mRNA_Ecto-sp13_S_contig56740.16036.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56740.16036.1
Unique NamemRNA_Ecto-sp13_S_contig56740.16036.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56740.16036.1 vs. uniprot
Match: D7G6H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H8_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.180e-35
Identity = 132/172 (76.74%), Postives = 141/172 (81.98%), Query Frame = 1 
Query:    1 QVARTLLGPLHKYQQSQKRVQDAIDLQRMASAPTARVDNALSSAGGGAATKELPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEATTVVPPKAPGSPKKKETTTPKPVAKPAKARASTTAPPAQPXXXXXXXXXXXXXX----RNKKKRDVEAEERAAELEF 504
            +VARTLLGPL+KYQQSQKRVQDA+DLQRMASAPTARVD A SS GGG A K+LPGXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXX EATT VP KAPGS KKK+ +TPKPVAKPA+AR +TT      XXXXXXXXXX        RNKKK+DVEAEERAAELEF
Sbjct:   42 EVARTLLGPLYKYQQSQKRVQDAVDLQRMASAPTARVDVAPSSGGGGGAAKDLPGXXXXXXXXXXXXXXXXPEVTVVXXXXXXXXXXXXXXXAEATTAVPSKAPGSEKKKDASTPKPVAKPAEARGATTXXXXXXXXXXXXXXXXPAEKKEGTRNKKKKDVEAEERAAELEF 213
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BLAST of mRNA_Ecto-sp13_S_contig56740.16036.1 vs. uniprot
Match: A0A6H5L8H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.950e-18
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 QVARTLLGPLHKYQQSQKRVQDAIDLQRMASAPTARVDNALSSAGGGAATKELPG 165
            +VARTLLGPL+KYQQSQKRVQDA+DLQR ASAPTARVD+A SSA GGAATKELPG
Sbjct:  578 EVARTLLGPLYKYQQSQKRVQDAVDLQRTASAPTARVDDAPSSAAGGAATKELPG 632
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56740.16036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6H8_ECTSI1.180e-3576.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8H1_9PHAE6.950e-1887.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56740contigEcto-sp13_S_contig56740:2..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size504
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.4253397-CDS-Ecto-sp13_S_contig56740:1..5051681463785.4253397-CDS-Ecto-sp13_S_contig56740:1..505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56740 2..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56740.16036.1prot_Ecto-sp13_S_contig56740.16036.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56740 2..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56740.16036.1

>prot_Ecto-sp13_S_contig56740.16036.1 ID=prot_Ecto-sp13_S_contig56740.16036.1|Name=mRNA_Ecto-sp13_S_contig56740.16036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
QVARTLLGPLHKYQQSQKRVQDAIDLQRMASAPTARVDNALSSAGGGAAT
KELPGGGKHAGEEPSPKSSAAPEATAATPATPAASKLTAATPAEATTVVP
PKAPGSPKKKETTTPKPVAKPAKARASTTAPPAQPPPAAKKPEAKKKGTR
NKKKRDVEAEERAAELEF
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mRNA from alignment at Ecto-sp13_S_contig56740:2..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56740.16036.1 ID=mRNA_Ecto-sp13_S_contig56740.16036.1|Name=mRNA_Ecto-sp13_S_contig56740.16036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56740:2..505- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGCACGCACGCTGCTCGGACCGCTACACAAGTACCAGCAGTCCCA
AAAGCGGGTGCAGGATGCGATCGACCTGCAGCGAATGGCGTCAGCGCCTA
CGGCAAGGGTCGATAACGCGTTGTCATCTGCTGGTGGTGGTGCTGCTACG
AAGGAATTGCCCGGAGGAGGGAAACATGCCGGCGAGGAACCTTCTCCGAA
GTCTTCTGCAGCGCCAGAAGCGACGGCAGCGACCCCGGCGACTCCTGCGG
CATCAAAACTGACCGCAGCAACACCCGCAGAGGCGACAACAGTAGTGCCA
CCAAAGGCGCCAGGGTCCCCAAAAAAGAAAGAAACCACGACGCCAAAACC
CGTCGCAAAACCAGCAAAGGCAAGAGCGTCAACAACAGCGCCGCCTGCCC
AACCCCCACCGGCAGCGAAGAAGCCGGAGGCGAAGAAGAAAGGCACAAGA
AATAAAAAGAAGAGAGACGTGGAGGCGGAGGAGCGCGCCGCCGAGCTCGA
GTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56740:2..505-

>mRNA_Ecto-sp13_S_contig56740.16036.1 ID=mRNA_Ecto-sp13_S_contig56740.16036.1|Name=mRNA_Ecto-sp13_S_contig56740.16036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56740:2..505- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGCACGCACGCTGCTCGGACCGCTACACAAGTACCAGCAGTCCCA
AAAGCGGGTGCAGGATGCGATCGACCTGCAGCGAATGGCGTCAGCGCCTA
CGGCAAGGGTCGATAACGCGTTGTCATCTGCTGGTGGTGGTGCTGCTACG
AAGGAATTGCCCGGAGGAGGGAAACATGCCGGCGAGGAACCTTCTCCGAA
GTCTTCTGCAGCGCCAGAAGCGACGGCAGCGACCCCGGCGACTCCTGCGG
CATCAAAACTGACCGCAGCAACACCCGCAGAGGCGACAACAGTAGTGCCA
CCAAAGGCGCCAGGGTCCCCAAAAAAGAAAGAAACCACGACGCCAAAACC
CGTCGCAAAACCAGCAAAGGCAAGAGCGTCAACAACAGCGCCGCCTGCCC
AACCCCCACCGGCAGCGAAGAAGCCGGAGGCGAAGAAGAAAGGCACAAGA
AATAAAAAGAAGAGAGACGTGGAGGCGGAGGAGCGCGCCGCCGAGCTCGA
GTTC
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