mRNA_Ecto-sp13_S_contig56754.16038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56754.16038.1
Unique NamemRNA_Ecto-sp13_S_contig56754.16038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.310e-18
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG QGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK
Sbjct: 1193 AGGQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 1233
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.240e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   13 GINLATADTVIIYDSDWNPHNDLQALARAHRIGQANKAR 129
            GINLATADTVIIYDSDWNPHNDLQALARAHRIGQANKAR
Sbjct: 1097 GINLATADTVIIYDSDWNPHNDLQALARAHRIGQANKAR 1135
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A3S5API2_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5API2_9PLAT)

HSP 1 Score: 80.1 bits (196), Expect = 2.210e-17
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG  GINLATADTVIIYDSDWNPHND+QA +RAHRIGQANK
Sbjct:  169 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 209
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A7K8ZL85_9PASS (CHD3 protein (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7K8ZL85_9PASS)

HSP 1 Score: 78.2 bits (191), Expect = 2.730e-17
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG  GINLATADTV+I+DSDWNPHND+QA +RAHRIGQANK
Sbjct:   41 AGGLGINLATADTVVIFDSDWNPHNDIQAFSRAHRIGQANK 81
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A6G5ACX4_RHIMP (Helicase C-terminal domain-containing protein n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ACX4_RHIMP)

HSP 1 Score: 80.1 bits (196), Expect = 2.740e-17
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG  GINLATADTVIIYDSDWNPHND+QA +RAHRIGQANK
Sbjct:  163 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 203
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A2D4HFB9_MICLE (Helicase C-terminal domain-containing protein (Fragment) n=24 Tax=Episquamata TaxID=1329912 RepID=A0A2D4HFB9_MICLE)

HSP 1 Score: 78.6 bits (192), Expect = 3.220e-17
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG  GINLATADTVII+DSDWNPHND+QA +RAHRIGQANK
Sbjct:    3 AGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANK 43
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A7S4BBR2_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BBR2_CHRCT)

HSP 1 Score: 80.9 bits (198), Expect = 3.430e-17
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG  GINLATADTVIIYDSDWNPHND+QAL+RAHR+GQANK
Sbjct:    5 AGGLGINLATADTVIIYDSDWNPHNDIQALSRAHRLGQANK 45
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A2R7WMB9_ONCFA (Helicase C-terminal domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WMB9_ONCFA)

HSP 1 Score: 80.1 bits (196), Expect = 4.120e-17
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG  GINLATADTVIIYDSDWNPHND+QA +RAHRIGQANK
Sbjct:   11 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANK 51
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: W6UI63_ECHGR (Chromodomain-helicase-DNA-binding protein n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=W6UI63_ECHGR)

HSP 1 Score: 81.6 bits (200), Expect = 5.530e-17
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANKA 126
            AG  GINLATADTVIIYDSDWNPHND+QA +RAHRIGQANKA
Sbjct: 1723 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKA 1764
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BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Match: A0A7R9KQV2_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9KQV2_9ACAR)

HSP 1 Score: 81.6 bits (200), Expect = 5.530e-17
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANK 123
            AG  GINLATADTVIIYDSDWNPHND+QAL+RAHRIGQANK
Sbjct:  855 AGGLGINLATADTVIIYDSDWNPHNDIQALSRAHRIGQANK 895
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56754.16038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7A4_ECTSI1.310e-1897.56Similar to chromodomain helicase DNA binding prote... [more]
A0A6H5JZW8_9PHAE6.240e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3S5API2_9PLAT2.210e-1787.80Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A7K8ZL85_9PASS2.730e-1782.93CHD3 protein (Fragment) n=3 Tax=Passeriformes TaxI... [more]
A0A6G5ACX4_RHIMP2.740e-1787.80Helicase C-terminal domain-containing protein n=1 ... [more]
A0A2D4HFB9_MICLE3.220e-1785.37Helicase C-terminal domain-containing protein (Fra... [more]
A0A7S4BBR2_CHRCT3.430e-1787.80Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A2R7WMB9_ONCFA4.120e-1787.80Helicase C-terminal domain-containing protein n=1 ... [more]
W6UI63_ECHGR5.530e-1788.10Chromodomain-helicase-DNA-binding protein n=1 Tax=... [more]
A0A7R9KQV2_9ACAR5.530e-1790.24Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56754contigEcto-sp13_S_contig56754:419..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score86.3
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog2880.D7G7A4
Model size129
KEGG koko:K11643,ko:K14439
KEGG Pathwayko04550,ko05165,ko05203,map04550,map05165,map05203
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
EC3.6.4.12
Cds size129
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.5775614-CDS-Ecto-sp13_S_contig56754:418..5471681463785.5775614-CDS-Ecto-sp13_S_contig56754:418..547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56754 419..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56754.16038.1prot_Ecto-sp13_S_contig56754.16038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56754 419..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56754.16038.1

>prot_Ecto-sp13_S_contig56754.16038.1 ID=prot_Ecto-sp13_S_contig56754.16038.1|Name=mRNA_Ecto-sp13_S_contig56754.16038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
AGWQGINLATADTVIIYDSDWNPHNDLQALARAHRIGQANKAR
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mRNA from alignment at Ecto-sp13_S_contig56754:419..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56754.16038.1 ID=mRNA_Ecto-sp13_S_contig56754.16038.1|Name=mRNA_Ecto-sp13_S_contig56754.16038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56754:419..547+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGTTGGCAGGGCATCAACCTGGCCACGGCTGACACGGTGATCATCTA
TGACTCCGACTGGAACCCTCACAACGACCTGCAAGCGCTGGCTCGCGCGC
ATCGCATCGGGCAGGCCAACAAGGCGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56754:419..547+

>mRNA_Ecto-sp13_S_contig56754.16038.1 ID=mRNA_Ecto-sp13_S_contig56754.16038.1|Name=mRNA_Ecto-sp13_S_contig56754.16038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56754:419..547+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGTTGGCAGGGCATCAACCTGGCCACGGCTGACACGGTGATCATCTA
TGACTCCGACTGGAACCCTCACAACGACCTGCAAGCGCTGGCTCGCGCGC
ATCGCATCGGGCAGGCCAACAAGGCGCGT
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