mRNA_Ecto-sp13_S_contig5675.16037.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5675.16037.1
Unique NamemRNA_Ecto-sp13_S_contig5675.16037.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5675.16037.1 vs. uniprot
Match: D7G425_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G425_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 6.660e-77
Identity = 127/150 (84.67%), Postives = 135/150 (90.00%), Query Frame = 3 
Query:  135 MHGTN-QKNQQSQSRWSIRVQNETQRQRTGAIDLADMQQKHAAAAVGPEPDARRSLWDDELEIHDTTNRKEGVDGVEIAVVFDVESSTTEQRETFTQSVARIEMSTFRQQPDLRTTLWVPLLPVASHLEDPFGAVKIAVTYRSKDCVAQG 581
            MH +  Q+ QQSQSRWS RVQN TQRQRTGAIDLADMQQKHAAA VGPEPDARR LWDDELEI DTTN KE VDGVEIAVVFDV+S TTEQRETFTQSVARI+MSTFRQ+ DLRTTLWVPL P+ASHL+DPFGAVKI+VTY SKDCVAQG
Sbjct:    1 MHSSGGQQRQQSQSRWSNRVQNGTQRQRTGAIDLADMQQKHAAATVGPEPDARRPLWDDELEIQDTTNGKEHVDGVEIAVVFDVKSRTTEQRETFTQSVARIDMSTFRQRSDLRTTLWVPLRPIASHLDDPFGAVKISVTYHSKDCVAQG 150
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5675.16037.1 vs. uniprot
Match: A0A6H5KYD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD5_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 4.150e-64
Identity = 111/131 (84.73%), Postives = 116/131 (88.55%), Query Frame = 3 
Query:  441 MSTFRQQPDLRTTLWVPLLPVASHLEDPFGAVKIAVTYRSKDCVAQGYLFALFCGLVPLSWMDTLAAACSSYDDKLSNKTSDRIWSPTASSSKKAKQPSDAAAESRLKSLSKDTKVPALVTRTTSSQAVAA 833
            MSTFRQQPDLRTTLWVPL PVASHLEDPFGAVKIA TY SKDCV QGYLFALFCGLVPLSWMDTLA A SS DD LS+KTSDRIWSP  SSS+KAK+PSDAAA+SRLKS S DTK+PA VT TTSS AVAA
Sbjct:    1 MSTFRQQPDLRTTLWVPLRPVASHLEDPFGAVKIAATYHSKDCVPQGYLFALFCGLVPLSWMDTLATAFSSCDDNLSSKTSDRIWSPKVSSSRKAKRPSDAAADSRLKSSSNDTKMPASVTPTTSSPAVAA 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5675.16037.1 vs. uniprot
Match: A0A6H5K8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A7_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 7.170e-39
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 3 
Query:  135 MHGTNQKNQQSQSRWSIRVQNETQRQRTGAIDLADMQQKHAAAAVGPEPDARRSLWDDELEIHDTTNRKEGVDGVEIAVVFDVES 389
            MHGT+Q+ QQSQSRWSIRVQNETQRQRTGAIDLADMQQ+ AA+AVGPEPDARR LW+DELEI DTT+ KEGVDGVEIAVVFDVES
Sbjct:    1 MHGTDQQGQQSQSRWSIRVQNETQRQRTGAIDLADMQQQDAASAVGPEPDARRPLWEDELEIQDTTDGKEGVDGVEIAVVFDVES 85
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5675.16037.1 vs. uniprot
Match: A0A6H5JN36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN36_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.480e-19
Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 3 
Query:  297 LWDDELEIHDTTNRKEGVDGVEIAVVFDVESSTTEQRETFTQSVARIEMSTFRQQPDLRTTLWVPLLPV-ASHLEDPF------GAVKIAVTYRSKDCVAQGYLFALFCGLVPL 617
            LW +E+E+ D    +E  D V+IA+VF++  + T QRE+F  SV  I +  FR +PD   TLW PL PV AS  +D        GAV+IA+TY S DCV +GY FA FCGLVPL
Sbjct:   32 LWPEEVEVED----REDQDTVQIALVFELAPTATAQRESFCHSVGAINVGEFRSRPDETVTLWKPLRPVEASPHKDSLDSNHDVGAVQIAITYYSDDCVDEGYTFAAFCGLVPL 141
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5675.16037.1 vs. uniprot
Match: D7FL80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL80_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 6.360e-19
Identity = 60/126 (47.62%), Postives = 75/126 (59.52%), Query Frame = 3 
Query:  261 AAVGPEPDARRSLWDDELEIHDTTNRKEGVDGVEIAVVFDVESSTTEQRETFTQSVARIEMSTFRQQPDLRTTLWVPLLPV-ASHLEDPF------GAVKIAVTYRSKDCVAQGYLFALFCGLVPL 617
            AA  P P     LW +E+E+ D    + G D V+IA+VF +  + T QRE+F  SV  I++  FR +PD   TLW  L PV AS  +D        GAV+IA+TY S DCV QGY FA FCGLVPL
Sbjct:   19 AATAPMP-----LWPEEVEVED----RAGQDTVQIALVFALAPTATAQRESFCHSVGVIDVRDFRSRPDETVTLWKSLRPVEASPHKDSLDSNHDVGAVQIAITYYSDDCVDQGYTFAAFCGLVPL 135
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5675.16037.1 vs. uniprot
Match: A0A6H5JLN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.960e-13
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:  357 VEIAVVFDVESSTTEQRETFTQSVARIEMSTFRQQPDLRTTLWVPLLPVAS--HLEDPFGAVKIAVTYRSKDCVAQGYLFALFCGL 608
            VE+AV+FD+ +    +R+ F  S+A I++  FR QP+ R  LW+PL PV S   L D +G+++I++ Y + DCV QGY+F LFCGL
Sbjct:   91 VEVAVLFDLIAREMPKRQLFRHSIASIDLDAFRAQPEKRVELWLPLQPVNSGNDLRD-YGSIQISIMY-TDDCVTQGYMFGLFCGL 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5675.16037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G425_ECTSI6.660e-7784.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYD5_9PHAE4.150e-6484.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8A7_9PHAE7.170e-3987.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN36_9PHAE1.480e-1949.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL80_ECTSI6.360e-1947.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLN7_9PHAE3.960e-1346.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5675contigEcto-sp13_S_contig5675:4262..7890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1291
Hectar predicted targeting categorymitochondrion
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_000360.1
Cds size750
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5675.16037.1prot_Ecto-sp13_S_contig5675.16037.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5675 4717..7804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.4781818-UTR-Ecto-sp13_S_contig5675:4261..47161681463785.4781818-UTR-Ecto-sp13_S_contig5675:4261..4716Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5675 4262..4716 -
1681463785.5441766-UTR-Ecto-sp13_S_contig5675:7804..78901681463785.5441766-UTR-Ecto-sp13_S_contig5675:7804..7890Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5675 7805..7890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.4891129-CDS-Ecto-sp13_S_contig5675:4716..49721681463785.4891129-CDS-Ecto-sp13_S_contig5675:4716..4972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5675 4717..4972 -
1681463785.5006068-CDS-Ecto-sp13_S_contig5675:5630..57381681463785.5006068-CDS-Ecto-sp13_S_contig5675:5630..5738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5675 5631..5738 -
1681463785.5106921-CDS-Ecto-sp13_S_contig5675:5906..59871681463785.5106921-CDS-Ecto-sp13_S_contig5675:5906..5987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5675 5907..5987 -
1681463785.5242734-CDS-Ecto-sp13_S_contig5675:7063..72031681463785.5242734-CDS-Ecto-sp13_S_contig5675:7063..7203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5675 7064..7203 -
1681463785.534614-CDS-Ecto-sp13_S_contig5675:7639..78041681463785.534614-CDS-Ecto-sp13_S_contig5675:7639..7804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5675 7640..7804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5675.16037.1

>prot_Ecto-sp13_S_contig5675.16037.1 ID=prot_Ecto-sp13_S_contig5675.16037.1|Name=mRNA_Ecto-sp13_S_contig5675.16037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
MLSISFLAFRGVPRTCMHGTNQKNQQSQSRWSIRVQNETQRQRTGAIDLA
DMQQKHAAAAVGPEPDARRSLWDDELEIHDTTNRKEGVDGVEIAVVFDVE
SSTTEQRETFTQSVARIEMSTFRQQPDLRTTLWVPLLPVASHLEDPFGAV
KIAVTYRSKDCVAQGYLFALFCGLVPLSWMDTLAAACSSYDDKLSNKTSD
RIWSPTASSSKKAKQPSDAAAESRLKSLSKDTKVPALVTRTTSSQAVAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig5675:4262..7890-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5675.16037.1 ID=mRNA_Ecto-sp13_S_contig5675.16037.1|Name=mRNA_Ecto-sp13_S_contig5675.16037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5675:4262..7890- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGGTGATCACCGTCCCCATCCTTCGCCCGTCTCTCACCCGTTCAAGG
AGTTGCCGTAATCCTGAAACTACACAGCAAAGAAGCATGCTTAGCATTTC
TTTTCTCGCCTTTCGCGGCGTGCCACGCACTTGTATGCATGGCACCAACC
AGAAGAACCAGCAATCGCAATCGAGGTGGTCTATCCGAGTGCAGAATGAA
ACGCAGAGGCAGCGCACCGGAGCCATCGACCTCGCCGACATGCAGCAGAA
GGTATTACACAAAACTGTACGATACGTCCTTGGCTTCTTGGTGCCAGTTG
GTGTGTTCTTCGTGGTGCCCGATGATGTAGGTACCCGGAGACAGAATAGC
GGGGGATGCGCTGCATGTATTTTGATTTCTTCCTTTCCACAGCCGGCGTT
GAAGGGGCCGCCCCACAGGATGGAAGAAGACGGGACTCACTCGTGAGATG
TGTAGATGAAGTAGGGTGTAGATGAAGTAGCCGAGATCGTCAAGCCGTTG
GAAAATGTCCCCCCCTTCTCTCCATCTTGTCTCTCATGCTCTCACATTTC
CCTCGAGTTCTCCAAGTGCCACACACAACGGTAACAGTATTATTAGTTGG
TCTCGCTCCAATTTCAGTCACATTTTTTGTGTCTGCTTCCCCGCCTTGTG
TCGTTTGTTTTTTCTTGGTGTTGCTTCGTCTCCTCAGCATGCTGCTGCCG
CTGTAGGTCCTGAACCCGACGCCCGACGTTCTCTGTGGGATGATGAGCTG
GAAATCCATGACACGACGAACAGAAAAGAGGGTGTAGATGGCGTTGAGAT
CGCGGTGGTGTTTGATGTCGAGTCAAGGTGAGCGGCTCCCCGTTGTTTCG
GGATTTCCGCATGAATGTATCGATCCACGATTTGTACCGACATCAATCAA
TGTGATGACGTATGCACACGTCCACACCTACAATAAATAACGGGTTTCGT
CCTCCGAGTACAGTTATGCTACTACTGTAGATGTGTACGCGGGGGCAACA
TTGCCATGGAGCGTTGACTGGTAACTCGGTGGTTTTTTTCGCTCCAAAAC
AACCGGGTACAACTTGCAAACAATAGCTGCAAGGTTCTGGCTCATTGAAC
GAGACGGCACTCCGTTGATGTTACAGCTTTCGCGTCTTCTTCCGAAGACG
GACTGGTCCATGATTGCTGCTTATATTTTCCCAAAAAAGCAACGCGCTCA
GGATTTGTTCTGGTGCTGCGCGGGCTTTTGTCGCACCTGTCAGCACCTAC
CTACCTCTGCCTGAATGCGAATAAAGAAGATGAAGGAACAAAGAAGATGC
TTGACAGGACCACCGAAAATACGACAGACAGGTGGTGACGGAGCATACCA
ATTTCCGACACGCACGACGAGATACATGTGGGTCAGAACCAATTACCAAT
TTCCCAGTTATAACGAAGACGTGGTAGCTTGTTCTCCTCCAGAGGGCTGA
AAGAAGAAGCAATTCACCTTTGGGCTCGAGTTTCCACCAGCCAAGCGGCT
CCTCCAGAGGGCCGAACGAAGAAGGAAAGCCTGTGAGCTCGATTTTCTGC
CAGCCAAGGGGAAAGATCACCGGAAATAATTCAAGAGTGTCGCCAGCCTC
AACCTGATTTATCATCACATTGTCGTGTTTCTCCATCGTCATGTATCTGA
TCACAGGAAGACAAACAGGGGGAAAAATATACGGTATGAGGCCGCATAGA
TTTTTCATGACACACAAGAAGACTCAAGAGTGTCGACCACGTGTTAACGT
GTTCTAGCACCCCATCATGTAGCCCCCCCCTCCGCTTGGATGAGAGCCCG
CCCCGTCTGAAGGCTGGGCGCACCAATAGTCCGGGGCAGGTTTAACGGCT
GACAACACCCTCGTTTTCCCATATGCGTTTGGTTCCGATGATACTGCACT
TAGCACGACCGAACAGCGCGAGACGTTCACCCAGTCGGTCGCGAGGATCG
AAATGTCAACCTTCCGGCAGCAACCAGACCTCAGGTACGCCTCGGGATCT
TTCGTGGATGAAGCAACCCCGTAACGACTTCCGAATCACATGACGTACTG
CCTTTTTACTACGCCCCTCTGATTGTTTCCTGCACTCTCTCGATATTGAC
CGCGTTGCTAATCATCACAACCCGGTCACCATCGCTTGCCCTGTTACACC
AGGACTACGCTCTGGGTGCCGCTTCTTCCGGTAGCGTCGCACCTTGAAGA
CCCCTTCGGAGCCGTCAAGATTGCGGTGACCTACCGCTCGAAAGACTGCG
TGGCCCAAGGGTAAGCGGTGGGCACCATAGGCGGGCCTCTTTTTGGACCA
GCTGAAGAGGATTGGTTTGTTTGATTGTGCTGCTTCCTTCGAACGATCAT
CATCTGTTTTCCGCGGGTTGCACATGACGCCCTTTCCCCTGGACCAGAAC
TCAAGCCTCTCTATTGTTCAACAACGAAGAGGATGCCGAAATCAAATGAT
GTCTTTTCGGCGACAACTCTCAGCAAGACTATTCCAACGCCGCCACTTCC
GGAATCGTCACTACTGTTGTTCCTGCCGAGTGATGGAGCTTTTGACGTCG
GTCCAAGCGGGGGGGGGTGATATCTTAGTATGCAACCACAACACGCTCGG
TATGCTTTGGCTCCTACAATAGTTAGAAGGAACGTATTATGTCTCGGCGT
ACGTCATTCCCCACAAAACAATCGGCAGTGAAAACATGACATAATTCGAC
AGTCGTGTTAATGCGGTATGTCGGTGGGCATTTTCTGAAACTGTCGTCCT
CGTCAACTCTCTGACGGTCGCAACTCGTATCTTCCAATGACGAGGTGTCG
CTCAAACAAAAGTGAATGCCGAGACAAGACTTTCAAGATTCCCTCAGTGG
GCTTGCTCAACGACTCTATCTCACATTTTGCCCCCTGTTCCTTCCCCTCC
ATTTTTTGTATTGAACAGATACTTGTTTGCGCTGTTCTGTGGCCTGGTTC
CCCTATCGTGGATGGACACTCTCGCCGCCGCGTGCTCATCCTACGACGAC
AAGCTGAGTAACAAGACCAGCGATCGGATCTGGTCTCCCACGGCATCCTC
GTCAAAGAAAGCCAAACAACCCTCAGACGCTGCTGCCGAGAGCAGGCTCA
AGTCGCTATCGAAGGACACCAAGGTGCCGGCCTTGGTGACTCGCACGACA
TCATCTCAAGCGGTGGCGGCATGAACCACCCTTCCTTGCGAAAAAAAACG
GGAAAATTACGTGGAGCTGCTTGAGGTTGTCATCCATGTGTTTGGTCGTC
GCTGATCTGCGGAACCCTTACGCGTGGCTGCACCTCTCTCTGTTTGCATA
TGTGGTTGGTAAGTATGCTTTGAAGTAGAGTAGTATCTTTGGTCGTTTCC
GGCGTCCATCGTTTCAGAATTTCCCGAACCTTTTGAGGGTTCGTGTCCTG
TCTTGTTCCTAATGGTATTACCCGGTCGAGTATGAAAGTCGTTTCACTAC
CCTCACACCCTCCAGAGCTCATTCGTGTGGCGCTACCATGCAGCTCCGAT
GCATGCCGAAAGAAGCGGTTAGGCGTGCACGTTTTCTCGGTTTTCTGAAA
CCGAGATCTACACGCGGTCATCTACCAAGCTTCTGGAGTGGTGAATGTTC
ATGGATTGCTTAGTCTCCTACTTGTAGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5675:4262..7890-

>mRNA_Ecto-sp13_S_contig5675.16037.1 ID=mRNA_Ecto-sp13_S_contig5675.16037.1|Name=mRNA_Ecto-sp13_S_contig5675.16037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5675:4262..7890- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTAGCATTTCTTTTCTCGCCTTTCGCGGCGTGCCACGCACTTGTAT
GCATGGCACCAACCAGAAGAACCAGCAATCGCAATCGAGGTGGTCTATCC
GAGTGCAGAATGAAACGCAGAGGCAGCGCACCGGAGCCATCGACCTCGCC
GACATGCAGCAGAAGCATGCTGCTGCCGCTGTAGGTCCTGAACCCGACGC
CCGACGTTCTCTGTGGGATGATGAGCTGGAAATCCATGACACGACGAACA
GAAAAGAGGGTGTAGATGGCGTTGAGATCGCGGTGGTGTTTGATGTCGAG
TCAAGCACGACCGAACAGCGCGAGACGTTCACCCAGTCGGTCGCGAGGAT
CGAAATGTCAACCTTCCGGCAGCAACCAGACCTCAGGACTACGCTCTGGG
TGCCGCTTCTTCCGGTAGCGTCGCACCTTGAAGACCCCTTCGGAGCCGTC
AAGATTGCGGTGACCTACCGCTCGAAAGACTGCGTGGCCCAAGGATACTT
GTTTGCGCTGTTCTGTGGCCTGGTTCCCCTATCGTGGATGGACACTCTCG
CCGCCGCGTGCTCATCCTACGACGACAAGCTGAGTAACAAGACCAGCGAT
CGGATCTGGTCTCCCACGGCATCCTCGTCAAAGAAAGCCAAACAACCCTC
AGACGCTGCTGCCGAGAGCAGGCTCAAGTCGCTATCGAAGGACACCAAGG
TGCCGGCCTTGGTGACTCGCACGACATCATCTCAAGCGGTGGCGGCATGA
back to top