Plasmo... [more]
L1JRQ4_GUITC3.200e-1433.98RING-type domain-containing protein n=1 Tax=Guilla... [more]
A0A7S3MHU1_9SPIT4.780e-1439.81Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
J9IHP5_9SPIT9.100e-1340.40RING-type domain-containing protein n=1 Tax=Oxytri... [more]
I7M9A5_TETTS1.800e-1240.38E3 ubiquitin-protein ligase MYCBP2, putative n=1 T... [more]
J9J756_9SPIT4.020e-1138.38RING-type domain-containing protein n=1 Tax=Oxytri... [more]
J9IA98_9SPIT3.560e-1037.76RING-type domain-containing protein n=2 Tax=Oxytri... [more]
J9IWV8_9SPIT6.630e-1037.37RING-type domain-containing protein n=1 Tax=Oxytri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5678contigEcto-sp13_S_contig5678:5539..6402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score230.7
Seed ortholog evalue2.9e-58
Seed eggNOG ortholog2880.D8LMH3
Model size294
KEGG koko:K10693
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of axon guidance
EggNOG OGsKOG1428@1,KOG1428@2759
EC2.3.2.27
Cds size294
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.7229261-CDS-Ecto-sp13_S_contig5678:5538..56161681463785.7229261-CDS-Ecto-sp13_S_contig5678:5538..5616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5678 5539..5616 +
1681463785.7358766-CDS-Ecto-sp13_S_contig5678:6186..64021681463785.7358766-CDS-Ecto-sp13_S_contig5678:6186..6402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5678 6187..6402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5678.16040.1prot_Ecto-sp13_S_contig5678.16040.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5678 5539..6402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5678.16040.1

>prot_Ecto-sp13_S_contig5678.16040.1 ID=prot_Ecto-sp13_S_contig5678.16040.1|Name=mRNA_Ecto-sp13_S_contig5678.16040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
DIKPSELLCGKCSAGSGGASCSEHGQEFMEHKCYWCCRKVASYFCGGVMH
FCDACHLHGFAAKPKPCLGGAHCLFGGQHPDKAKNGEHEYVLGCGICR
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mRNA from alignment at Ecto-sp13_S_contig5678:5539..6402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5678.16040.1 ID=mRNA_Ecto-sp13_S_contig5678.16040.1|Name=mRNA_Ecto-sp13_S_contig5678.16040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5678:5539..6402+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACATCAAACCTTCCGAACTCCTCTGTGGGAAGTGCTCGGCGGGCAGTGG CGGCGCGAGCTGCTCCGAACACGGGCAGGTGCTTGTCTGACGTTGTGTAT CCTTACTCTCGGCAGAGGATTGTCGGATAGAATCGAAGATATATGCATGG GGCACTTTTTTTAGAGAAGCCCCACTATTTCTTGTTTGTTTGACAACAAA GCTCTACTTGTCAGATTAATTGGAGCGCCCCGCCCATGTTTTTTAGATAG ATGGGTGGCTTTTCTACGCTGCTACATGGGAAAGCCTTCGATGGAAAAGC GAGATGAGAGACACTAGTAAGTGCAATTTTCTCCCATCGTTCTCTACTGT GGTTAAAGCGTTTGATCCTTTGCCGATGAACGGGGCTGGTTGTAGCCAAC CCTAGCTCGTCTCGCCTTGCCCTGGACCAATGTTTGTGTTCCTCGAGTAA TTCCCCCACCAAGACGGCAGTGGCCTGCACAATTGAGATGGCTAGCGGTG TCGCGTACCCTCCCCACTTGAAGATTGCTGGGAGACAGGCGCAGCTACTC AAAGCAAGCCGGTTTCTTGCACCCACACACCCGCAACTCTCCCGAAAAAA ACACTCTTTACTTAACCCGTACACAACCTCGCGTGCTGGCTGTCGCAGGA GTTCATGGAGCACAAGTGCTACTGGTGCTGCCGAAAAGTTGCCTCCTACT TTTGTGGCGGAGTAATGCACTTCTGCGACGCCTGTCATTTGCACGGTTTC GCCGCCAAGCCGAAGCCCTGCCTTGGTGGTGCCCATTGCCTGTTCGGTGG TCAACACCCTGACAAGGCCAAGAATGGAGAACACGAGTATGTGCTGGGAT GCGGCATTTGTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5678:5539..6402+

>mRNA_Ecto-sp13_S_contig5678.16040.1 ID=mRNA_Ecto-sp13_S_contig5678.16040.1|Name=mRNA_Ecto-sp13_S_contig5678.16040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5678:5539..6402+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACATCAAACCTTCCGAACTCCTCTGTGGGAAGTGCTCGGCGGGCAGTGG
CGGCGCGAGCTGCTCCGAACACGGGCAGGAGTTCATGGAGCACAAGTGCT
ACTGGTGCTGCCGAAAAGTTGCCTCCTACTTTTGTGGCGGAGTAATGCAC
TTCTGCGACGCCTGTCATTTGCACGGTTTCGCCGCCAAGCCGAAGCCCTG
CCTTGGTGGTGCCCATTGCCTGTTCGGTGGTCAACACCCTGACAAGGCCA
AGAATGGAGAACACGAGTATGTGCTGGGATGCGGCATTTGTCGT
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